Wall clock time and date at job start Wed Apr 1 2020 00:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 O 1.42902 * 109.46960 * 120.00127 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.50703 * 109.47171 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47194 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.50438 * 55.07712 * 10 9 8 12 12 C 1.53123 * 109.50317 * 294.99560 * 10 9 8 13 13 C 1.53119 * 109.16186 * 182.40369 * 12 10 9 14 14 C 1.53038 * 109.27644 * 57.65760 * 13 12 10 15 15 N 1.46847 * 109.52303 * 300.81781 * 14 13 12 16 16 C 1.46899 * 111.00038 * 185.83612 * 15 14 13 17 17 C 1.50704 * 109.46746 * 66.04984 * 16 15 14 18 18 O 1.21294 * 119.99888 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00131 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00273 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99971 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00050 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99790 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00212 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47170 * 89.99595 * 24 22 20 26 26 H 1.48493 * 109.47330 * 209.99654 * 24 22 20 27 27 H 1.48494 * 109.46908 * 330.00083 * 24 22 20 28 28 C 1.46853 * 111.19413 * 61.74488 * 15 14 13 29 29 H 1.09005 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47596 * 300.00122 * 1 2 3 31 31 H 1.09000 * 109.47046 * 60.00105 * 1 2 3 32 32 H 1.08997 * 109.47052 * 239.99658 * 2 1 3 33 33 H 1.09007 * 109.47109 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47510 * 299.99618 * 3 2 1 35 35 H 1.09005 * 109.46981 * 60.00290 * 3 2 1 36 36 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 37 37 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 38 38 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47021 * 299.99722 * 9 8 6 40 40 H 1.09001 * 109.47001 * 59.99554 * 9 8 6 41 41 H 1.08997 * 109.52380 * 302.31435 * 12 10 9 42 42 H 1.09005 * 109.51795 * 62.49905 * 12 10 9 43 43 H 1.09003 * 109.50187 * 177.59835 * 13 12 10 44 44 H 1.08999 * 109.50158 * 297.71572 * 13 12 10 45 45 H 1.08997 * 109.46310 * 60.83699 * 14 13 12 46 46 H 1.08996 * 109.46205 * 180.80304 * 14 13 12 47 47 H 1.08999 * 109.47421 * 186.04455 * 16 15 14 48 48 H 1.08999 * 109.47704 * 306.05206 * 16 15 14 49 49 H 0.97006 * 119.99926 * 359.97438 * 19 17 16 50 50 H 0.97003 * 119.99928 * 180.02562 * 23 22 20 51 51 H 1.09006 * 109.46005 * 178.24013 * 28 15 14 52 52 H 1.08989 * 109.46386 * 58.27760 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1999 -2.0782 0.9887 6 6 2.7001 -2.6835 2.2750 7 8 2.8740 -1.9811 3.2483 8 7 2.9550 -4.0051 2.3435 9 6 3.4407 -4.5936 3.5941 10 6 3.6482 -6.0974 3.4033 11 1 4.3134 -6.2685 2.5570 12 6 2.2985 -6.7699 3.1370 13 6 2.5071 -8.2813 3.0071 14 6 3.1599 -8.8129 4.2850 15 7 4.4478 -8.1393 4.4950 16 6 5.1667 -8.7220 5.6359 17 6 5.5535 -10.1424 5.3135 18 8 5.2595 -10.6219 4.2388 19 7 6.2269 -10.8795 6.2188 20 6 6.5783 -12.1719 5.9257 21 1 6.3158 -12.5992 4.9691 22 6 7.2730 -12.9316 6.8589 23 7 7.6094 -14.1705 6.5781 24 14 7.7276 -12.1924 8.5130 25 1 6.6356 -12.4480 9.4864 26 1 8.9839 -12.8133 9.0043 27 1 7.9246 -10.7282 8.3635 28 6 4.2678 -6.6924 4.6698 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8901 36 1 1.2536 -2.5434 0.7125 37 1 2.9319 -2.2468 0.1987 38 1 2.8163 -4.5668 1.5649 39 1 4.3866 -4.1283 3.8714 40 1 2.7079 -4.4255 4.3834 41 1 1.6200 -6.5657 3.9652 42 1 1.8735 -6.3800 2.2121 43 1 1.5440 -8.7702 2.8598 44 1 3.1546 -8.4873 2.1548 45 1 2.5057 -8.6189 5.1349 46 1 3.3228 -9.8865 4.1901 47 1 6.0647 -8.1376 5.8363 48 1 4.5226 -8.7115 6.5151 49 1 6.4630 -10.4957 7.0778 50 1 8.0941 -14.7011 7.2297 51 1 5.2355 -6.2258 4.8544 52 1 3.6085 -6.5083 5.5179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690376136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:39 Heat of formation + Delta-G solvation = -120.628077 kcal Electronic energy + Delta-G solvation = -29439.116360 eV Core-core repulsion = 25245.497364 eV Total energy + Delta-G solvation = -4193.618996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26259 -39.40305 -38.46187 -37.83693 -35.43261 -33.97866 -33.27188 -32.99193 -31.68620 -31.44808 -28.64329 -27.72166 -27.56532 -25.55407 -24.56686 -22.83629 -21.85557 -21.74585 -20.92984 -19.72471 -19.34694 -18.27834 -17.53552 -17.47959 -16.49206 -16.23954 -15.84326 -15.49659 -15.27365 -15.02208 -14.91813 -14.81426 -14.43321 -14.17716 -13.83838 -13.59684 -13.57155 -13.34345 -13.22997 -13.02027 -12.78727 -12.66536 -12.54294 -12.44445 -12.31221 -12.12668 -11.90926 -11.81854 -11.55772 -11.21711 -11.15852 -11.12228 -10.73723 -10.59828 -10.42786 -10.37061 -10.15060 -10.06600 -9.97386 -9.52552 -9.37065 -8.55835 -8.18202 -7.95088 -6.31384 -3.82675 2.30880 2.42701 3.02846 3.06722 3.15204 3.51970 3.73832 3.89363 4.10245 4.27699 4.45510 4.50798 4.55879 4.63041 4.67246 4.68285 4.72201 4.75059 4.79887 5.11849 5.17131 5.20901 5.21875 5.27345 5.30735 5.34709 5.36219 5.41450 5.48698 5.54179 5.60494 5.65724 5.69813 5.73895 5.77581 5.83838 5.91180 5.95553 6.00263 6.02622 6.14341 6.39713 6.48273 6.64073 7.15310 7.19173 7.34143 7.58660 7.91029 8.14469 8.60239 8.95169 9.42518 9.83572 10.81741 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032715 B = 0.001571 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.660665 B =17815.779619 C =18280.220496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.512 3.488 7 O -0.520 6.520 8 N -0.726 5.726 9 C 0.127 3.873 10 C -0.095 4.095 11 H 0.089 0.911 12 C -0.115 4.115 13 C -0.113 4.113 14 C 0.050 3.950 15 N -0.514 5.514 16 C 0.044 3.956 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.063 3.937 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.022 0.978 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.076 0.924 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.326 26.235 -11.050 31.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.394 6.394 8 N -0.380 5.380 9 C 0.003 3.997 10 C -0.114 4.114 11 H 0.107 0.893 12 C -0.153 4.153 13 C -0.151 4.151 14 C -0.078 4.078 15 N -0.238 5.238 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.065 4.065 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.040 0.960 46 H 0.122 0.878 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.095 0.905 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.971 26.247 -11.232 31.358 hybrid contribution -0.118 0.065 1.529 1.535 sum -13.089 26.311 -9.703 30.948 Atomic orbital electron populations 1.22320 0.95773 1.02448 1.02879 1.22185 0.93828 0.94093 0.87785 1.21858 1.02001 0.94178 1.02690 1.88073 1.86606 1.17623 1.35321 1.22229 1.01243 0.84310 0.95848 1.20243 0.78134 0.82156 0.89786 1.90745 1.50564 1.60502 1.37602 1.45881 1.68562 1.08099 1.15504 1.21381 0.99955 0.92562 0.85766 1.21405 0.98007 0.92054 0.99955 0.89289 1.21674 0.96047 0.96274 1.01259 1.21538 1.00254 0.94245 0.99032 1.22287 0.87967 1.01747 0.95757 1.61450 1.20743 1.01428 1.40186 1.21869 0.99012 0.95955 0.91948 1.19641 0.83735 0.86908 0.85844 1.90523 1.57236 1.72558 1.23770 1.42220 1.51793 1.13461 1.15620 1.19423 1.33485 0.85857 1.04550 0.86276 1.25028 0.97260 0.95528 0.98288 1.69621 1.39069 1.07740 1.35751 0.86680 0.79246 0.79186 0.84335 1.19684 1.20181 1.19471 1.21990 1.00177 0.88946 0.95420 0.92476 0.91538 0.91441 0.91982 0.91828 0.91077 0.91563 0.90345 0.90205 0.76394 0.91108 0.91345 0.92175 0.92220 0.91719 0.90785 0.96028 0.87827 0.89201 0.93374 0.79728 0.91633 0.90528 0.94861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 9.53 37.16 0.35 -0.57 16 2 C 0.08 0.49 3.34 -26.73 -0.09 0.40 16 3 C -0.15 -0.85 9.56 37.16 0.36 -0.49 16 4 O -0.36 -3.44 9.52 -55.14 -0.52 -3.97 16 5 C 0.04 0.31 6.23 36.01 0.22 0.53 16 6 C 0.51 5.18 7.91 -10.98 -0.09 5.10 16 7 O -0.52 -7.81 16.50 -14.35 -0.24 -8.05 16 8 N -0.73 -5.65 5.31 -60.30 -0.32 -5.97 16 9 C 0.13 1.15 5.07 -4.05 -0.02 1.13 16 10 C -0.10 -0.89 2.39 -90.54 -0.22 -1.11 16 11 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.11 -1.05 5.13 -26.61 -0.14 -1.19 16 13 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 14 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 15 N -0.51 -7.83 4.39 -236.11 -1.04 -8.87 16 16 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 17 C 0.45 10.08 7.46 -10.98 -0.08 10.00 16 18 O -0.56 -14.52 13.92 5.55 0.08 -14.44 16 19 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 20 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C 0.06 0.73 4.74 -3.83 -0.02 0.71 16 29 H 0.06 0.28 7.87 -51.93 -0.41 -0.13 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 7.79 -51.93 -0.40 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 37 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.40 2.04 7.67 -40.82 -0.31 1.73 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.43 7.25 -51.93 -0.38 0.05 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 1.95 5.80 -51.93 -0.30 1.65 16 47 H 0.09 1.30 7.98 -51.93 -0.41 0.89 16 48 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 49 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 50 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 52 H 0.03 0.37 8.14 -51.94 -0.42 -0.06 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -35.63 414.57 -9.13 -44.76 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -9.17 Total: 7.75 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.17 Total: 6.80 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.64 Total: -53.66 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.68 Total: -26.46 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.63 -9.13 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690376136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.865 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds