Wall clock time and date at job start Wed Apr 1 2020 01:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99710 * 2 1 4 4 H 1.09003 * 109.47417 * 330.00364 * 3 2 1 5 5 C 1.53003 * 109.47236 * 89.99802 * 3 2 1 6 6 C 1.52994 * 109.47228 * 210.00360 * 3 2 1 7 7 C 1.52990 * 109.47618 * 64.99595 * 6 3 2 8 8 C 1.50698 * 109.47502 * 180.02562 * 7 6 3 9 9 O 1.21276 * 120.00030 * 359.72538 * 8 7 6 10 10 N 1.34783 * 119.99800 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99591 * 179.72277 * 10 8 7 12 12 H 1.09000 * 110.29070 * 324.32558 * 11 10 8 13 13 C 1.54262 * 110.32288 * 86.45735 * 11 10 8 14 14 C 1.54377 * 105.06050 * 118.89305 * 13 11 10 15 15 N 1.48561 * 104.59567 * 23.85276 * 14 13 11 16 16 C 1.46902 * 111.00111 * 200.95991 * 15 14 13 17 17 C 1.50697 * 109.46988 * 293.84926 * 16 15 14 18 18 O 1.21301 * 119.99995 * 354.17650 * 17 16 15 19 19 N 1.34774 * 120.00289 * 174.17672 * 17 16 15 20 20 C 1.37097 * 120.00485 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99785 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00308 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99462 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47268 * 60.00407 * 24 22 20 26 26 H 1.48496 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47722 * 300.00571 * 24 22 20 28 28 C 1.48565 * 104.22141 * 320.51694 * 15 14 13 29 29 H 1.09001 * 110.41010 * 280.70596 * 28 15 14 30 30 C 1.52997 * 110.40981 * 158.25856 * 28 15 14 31 31 H 1.09002 * 109.47038 * 299.99417 * 1 2 3 32 32 H 1.08996 * 109.47439 * 59.99780 * 1 2 3 33 33 H 1.08995 * 109.46554 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46966 * 59.99953 * 5 3 2 35 35 H 1.08998 * 109.47069 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47409 * 300.00000 * 5 3 2 37 37 H 1.09007 * 109.46845 * 304.99590 * 6 3 2 38 38 H 1.08994 * 109.47449 * 185.00362 * 6 3 2 39 39 H 1.09007 * 109.47017 * 60.00100 * 7 6 3 40 40 H 1.09001 * 109.47130 * 300.00512 * 7 6 3 41 41 H 0.96996 * 120.00503 * 359.73117 * 10 8 7 42 42 H 1.08995 * 110.32459 * 237.79260 * 13 11 10 43 43 H 1.09003 * 110.31870 * 359.89657 * 13 11 10 44 44 H 1.09000 * 110.40979 * 142.63316 * 14 13 11 45 45 H 1.08996 * 110.41258 * 264.95707 * 14 13 11 46 46 H 1.08994 * 109.47069 * 53.84753 * 16 15 14 47 47 H 1.08991 * 109.47202 * 173.84899 * 16 15 14 48 48 H 0.97001 * 119.99723 * 359.97438 * 19 17 16 49 49 H 0.97003 * 119.99374 * 179.97438 * 23 22 20 50 50 H 1.08990 * 109.47250 * 304.82849 * 30 28 15 51 51 H 1.09011 * 109.47070 * 64.82794 * 30 28 15 52 52 H 1.08999 * 109.47108 * 184.82473 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3588 1.2634 -0.7213 7 6 3.1383 0.9185 -2.1954 8 6 4.4667 0.8764 -2.9057 9 8 5.4888 1.1052 -2.2943 10 7 4.5184 0.5906 -4.2219 11 6 5.8093 0.5557 -4.9137 12 1 6.4752 1.3185 -4.5102 13 6 6.4511 -0.8408 -4.7802 14 6 6.5860 -1.3602 -6.2277 15 7 6.6117 -0.1333 -7.0649 16 6 6.2420 -0.4360 -8.4540 17 6 7.2982 -1.3133 -9.0751 18 8 8.3138 -1.5664 -8.4621 19 7 7.1144 -1.8167 -10.3117 20 6 8.0750 -2.6153 -10.8766 21 1 8.9792 -2.8407 -10.3308 22 6 7.8852 -3.1347 -12.1513 23 7 6.7851 -2.8600 -12.8156 24 14 9.1944 -4.2222 -12.9212 25 1 9.4029 -5.4226 -12.0722 26 1 8.7543 -4.6436 -14.2754 27 1 10.4671 -3.4646 -13.0283 28 6 5.6104 0.7624 -6.4306 29 1 4.6014 0.4732 -6.7246 30 6 5.8815 2.2195 -6.8106 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 2.8829 1.0775 1.9564 35 1 2.6605 2.7674 1.4425 36 1 1.2568 1.8015 1.9564 37 1 3.9931 0.5053 -0.2617 38 1 3.8426 2.2371 -0.6444 39 1 2.5040 1.6766 -2.6550 40 1 2.6546 -0.0552 -2.2723 41 1 3.7009 0.4081 -4.7110 42 1 7.4327 -0.7632 -4.3127 43 1 5.8064 -1.4996 -4.1984 44 1 7.5136 -1.9204 -6.3456 45 1 5.7308 -1.9832 -6.4892 46 1 5.2834 -0.9545 -8.4701 47 1 6.1623 0.4924 -9.0194 48 1 6.3020 -1.6146 -10.8018 49 1 6.6528 -3.2224 -13.7057 50 1 6.9072 2.4785 -6.5486 51 1 5.7369 2.3481 -7.8833 52 1 5.1933 2.8698 -6.2706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689287190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:09 Heat of formation + Delta-G solvation = -124.142413 kcal Electronic energy + Delta-G solvation = -29815.004311 eV Core-core repulsion = 25621.232922 eV Total energy + Delta-G solvation = -4193.771389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34459 -39.17480 -38.59049 -37.58127 -34.51570 -34.06382 -33.80547 -31.51601 -31.25534 -31.08452 -30.18960 -27.16812 -26.55269 -25.63841 -24.31932 -24.08069 -21.68964 -21.21298 -20.48072 -20.02762 -19.10661 -17.87227 -17.39119 -17.13184 -16.64832 -15.88345 -15.74103 -15.51331 -15.39924 -14.97289 -14.87100 -14.59097 -14.26614 -13.88830 -13.80650 -13.71782 -13.38227 -13.37344 -13.15550 -12.94056 -12.64247 -12.45635 -12.24702 -11.93857 -11.86438 -11.73902 -11.64433 -11.51275 -11.42482 -11.32408 -11.20717 -11.10160 -11.00296 -10.77747 -10.58909 -10.43757 -10.20849 -10.10517 -9.89865 -9.47800 -9.14910 -8.49475 -8.05783 -7.94149 -6.41287 -3.81945 2.50815 2.95352 3.20619 3.26185 3.30804 3.35921 3.91330 4.03303 4.23992 4.35549 4.40350 4.48256 4.63620 4.72749 4.81003 4.85482 4.91004 4.93775 5.04262 5.11023 5.17688 5.21219 5.24808 5.27870 5.29653 5.30174 5.39008 5.47734 5.49609 5.63806 5.66625 5.70433 5.73848 5.81513 5.90572 5.91756 5.93274 6.04367 6.18631 6.22275 6.31987 6.41621 6.49306 6.78908 7.12072 7.19383 7.35111 7.55563 8.06549 8.09115 8.62435 9.18759 9.54823 10.06994 10.76446 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.001707 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.249877 B =16403.457967 C =16720.379809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.539 6.539 10 N -0.725 5.725 11 C 0.146 3.854 12 H 0.100 0.900 13 C -0.132 4.132 14 C 0.037 3.963 15 N -0.476 5.476 16 C 0.036 3.964 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.051 3.949 29 H 0.053 0.947 30 C -0.135 4.135 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.398 0.602 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.391 0.609 49 H 0.272 0.728 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.467 10.352 21.399 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.179 4.179 8 C 0.300 3.700 9 O -0.415 6.415 10 N -0.377 5.377 11 C 0.041 3.959 12 H 0.118 0.882 13 C -0.171 4.171 14 C -0.090 4.090 15 N -0.201 5.201 16 C -0.096 4.096 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.058 4.058 29 H 0.071 0.929 30 C -0.193 4.193 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.232 0.768 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.437 10.362 22.021 28.297 hybrid contribution -1.493 -0.731 -1.200 2.050 sum -15.930 9.632 20.821 27.929 Atomic orbital electron populations 1.22784 0.81272 1.02773 0.99833 1.87956 1.19438 1.27841 1.95074 1.22211 0.94870 0.84621 0.95747 0.92131 1.22269 1.02311 1.01930 0.96729 1.21456 0.95597 1.03867 0.92934 1.21650 0.95234 1.04596 0.96456 1.20704 0.91523 0.75921 0.81890 1.90714 1.36361 1.48618 1.65840 1.46202 1.09774 1.71999 1.09714 1.21751 0.84571 0.98654 0.90956 0.88216 1.22741 1.01707 0.95559 0.97114 1.23163 1.02690 0.92292 0.90893 1.65149 1.42755 1.11575 1.00604 1.22067 0.96857 1.00250 0.90405 1.19674 0.88866 0.85171 0.83364 1.90517 1.29821 1.63013 1.62607 1.41851 1.20258 1.44226 1.13834 1.19652 1.00262 1.24220 0.98697 0.87966 1.25250 0.97634 0.98533 0.96509 1.69607 1.25731 1.45593 1.13488 0.85917 0.80397 0.80037 0.77865 1.19941 1.21004 1.19890 1.22879 0.94792 0.95498 0.92637 0.92914 1.21705 1.02571 0.93520 1.01509 0.94211 0.94038 0.89660 0.91539 0.91416 0.92556 0.90111 0.89781 0.89247 0.88283 0.76771 0.90313 0.91263 0.87974 0.94443 0.93461 0.89136 0.77551 0.91865 0.91321 0.92255 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.06 9.88 -35.23 -0.35 -3.40 16 3 C 0.08 0.55 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.31 7.79 -51.93 -0.40 -0.09 16 5 C -0.17 -1.03 9.53 37.16 0.35 -0.68 16 6 C -0.10 -0.79 4.21 -26.74 -0.11 -0.90 16 7 C -0.14 -1.01 5.60 -27.89 -0.16 -1.17 16 8 C 0.51 5.46 7.82 -10.98 -0.09 5.37 16 9 O -0.54 -7.91 15.68 5.56 0.09 -7.82 16 10 N -0.73 -6.95 5.04 -52.46 -0.26 -7.22 16 11 C 0.15 1.78 2.91 -66.55 -0.19 1.59 16 12 H 0.10 1.38 7.36 -51.93 -0.38 1.00 16 13 C -0.13 -1.81 6.78 -25.35 -0.17 -1.99 16 14 C 0.04 0.61 5.72 -2.18 -0.01 0.60 16 15 N -0.48 -7.85 4.77 -223.57 -1.07 -8.92 16 16 C 0.04 0.64 5.24 -4.98 -0.03 0.61 16 17 C 0.44 10.45 7.47 -10.99 -0.08 10.36 16 18 O -0.58 -15.55 14.39 5.54 0.08 -15.47 16 19 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.05 0.63 2.59 -66.07 -0.17 0.46 16 29 H 0.05 0.58 7.58 -51.93 -0.39 0.19 16 30 C -0.14 -1.53 9.31 37.16 0.35 -1.19 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.29 7.87 -51.93 -0.41 -0.11 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.08 0.67 8.10 -51.93 -0.42 0.24 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.68 7.82 -51.93 -0.41 0.27 16 41 H 0.40 2.79 8.34 -40.82 -0.34 2.45 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 44 H 0.10 1.99 6.85 -51.93 -0.36 1.64 16 45 H 0.04 0.59 7.88 -51.93 -0.41 0.18 16 46 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 47 H 0.09 1.46 7.43 -51.93 -0.39 1.07 16 48 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.67 7.51 -51.92 -0.39 0.28 16 52 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 419.74 15.07 6.33 6.33 Total: -1.00 -33.52 419.74 -8.24 -41.76 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -9.16 Total: 9.93 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 0.47 Total: 6.82 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.67 Total: -54.20 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.18 Total: -26.70 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.52 -8.24 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689287190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.384 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds