Wall clock time and date at job start Wed Apr 1 2020 00:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47678 * 2 1 4 4 O 1.42906 * 109.46857 * 120.00501 * 2 1 3 5 5 C 1.42894 * 114.00137 * 89.99681 * 4 2 1 6 6 C 1.50706 * 109.47263 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72605 * 6 5 4 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47161 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.50180 * 304.91582 * 10 9 8 12 12 C 1.53119 * 109.50791 * 64.99420 * 10 9 8 13 13 C 1.53115 * 109.16353 * 177.59583 * 12 10 9 14 14 C 1.53043 * 109.27716 * 302.34693 * 13 12 10 15 15 N 1.46846 * 109.52092 * 59.17964 * 14 13 12 16 16 C 1.46906 * 111.00058 * 174.15679 * 15 14 13 17 17 C 1.50696 * 109.47315 * 293.95927 * 16 15 14 18 18 O 1.21298 * 120.00124 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00384 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00371 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00102 * 359.97438 * 20 19 17 22 22 C 1.38958 * 120.00110 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99929 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99899 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46974 * 60.00360 * 24 22 20 26 26 H 1.48499 * 109.46865 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47429 * 300.00163 * 24 22 20 28 28 C 1.46846 * 111.20052 * 298.25300 * 15 14 13 29 29 H 1.08999 * 109.46394 * 59.99692 * 1 2 3 30 30 H 1.08997 * 109.47448 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46572 * 300.00188 * 1 2 3 32 32 H 1.09005 * 109.47269 * 239.99539 * 2 1 3 33 33 H 1.09005 * 109.47627 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47201 * 300.00141 * 3 2 1 35 35 H 1.09009 * 109.46927 * 59.99916 * 3 2 1 36 36 H 1.09001 * 109.47678 * 60.00187 * 5 4 2 37 37 H 1.08998 * 109.47532 * 300.00132 * 5 4 2 38 38 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.46587 * 299.99661 * 9 8 6 40 40 H 1.08998 * 109.47213 * 59.99069 * 9 8 6 41 41 H 1.08993 * 109.52179 * 297.50557 * 12 10 9 42 42 H 1.09000 * 109.51649 * 57.69212 * 12 10 9 43 43 H 1.08994 * 109.50408 * 62.28411 * 13 12 10 44 44 H 1.08996 * 109.50449 * 182.41268 * 13 12 10 45 45 H 1.09002 * 109.46146 * 179.19303 * 14 13 12 46 46 H 1.08995 * 109.46528 * 299.17602 * 14 13 12 47 47 H 1.09004 * 109.46730 * 53.95124 * 16 15 14 48 48 H 1.08995 * 109.47130 * 173.95343 * 16 15 14 49 49 H 0.97003 * 119.99766 * 359.97438 * 19 17 16 50 50 H 0.96998 * 119.99770 * 179.97438 * 23 22 20 51 51 H 1.08990 * 109.46401 * 301.73275 * 28 15 14 52 52 H 1.09003 * 109.46462 * 181.75832 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.1999 -2.0783 0.9886 6 6 2.7013 -2.6835 2.2745 7 8 2.8760 -1.9809 3.2476 8 7 2.9507 -4.0060 2.3446 9 6 3.4375 -4.5944 3.5949 10 6 3.6378 -6.0994 3.4062 11 1 2.7110 -6.5478 3.0485 12 6 4.7514 -6.3428 2.3838 13 6 4.9864 -7.8495 2.2457 14 6 5.3405 -8.4333 3.6154 15 7 4.2438 -8.1750 4.5573 16 6 4.4872 -8.8407 5.8440 17 6 4.4503 -10.3349 5.6516 18 8 4.2413 -10.7997 4.5509 19 7 4.6496 -11.1548 6.7025 20 6 4.6155 -12.5141 6.5275 21 1 4.4285 -12.9279 5.5477 22 6 4.8214 -13.3595 7.6110 23 7 5.0484 -12.8560 8.8034 24 14 4.7742 -15.2116 7.3727 25 1 5.8228 -15.6124 6.4005 26 1 5.0212 -15.8844 8.6733 27 1 3.4408 -15.6103 6.8550 28 6 4.0310 -6.7339 4.7423 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1302 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 2.9318 -2.2469 0.1986 37 1 1.2537 -2.5434 0.7124 38 1 2.8072 -4.5686 1.5675 39 1 4.3862 -4.1327 3.8684 40 1 2.7079 -4.4216 4.3860 41 1 4.4566 -5.9301 1.4191 42 1 5.6684 -5.8606 2.7225 43 1 4.0809 -8.3261 1.8701 44 1 5.8072 -8.0276 1.5511 45 1 5.4944 -9.5084 3.5232 46 1 6.2534 -7.9660 3.9844 47 1 5.4654 -8.5476 6.2253 48 1 3.7165 -8.5469 6.5566 49 1 4.8171 -10.7831 7.5827 50 1 5.1918 -13.4461 9.5598 51 1 4.9502 -6.2748 5.1058 52 1 3.2338 -6.5748 5.4685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690376135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:35 Heat of formation + Delta-G solvation = -153.009250 kcal Electronic energy + Delta-G solvation = -29379.296126 eV Core-core repulsion = 25184.272977 eV Total energy + Delta-G solvation = -4195.023149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07021 -40.55424 -39.41790 -38.86216 -36.44904 -35.80720 -34.08912 -33.68809 -33.21852 -32.36565 -29.38899 -28.82871 -28.05466 -26.51859 -26.28198 -23.99107 -22.84488 -22.23161 -21.66937 -20.95554 -20.62500 -19.84737 -18.23454 -18.05691 -17.74391 -17.11624 -16.68714 -16.66813 -16.47621 -16.25441 -15.92248 -15.69874 -15.63807 -15.22344 -14.94250 -14.89326 -14.73491 -14.35567 -13.99005 -13.83027 -13.65915 -13.56326 -13.45827 -13.25191 -13.05387 -13.03712 -12.87644 -12.85550 -12.63197 -12.42186 -12.33784 -12.12473 -12.03529 -11.63720 -11.61062 -11.56945 -11.32459 -11.24959 -10.88107 -10.62878 -10.22511 -10.10505 -9.98279 -9.17408 -8.45097 -5.93770 1.40343 1.42023 1.52928 1.58255 1.82025 2.07208 2.29338 2.75365 3.05441 3.21755 3.40347 3.69309 3.79631 3.83272 3.92103 4.03383 4.11712 4.21565 4.23592 4.30066 4.30420 4.34364 4.39327 4.43756 4.50524 4.52337 4.57022 4.65797 4.73009 4.76159 4.81556 4.84148 4.92374 4.95512 4.96168 5.06058 5.10427 5.20365 5.30281 5.30608 5.34170 5.39600 5.42064 5.52846 5.91914 6.11669 6.17895 6.27695 6.56772 6.62302 7.14379 7.23740 7.58254 8.14056 8.72105 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035775 B = 0.001503 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.480406 B =18622.255632 C =18803.625784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.151 4.151 4 O -0.395 6.395 5 C 0.045 3.955 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.711 5.711 9 C 0.135 3.865 10 C -0.082 4.082 11 H 0.088 0.912 12 C -0.107 4.107 13 C -0.106 4.106 14 C 0.050 3.950 15 N -0.529 5.529 16 C 0.057 3.943 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.061 3.939 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.041 0.959 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 24.242 -18.465 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.315 6.315 5 C -0.035 4.035 6 C 0.295 3.705 7 O -0.457 6.457 8 N -0.365 5.365 9 C 0.011 3.989 10 C -0.101 4.101 11 H 0.106 0.894 12 C -0.145 4.145 13 C -0.144 4.144 14 C -0.078 4.078 15 N -0.254 5.254 16 C -0.074 4.074 17 C 0.229 3.771 18 O -0.498 6.498 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.067 4.067 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.081 0.919 48 H 0.127 0.873 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.059 0.941 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.151 24.245 -18.340 30.834 hybrid contribution 0.757 -1.068 0.804 1.536 sum -4.394 23.178 -17.536 29.394 Atomic orbital electron populations 1.22314 0.95271 1.02768 1.02908 1.22398 0.94284 0.94111 0.87622 1.21898 1.01601 0.94331 1.02994 1.88037 1.87084 1.18989 1.37359 1.22379 1.03230 0.83385 0.94480 1.20902 0.77096 0.82297 0.90245 1.90723 1.53212 1.61937 1.39785 1.45743 1.67345 1.07657 1.15767 1.21188 0.99430 0.92033 0.86261 1.21262 1.00527 0.92749 0.95598 0.89398 1.21635 0.98137 0.95136 0.99557 1.21485 1.02006 0.95991 0.94949 1.22197 0.90778 1.01039 0.93751 1.61437 1.44207 1.10489 1.09277 1.21714 1.02235 0.90643 0.92845 1.20742 0.82180 0.89540 0.84600 1.90457 1.54960 1.78249 1.26135 1.41938 1.63315 1.06003 1.10016 1.19631 1.47962 0.82397 0.96269 0.90239 1.26028 0.96253 1.04771 0.94186 1.69672 1.48616 1.37865 1.00097 0.84995 0.78892 0.76786 0.77705 1.19683 1.19587 1.19724 1.22102 1.00922 0.85974 0.97742 0.89675 0.92023 0.93232 0.89691 0.92445 0.88915 0.93130 0.87203 0.87703 0.74469 0.91931 0.92009 0.89310 0.91823 0.92097 0.90522 0.92361 0.95435 0.91906 0.87345 0.77132 0.91368 0.94080 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.53 71.98 0.69 -0.93 16 2 C 0.07 0.79 3.34 30.59 0.10 0.90 16 3 C -0.15 -1.58 9.56 71.98 0.69 -0.89 16 4 O -0.40 -7.28 9.52 -129.94 -1.24 -8.52 16 5 C 0.04 0.53 6.23 71.24 0.44 0.98 16 6 C 0.51 9.77 7.91 87.66 0.69 10.47 16 7 O -0.58 -17.71 16.50 16.00 0.26 -17.44 16 8 N -0.71 -9.77 5.31 -463.05 -2.46 -12.23 16 9 C 0.14 2.31 5.07 86.38 0.44 2.75 16 10 C -0.08 -1.45 2.39 -10.74 -0.03 -1.47 16 11 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 12 C -0.11 -1.74 5.13 30.67 0.16 -1.59 16 13 C -0.11 -2.45 6.09 30.65 0.19 -2.26 16 14 C 0.05 1.56 5.11 86.33 0.44 2.00 16 15 N -0.53 -16.61 4.39 -900.92 -3.96 -20.57 16 16 C 0.06 1.98 5.45 85.55 0.47 2.45 16 17 C 0.44 21.06 7.46 87.66 0.65 21.71 16 18 O -0.61 -33.43 13.92 -3.09 -0.04 -33.47 16 19 N -0.58 -29.68 5.29 -306.99 -1.62 -31.30 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 23 N -0.92 -50.00 13.05 21.67 0.28 -49.72 16 24 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 C 0.06 1.38 4.74 86.33 0.41 1.79 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 31 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.09 0.51 7.79 -2.38 -0.02 0.49 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.11 0.62 8.09 -2.39 -0.02 0.60 16 37 H 0.11 0.70 7.87 -2.39 -0.02 0.68 16 38 H 0.42 3.00 7.67 -92.71 -0.71 2.29 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.09 0.96 7.25 -2.39 -0.02 0.94 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 2.35 5.80 -2.39 -0.01 2.34 16 46 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 48 H 0.11 3.35 7.98 -2.39 -0.02 3.33 16 49 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 50 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 51 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.08 1.79 8.01 -2.39 -0.02 1.77 16 Total: -1.00 -77.96 417.70 -0.65 -78.61 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.53 Total: 32.07 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.62 Total: 17.55 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -7.75 Total: -113.81 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -1.02 Total: -59.43 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -77.96 -0.65 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690376135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.396 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds