Wall clock time and date at job start Wed Apr 1 2020 00:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47678 * 2 1 4 4 O 1.42906 * 109.46857 * 120.00501 * 2 1 3 5 5 C 1.42894 * 114.00137 * 89.99681 * 4 2 1 6 6 C 1.50706 * 109.47263 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72605 * 6 5 4 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47161 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.50180 * 304.91582 * 10 9 8 12 12 C 1.53119 * 109.50791 * 64.99420 * 10 9 8 13 13 C 1.53115 * 109.16353 * 177.59583 * 12 10 9 14 14 C 1.53043 * 109.27716 * 302.34693 * 13 12 10 15 15 N 1.46846 * 109.52092 * 59.17964 * 14 13 12 16 16 C 1.46906 * 111.00058 * 174.15679 * 15 14 13 17 17 C 1.50696 * 109.47315 * 293.95927 * 16 15 14 18 18 O 1.21298 * 120.00124 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00384 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00371 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00102 * 359.97438 * 20 19 17 22 22 C 1.38958 * 120.00110 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99929 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99899 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46974 * 60.00360 * 24 22 20 26 26 H 1.48499 * 109.46865 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47429 * 300.00163 * 24 22 20 28 28 C 1.46846 * 111.20052 * 298.25300 * 15 14 13 29 29 H 1.08999 * 109.46394 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.47448 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46572 * 300.00188 * 1 2 3 32 32 H 1.09005 * 109.47269 * 239.99539 * 2 1 3 33 33 H 1.09005 * 109.47627 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47201 * 300.00141 * 3 2 1 35 35 H 1.09009 * 109.46927 * 59.99916 * 3 2 1 36 36 H 1.09001 * 109.47678 * 60.00187 * 5 4 2 37 37 H 1.08998 * 109.47532 * 300.00132 * 5 4 2 38 38 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.46587 * 299.99661 * 9 8 6 40 40 H 1.08998 * 109.47213 * 59.99069 * 9 8 6 41 41 H 1.08993 * 109.52179 * 297.50557 * 12 10 9 42 42 H 1.09000 * 109.51649 * 57.69212 * 12 10 9 43 43 H 1.08994 * 109.50408 * 62.28411 * 13 12 10 44 44 H 1.08996 * 109.50449 * 182.41268 * 13 12 10 45 45 H 1.09002 * 109.46146 * 179.19303 * 14 13 12 46 46 H 1.08995 * 109.46528 * 299.17602 * 14 13 12 47 47 H 1.09004 * 109.46730 * 53.95124 * 16 15 14 48 48 H 1.08995 * 109.47130 * 173.95343 * 16 15 14 49 49 H 0.97003 * 119.99766 * 359.97438 * 19 17 16 50 50 H 0.96998 * 119.99770 * 179.97438 * 23 22 20 51 51 H 1.08990 * 109.46401 * 301.73275 * 28 15 14 52 52 H 1.09003 * 109.46462 * 181.75832 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.1999 -2.0783 0.9886 6 6 2.7013 -2.6835 2.2745 7 8 2.8760 -1.9809 3.2476 8 7 2.9507 -4.0060 2.3446 9 6 3.4375 -4.5944 3.5949 10 6 3.6378 -6.0994 3.4062 11 1 2.7110 -6.5478 3.0485 12 6 4.7514 -6.3428 2.3838 13 6 4.9864 -7.8495 2.2457 14 6 5.3405 -8.4333 3.6154 15 7 4.2438 -8.1750 4.5573 16 6 4.4872 -8.8407 5.8440 17 6 4.4503 -10.3349 5.6516 18 8 4.2413 -10.7997 4.5509 19 7 4.6496 -11.1548 6.7025 20 6 4.6155 -12.5141 6.5275 21 1 4.4285 -12.9279 5.5477 22 6 4.8214 -13.3595 7.6110 23 7 5.0484 -12.8560 8.8034 24 14 4.7742 -15.2116 7.3727 25 1 5.8228 -15.6124 6.4005 26 1 5.0212 -15.8844 8.6733 27 1 3.4408 -15.6103 6.8550 28 6 4.0310 -6.7339 4.7423 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1302 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 2.9318 -2.2469 0.1986 37 1 1.2537 -2.5434 0.7124 38 1 2.8072 -4.5686 1.5675 39 1 4.3862 -4.1327 3.8684 40 1 2.7079 -4.4216 4.3860 41 1 4.4566 -5.9301 1.4191 42 1 5.6684 -5.8606 2.7225 43 1 4.0809 -8.3261 1.8701 44 1 5.8072 -8.0276 1.5511 45 1 5.4944 -9.5084 3.5232 46 1 6.2534 -7.9660 3.9844 47 1 5.4654 -8.5476 6.2253 48 1 3.7165 -8.5469 6.5566 49 1 4.8171 -10.7831 7.5827 50 1 5.1918 -13.4461 9.5598 51 1 4.9502 -6.2748 5.1058 52 1 3.2338 -6.5748 5.4685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690376135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:36 Heat of formation + Delta-G solvation = -127.712614 kcal Electronic energy + Delta-G solvation = -29378.199182 eV Core-core repulsion = 25184.272977 eV Total energy + Delta-G solvation = -4193.926204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.22513 -39.31136 -38.40792 -37.69116 -35.36962 -33.92246 -33.24765 -32.91511 -31.47110 -31.16530 -28.59983 -27.65960 -27.41725 -25.50694 -24.63953 -22.84286 -21.83718 -21.72904 -20.89790 -19.67118 -19.15135 -17.86982 -17.49208 -17.45855 -16.49653 -16.16381 -15.75475 -15.53692 -15.10919 -15.05110 -14.83999 -14.61629 -14.19503 -14.16925 -13.93991 -13.71534 -13.40861 -13.36408 -13.28142 -13.04455 -12.68478 -12.65361 -12.46670 -12.37743 -12.14037 -11.88504 -11.84156 -11.49846 -11.41038 -11.19975 -11.06927 -11.01652 -10.68314 -10.45058 -10.36369 -10.30734 -10.20552 -10.12840 -10.03000 -9.45041 -9.33527 -8.42443 -7.96976 -7.83229 -6.41025 -3.81862 2.33786 2.45621 3.20136 3.25980 3.30059 3.54787 3.90980 3.97273 4.23356 4.30021 4.47435 4.54159 4.61247 4.65422 4.69829 4.72045 4.77272 4.79599 5.05599 5.13666 5.22250 5.23957 5.25696 5.32212 5.32992 5.37668 5.41589 5.48869 5.54097 5.62013 5.71209 5.71915 5.75420 5.75820 5.86917 5.93597 5.99568 6.05737 6.07361 6.18780 6.29157 6.45101 6.54177 6.66134 7.18679 7.31189 7.43774 7.55495 7.94134 8.06951 8.62664 9.18690 9.55389 10.07269 10.76640 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035775 B = 0.001503 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.480406 B =18622.255632 C =18803.625784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.512 3.488 7 O -0.519 6.519 8 N -0.726 5.726 9 C 0.127 3.873 10 C -0.095 4.095 11 H 0.088 0.912 12 C -0.115 4.115 13 C -0.113 4.113 14 C 0.051 3.949 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.063 3.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.020 0.980 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.033 0.967 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 23.402 -16.774 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.394 6.394 8 N -0.380 5.380 9 C 0.003 3.997 10 C -0.114 4.114 11 H 0.106 0.894 12 C -0.152 4.152 13 C -0.150 4.150 14 C -0.077 4.077 15 N -0.238 5.238 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.066 4.066 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.121 0.879 46 H 0.039 0.961 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.051 0.949 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.837 23.409 -16.620 29.114 hybrid contribution 0.662 -0.833 0.317 1.110 sum -4.175 22.577 -16.303 28.159 Atomic orbital electron populations 1.22320 0.95753 1.02483 1.02881 1.22186 0.93853 0.94072 0.87775 1.21858 1.01965 0.94201 1.02697 1.88074 1.86600 1.17631 1.35307 1.22228 1.01236 0.84307 0.95848 1.20240 0.78145 0.82188 0.89778 1.90747 1.50512 1.60546 1.37588 1.45884 1.68490 1.07983 1.15670 1.21389 0.99909 0.92610 0.85771 1.21403 1.00405 0.92838 0.96750 0.89359 1.21669 0.98123 0.97264 0.98184 1.21536 1.02139 0.94334 0.97036 1.22272 0.90253 1.03521 0.91632 1.61454 1.43990 1.08178 1.10179 1.21834 1.00614 0.94803 0.91225 1.19734 0.84384 0.87246 0.85704 1.90480 1.54042 1.76857 1.24843 1.41862 1.62412 1.06415 1.09376 1.19646 1.45858 0.80756 0.96670 0.87979 1.25254 0.97238 1.00683 0.94708 1.69605 1.48701 1.36375 0.99634 0.85924 0.78985 0.82037 0.77301 1.19948 1.20996 1.19911 1.21987 1.00220 0.88364 0.95987 0.91461 0.92445 0.91509 0.92018 0.91857 0.91090 0.91547 0.90293 0.90298 0.76424 0.91321 0.91096 0.92286 0.92180 0.90870 0.91828 0.87874 0.96133 0.93507 0.89338 0.77495 0.91836 0.94906 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 9.53 37.16 0.35 -0.62 16 2 C 0.08 0.51 3.34 -26.73 -0.09 0.42 16 3 C -0.15 -0.86 9.56 37.16 0.36 -0.51 16 4 O -0.36 -3.52 9.52 -55.14 -0.52 -4.04 16 5 C 0.04 0.32 6.23 36.01 0.22 0.54 16 6 C 0.51 5.33 7.91 -10.98 -0.09 5.25 16 7 O -0.52 -7.97 16.50 -14.36 -0.24 -8.21 16 8 N -0.73 -5.90 5.31 -60.29 -0.32 -6.22 16 9 C 0.13 1.21 5.07 -4.04 -0.02 1.19 16 10 C -0.09 -0.94 2.39 -90.54 -0.22 -1.16 16 11 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.11 -1.10 5.13 -26.61 -0.14 -1.24 16 13 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 14 C 0.05 0.79 5.11 -3.83 -0.02 0.78 16 15 N -0.51 -8.24 4.39 -236.11 -1.04 -9.28 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.32 7.46 -10.99 -0.08 10.24 16 18 O -0.58 -15.23 13.92 5.54 0.08 -15.15 16 19 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.29 7.79 -51.93 -0.40 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.40 2.17 7.67 -40.82 -0.31 1.86 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.44 7.25 -51.93 -0.38 0.07 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.01 5.80 -51.93 -0.30 1.70 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 48 H 0.09 1.42 7.98 -51.93 -0.41 1.00 16 49 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 LS Contribution 417.70 15.07 6.29 6.29 Total: -1.00 -34.35 417.70 -9.48 -43.83 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -9.21 Total: 7.84 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.17 Total: 6.97 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.69 Total: -53.47 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.68 Total: -27.40 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.35 -9.48 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690376135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.879 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds