Wall clock time and date at job start Wed Apr 1 2020 01:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99710 * 2 1 4 4 H 1.09003 * 109.47417 * 330.00364 * 3 2 1 5 5 C 1.53003 * 109.47236 * 89.99802 * 3 2 1 6 6 C 1.52994 * 109.47228 * 210.00360 * 3 2 1 7 7 C 1.52990 * 109.47618 * 64.99595 * 6 3 2 8 8 C 1.50698 * 109.47502 * 180.02562 * 7 6 3 9 9 O 1.21276 * 120.00030 * 359.72538 * 8 7 6 10 10 N 1.34783 * 119.99800 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99591 * 179.72277 * 10 8 7 12 12 H 1.09000 * 110.29070 * 324.32558 * 11 10 8 13 13 C 1.54262 * 110.32288 * 86.45735 * 11 10 8 14 14 C 1.54377 * 105.06050 * 118.89305 * 13 11 10 15 15 N 1.48561 * 104.59567 * 23.85276 * 14 13 11 16 16 C 1.46902 * 111.00111 * 200.95991 * 15 14 13 17 17 C 1.50697 * 109.46988 * 293.84926 * 16 15 14 18 18 O 1.21301 * 119.99995 * 354.17650 * 17 16 15 19 19 N 1.34774 * 120.00289 * 174.17672 * 17 16 15 20 20 C 1.37097 * 120.00485 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99785 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00308 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99462 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47268 * 60.00407 * 24 22 20 26 26 H 1.48496 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47722 * 300.00571 * 24 22 20 28 28 C 1.48565 * 104.22141 * 320.51694 * 15 14 13 29 29 H 1.09001 * 110.41010 * 280.70596 * 28 15 14 30 30 C 1.52997 * 110.40981 * 158.25856 * 28 15 14 31 31 H 1.09002 * 109.47038 * 299.99417 * 1 2 3 32 32 H 1.08996 * 109.47439 * 59.99780 * 1 2 3 33 33 H 1.08995 * 109.46554 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46966 * 59.99953 * 5 3 2 35 35 H 1.08998 * 109.47069 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47409 * 300.00000 * 5 3 2 37 37 H 1.09007 * 109.46845 * 304.99590 * 6 3 2 38 38 H 1.08994 * 109.47449 * 185.00362 * 6 3 2 39 39 H 1.09007 * 109.47017 * 60.00100 * 7 6 3 40 40 H 1.09001 * 109.47130 * 300.00512 * 7 6 3 41 41 H 0.96996 * 120.00503 * 359.73117 * 10 8 7 42 42 H 1.08995 * 110.32459 * 237.79260 * 13 11 10 43 43 H 1.09003 * 110.31870 * 359.89657 * 13 11 10 44 44 H 1.09000 * 110.40979 * 142.63316 * 14 13 11 45 45 H 1.08996 * 110.41258 * 264.95707 * 14 13 11 46 46 H 1.08994 * 109.47069 * 53.84753 * 16 15 14 47 47 H 1.08991 * 109.47202 * 173.84899 * 16 15 14 48 48 H 0.97001 * 119.99723 * 359.97438 * 19 17 16 49 49 H 0.97003 * 119.99374 * 179.97438 * 23 22 20 50 50 H 1.08990 * 109.47250 * 304.82849 * 30 28 15 51 51 H 1.09011 * 109.47070 * 64.82794 * 30 28 15 52 52 H 1.08999 * 109.47108 * 184.82473 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3588 1.2634 -0.7213 7 6 3.1383 0.9185 -2.1954 8 6 4.4667 0.8764 -2.9057 9 8 5.4888 1.1052 -2.2943 10 7 4.5184 0.5906 -4.2219 11 6 5.8093 0.5557 -4.9137 12 1 6.4752 1.3185 -4.5102 13 6 6.4511 -0.8408 -4.7802 14 6 6.5860 -1.3602 -6.2277 15 7 6.6117 -0.1333 -7.0649 16 6 6.2420 -0.4360 -8.4540 17 6 7.2982 -1.3133 -9.0751 18 8 8.3138 -1.5664 -8.4621 19 7 7.1144 -1.8167 -10.3117 20 6 8.0750 -2.6153 -10.8766 21 1 8.9792 -2.8407 -10.3308 22 6 7.8852 -3.1347 -12.1513 23 7 6.7851 -2.8600 -12.8156 24 14 9.1944 -4.2222 -12.9212 25 1 9.4029 -5.4226 -12.0722 26 1 8.7543 -4.6436 -14.2754 27 1 10.4671 -3.4646 -13.0283 28 6 5.6104 0.7624 -6.4306 29 1 4.6014 0.4732 -6.7246 30 6 5.8815 2.2195 -6.8106 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 2.8829 1.0775 1.9564 35 1 2.6605 2.7674 1.4425 36 1 1.2568 1.8015 1.9564 37 1 3.9931 0.5053 -0.2617 38 1 3.8426 2.2371 -0.6444 39 1 2.5040 1.6766 -2.6550 40 1 2.6546 -0.0552 -2.2723 41 1 3.7009 0.4081 -4.7110 42 1 7.4327 -0.7632 -4.3127 43 1 5.8064 -1.4996 -4.1984 44 1 7.5136 -1.9204 -6.3456 45 1 5.7308 -1.9832 -6.4892 46 1 5.2834 -0.9545 -8.4701 47 1 6.1623 0.4924 -9.0194 48 1 6.3020 -1.6146 -10.8018 49 1 6.6528 -3.2224 -13.7057 50 1 6.9072 2.4785 -6.5486 51 1 5.7369 2.3481 -7.8833 52 1 5.1933 2.8698 -6.2706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689287190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:05 Heat of formation + Delta-G solvation = -149.856667 kcal Electronic energy + Delta-G solvation = -29816.119365 eV Core-core repulsion = 25621.232922 eV Total energy + Delta-G solvation = -4194.886442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.35149 -40.38858 -39.41841 -38.97661 -36.02875 -35.35762 -34.66542 -33.30773 -32.44588 -32.21260 -30.94430 -28.13945 -27.52945 -26.64538 -25.87008 -25.02011 -22.64811 -21.96339 -21.52512 -21.13715 -20.70979 -19.85113 -18.11567 -17.85559 -17.69214 -17.47958 -16.63431 -16.49241 -16.29316 -16.03576 -16.01748 -15.90128 -15.70002 -15.27094 -15.20632 -14.54101 -14.44607 -14.32631 -14.01747 -13.81682 -13.72558 -13.46907 -13.35607 -13.17131 -12.97995 -12.86305 -12.74634 -12.47409 -12.44220 -12.39601 -12.34223 -12.20192 -12.12738 -12.07851 -12.02376 -11.68274 -11.51126 -11.47004 -10.87974 -10.49330 -10.32224 -10.06930 -9.99776 -9.40882 -8.46049 -5.94345 1.39601 1.41617 1.52165 1.68301 2.06124 2.09736 2.30270 2.85781 2.92571 3.20667 3.31997 3.42153 3.76286 3.79388 3.84222 4.02883 4.14164 4.15089 4.22992 4.25993 4.33664 4.38574 4.42267 4.43361 4.53924 4.55156 4.55485 4.66039 4.70312 4.73830 4.81586 4.83943 4.90375 4.93321 5.01000 5.03367 5.04386 5.09680 5.13425 5.24716 5.34941 5.36614 5.41456 5.46946 5.82627 5.94549 6.09391 6.36080 6.58567 6.61869 7.14017 7.30520 7.57369 8.13975 8.71069 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.001707 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.249877 B =16403.457967 C =16720.379809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.085 3.915 4 H 0.082 0.918 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.155 3.845 12 H 0.083 0.917 13 C -0.124 4.124 14 C 0.041 3.959 15 N -0.501 5.501 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.058 3.942 29 H 0.081 0.919 30 C -0.133 4.133 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.415 0.585 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.050 0.950 51 H 0.063 0.937 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 11.328 21.113 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.028 3.972 4 H 0.100 0.900 5 C -0.233 4.233 6 C -0.138 4.138 7 C -0.168 4.168 8 C 0.299 3.701 9 O -0.464 6.464 10 N -0.364 5.364 11 C 0.049 3.951 12 H 0.101 0.899 13 C -0.164 4.164 14 C -0.087 4.087 15 N -0.226 5.226 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.050 4.050 29 H 0.099 0.901 30 C -0.191 4.191 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.253 0.747 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.131 0.869 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.331 11.349 21.719 30.015 hybrid contribution -0.611 -1.020 -1.046 1.584 sum -17.941 10.329 20.673 29.257 Atomic orbital electron populations 1.22939 0.79938 1.03450 1.00864 1.87926 1.21011 1.28629 1.95227 1.22216 0.94332 0.84699 0.95940 0.89975 1.22275 1.02485 1.01975 0.96537 1.21416 0.96085 1.02757 0.93537 1.21647 0.93431 1.06147 0.95575 1.21346 0.92199 0.74674 0.81848 1.90706 1.38249 1.50684 1.66808 1.46027 1.09426 1.71388 1.09525 1.21454 0.85542 0.96824 0.91258 0.89917 1.22644 1.01375 0.96888 0.95456 1.22989 1.00825 0.92367 0.92482 1.65074 1.45255 1.12085 1.00213 1.21923 0.95304 0.99982 0.90949 1.20757 0.89482 0.84528 0.82479 1.90498 1.32038 1.64315 1.63422 1.41906 1.20065 1.44526 1.14611 1.19602 1.00624 1.26402 0.99692 0.90513 1.25990 0.99597 0.99212 0.96309 1.69661 1.26649 1.45859 1.13816 0.85017 0.77862 0.78165 0.77460 1.19846 1.19377 1.19876 1.22931 0.95003 0.95189 0.91894 0.90113 1.21711 1.02219 0.93007 1.02115 0.93529 0.92618 0.89286 0.93046 0.90570 0.91708 0.92871 0.90103 0.85996 0.87355 0.74706 0.92034 0.90204 0.92234 0.93575 0.90895 0.86940 0.76980 0.91313 0.93098 0.91824 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.42 16 2 O -0.41 -5.79 9.88 -148.98 -1.47 -7.26 16 3 C 0.09 0.96 2.72 30.59 0.08 1.04 16 4 H 0.08 0.58 7.79 -2.39 -0.02 0.56 16 5 C -0.18 -1.87 9.53 71.98 0.69 -1.19 16 6 C -0.10 -1.46 4.21 30.59 0.13 -1.33 16 7 C -0.13 -1.53 5.60 29.84 0.17 -1.36 16 8 C 0.51 10.01 7.82 87.66 0.69 10.69 16 9 O -0.58 -17.12 15.68 -3.02 -0.05 -17.17 16 10 N -0.71 -11.82 5.04 -438.28 -2.21 -14.03 16 11 C 0.16 3.59 2.91 45.89 0.13 3.72 16 12 H 0.08 2.26 7.36 -2.39 -0.02 2.24 16 13 C -0.12 -3.42 6.78 31.49 0.21 -3.20 16 14 C 0.04 1.36 5.72 86.45 0.49 1.85 16 15 N -0.50 -16.12 4.77 -861.26 -4.11 -20.23 16 16 C 0.05 1.68 5.24 85.56 0.45 2.13 16 17 C 0.44 21.00 7.47 87.66 0.66 21.65 16 18 O -0.62 -34.62 14.39 -3.09 -0.04 -34.66 16 19 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 20 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 24 Si 0.99 43.14 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.06 1.30 2.59 45.06 0.12 1.42 16 29 H 0.08 1.41 7.58 -2.39 -0.02 1.39 16 30 C -0.13 -2.67 9.31 71.98 0.67 -2.00 16 31 H 0.05 0.30 7.87 -2.39 -0.02 0.29 16 32 H 0.06 0.29 8.08 -2.39 -0.02 0.27 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.57 7.87 -2.39 -0.02 0.55 16 37 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 38 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 39 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.11 1.17 7.82 -2.39 -0.02 1.15 16 41 H 0.42 4.16 8.34 -92.71 -0.77 3.39 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.00 7.95 -2.39 -0.02 1.98 16 44 H 0.06 2.46 6.85 -2.39 -0.02 2.44 16 45 H 0.05 1.41 7.88 -2.39 -0.02 1.39 16 46 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 47 H 0.11 3.34 7.43 -2.39 -0.02 3.32 16 48 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 49 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.23 7.51 -2.38 -0.02 1.22 16 52 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.71 419.74 -0.80 -76.51 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.59 Total: 35.14 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.99 Total: 16.51 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -7.66 Total: -114.23 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -1.56 Total: -59.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -75.71 -0.80 -76.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689287190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.351 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds