Wall clock time and date at job start Wed Apr 1 2020 00:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 O 1.42902 * 109.46960 * 120.00127 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.50703 * 109.47171 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47194 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.50438 * 55.07712 * 10 9 8 12 12 C 1.53123 * 109.50317 * 294.99560 * 10 9 8 13 13 C 1.53119 * 109.16186 * 182.40369 * 12 10 9 14 14 C 1.53038 * 109.27644 * 57.65760 * 13 12 10 15 15 N 1.46847 * 109.52303 * 300.81781 * 14 13 12 16 16 C 1.46899 * 111.00038 * 185.83612 * 15 14 13 17 17 C 1.50704 * 109.46746 * 66.04984 * 16 15 14 18 18 O 1.21294 * 119.99888 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00131 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00273 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99971 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00050 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99790 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00212 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47170 * 89.99595 * 24 22 20 26 26 H 1.48493 * 109.47330 * 209.99654 * 24 22 20 27 27 H 1.48494 * 109.46908 * 330.00083 * 24 22 20 28 28 C 1.46853 * 111.19413 * 61.74488 * 15 14 13 29 29 H 1.09005 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47596 * 300.00122 * 1 2 3 31 31 H 1.09000 * 109.47046 * 60.00105 * 1 2 3 32 32 H 1.08997 * 109.47052 * 239.99658 * 2 1 3 33 33 H 1.09007 * 109.47109 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47510 * 299.99618 * 3 2 1 35 35 H 1.09005 * 109.46981 * 60.00290 * 3 2 1 36 36 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 37 37 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 38 38 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47021 * 299.99722 * 9 8 6 40 40 H 1.09001 * 109.47001 * 59.99554 * 9 8 6 41 41 H 1.08997 * 109.52380 * 302.31435 * 12 10 9 42 42 H 1.09005 * 109.51795 * 62.49905 * 12 10 9 43 43 H 1.09003 * 109.50187 * 177.59835 * 13 12 10 44 44 H 1.08999 * 109.50158 * 297.71572 * 13 12 10 45 45 H 1.08997 * 109.46310 * 60.83699 * 14 13 12 46 46 H 1.08996 * 109.46205 * 180.80304 * 14 13 12 47 47 H 1.08999 * 109.47421 * 186.04455 * 16 15 14 48 48 H 1.08999 * 109.47704 * 306.05206 * 16 15 14 49 49 H 0.97006 * 119.99926 * 359.97438 * 19 17 16 50 50 H 0.97003 * 119.99928 * 180.02562 * 23 22 20 51 51 H 1.09006 * 109.46005 * 178.24013 * 28 15 14 52 52 H 1.08989 * 109.46386 * 58.27760 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1999 -2.0782 0.9887 6 6 2.7001 -2.6835 2.2750 7 8 2.8740 -1.9811 3.2483 8 7 2.9550 -4.0051 2.3435 9 6 3.4407 -4.5936 3.5941 10 6 3.6482 -6.0974 3.4033 11 1 4.3134 -6.2685 2.5570 12 6 2.2985 -6.7699 3.1370 13 6 2.5071 -8.2813 3.0071 14 6 3.1599 -8.8129 4.2850 15 7 4.4478 -8.1393 4.4950 16 6 5.1667 -8.7220 5.6359 17 6 5.5535 -10.1424 5.3135 18 8 5.2595 -10.6219 4.2388 19 7 6.2269 -10.8795 6.2188 20 6 6.5783 -12.1719 5.9257 21 1 6.3158 -12.5992 4.9691 22 6 7.2730 -12.9316 6.8589 23 7 7.6094 -14.1705 6.5781 24 14 7.7276 -12.1924 8.5130 25 1 6.6356 -12.4480 9.4864 26 1 8.9839 -12.8133 9.0043 27 1 7.9246 -10.7282 8.3635 28 6 4.2678 -6.6924 4.6698 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8901 36 1 1.2536 -2.5434 0.7125 37 1 2.9319 -2.2468 0.1987 38 1 2.8163 -4.5668 1.5649 39 1 4.3866 -4.1283 3.8714 40 1 2.7079 -4.4255 4.3834 41 1 1.6200 -6.5657 3.9652 42 1 1.8735 -6.3800 2.2121 43 1 1.5440 -8.7702 2.8598 44 1 3.1546 -8.4873 2.1548 45 1 2.5057 -8.6189 5.1349 46 1 3.3228 -9.8865 4.1901 47 1 6.0647 -8.1376 5.8363 48 1 4.5226 -8.7115 6.5151 49 1 6.4630 -10.4957 7.0778 50 1 8.0941 -14.7011 7.2297 51 1 5.2355 -6.2258 4.8544 52 1 3.6085 -6.5083 5.5179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690376136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:38 Heat of formation + Delta-G solvation = -148.317625 kcal Electronic energy + Delta-G solvation = -29440.317069 eV Core-core repulsion = 25245.497364 eV Total energy + Delta-G solvation = -4194.819704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08577 -40.62214 -39.48393 -38.87582 -36.46420 -35.84685 -34.12200 -33.73624 -33.64054 -32.36927 -29.44338 -28.92127 -28.05600 -26.44253 -26.22480 -23.93936 -22.81843 -22.23361 -21.66558 -21.22898 -20.62132 -20.15780 -18.23276 -18.06434 -17.73980 -17.09046 -16.85922 -16.65618 -16.54884 -16.30418 -15.92254 -15.54708 -15.51417 -15.25053 -14.97468 -14.88694 -14.58722 -14.46276 -14.35683 -13.93338 -13.78612 -13.65907 -13.52025 -13.28066 -13.10101 -13.05247 -12.88806 -12.85334 -12.64763 -12.40864 -12.34011 -12.03783 -11.97895 -11.63961 -11.61099 -11.58299 -11.33980 -11.24811 -10.88235 -10.63034 -10.31509 -10.20795 -10.10107 -9.17435 -8.40476 -6.00769 1.30659 1.35345 1.44372 1.58274 1.82207 1.97633 2.23290 2.62307 3.03743 3.16034 3.23733 3.69491 3.79786 3.82465 3.91964 4.03191 4.11421 4.14656 4.23327 4.25394 4.30003 4.34074 4.38533 4.40960 4.46097 4.52119 4.56813 4.65840 4.73332 4.76129 4.81282 4.83970 4.92327 4.95252 4.95529 5.05940 5.10406 5.20500 5.30158 5.30686 5.34034 5.40243 5.52593 5.54891 5.92353 6.06996 6.17545 6.26385 6.56437 6.61374 6.90015 7.23543 7.41639 7.99059 8.77177 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032715 B = 0.001571 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.660665 B =17815.779619 C =18280.220496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.395 6.395 5 C 0.044 3.956 6 C 0.508 3.492 7 O -0.577 6.577 8 N -0.711 5.711 9 C 0.135 3.865 10 C -0.084 4.084 11 H 0.086 0.914 12 C -0.107 4.107 13 C -0.108 4.108 14 C 0.050 3.950 15 N -0.533 5.533 16 C 0.054 3.946 17 C 0.452 3.548 18 O -0.603 6.603 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.232 1.232 28 C 0.062 3.938 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.417 0.583 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.119 0.881 48 H 0.075 0.925 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.087 0.913 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 29.178 -10.556 34.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.314 6.314 5 C -0.035 4.035 6 C 0.295 3.705 7 O -0.456 6.456 8 N -0.366 5.366 9 C 0.011 3.989 10 C -0.103 4.103 11 H 0.105 0.895 12 C -0.144 4.144 13 C -0.146 4.146 14 C -0.078 4.078 15 N -0.258 5.258 16 C -0.078 4.078 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.236 5.236 20 C -0.456 4.456 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.155 1.155 28 C -0.066 4.066 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.255 0.745 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.137 0.863 48 H 0.093 0.907 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.710 29.193 -10.782 34.006 hybrid contribution 0.052 -0.913 1.218 1.523 sum -13.658 28.280 -9.564 32.830 Atomic orbital electron populations 1.22309 0.95176 1.02798 1.02915 1.22395 0.94347 0.94088 0.87610 1.21898 1.01577 0.94359 1.03008 1.88036 1.87092 1.18987 1.37315 1.22384 1.03244 0.83405 0.94508 1.20876 0.77126 0.82290 0.90200 1.90720 1.53262 1.61872 1.39751 1.45757 1.67380 1.07752 1.15696 1.21200 0.99529 0.91972 0.86205 1.21273 0.97985 0.92066 0.98946 0.89530 1.21632 0.96031 0.93909 1.02865 1.21488 1.00012 0.96426 0.96662 1.22188 0.88540 0.99190 0.97884 1.61409 1.20850 1.03506 1.40064 1.21809 1.00972 0.91713 0.93267 1.20878 0.81491 0.88987 0.84659 1.90513 1.58212 1.74173 1.25803 1.42054 1.52606 1.12041 1.16864 1.18999 1.35269 0.88362 1.02927 0.92594 1.26070 0.96241 0.95636 1.03286 1.69803 1.40048 1.09819 1.37922 0.85390 0.78917 0.80211 0.77178 1.18273 1.20075 1.15514 1.22100 1.01354 0.86297 0.96861 0.91961 0.93178 0.89715 0.89793 0.92513 0.88939 0.93066 0.87587 0.87430 0.74519 0.91849 0.91876 0.91681 0.89557 0.90709 0.92337 0.94939 0.92628 0.86307 0.90732 0.77611 0.91209 0.89484 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.53 71.98 0.69 -0.81 16 2 C 0.07 0.77 3.34 30.59 0.10 0.87 16 3 C -0.15 -1.54 9.56 71.98 0.69 -0.85 16 4 O -0.39 -7.08 9.52 -129.94 -1.24 -8.32 16 5 C 0.04 0.50 6.23 71.24 0.44 0.95 16 6 C 0.51 9.39 7.91 87.66 0.69 10.08 16 7 O -0.58 -17.14 16.50 16.01 0.26 -16.87 16 8 N -0.71 -9.16 5.31 -463.07 -2.46 -11.62 16 9 C 0.14 2.11 5.07 86.38 0.44 2.55 16 10 C -0.08 -1.35 2.39 -10.74 -0.03 -1.37 16 11 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 12 C -0.11 -1.64 5.13 30.68 0.16 -1.48 16 13 C -0.11 -2.42 6.09 30.65 0.19 -2.23 16 14 C 0.05 1.47 5.11 86.33 0.44 1.91 16 15 N -0.53 -15.44 4.39 -900.93 -3.96 -19.40 16 16 C 0.05 1.65 5.45 85.56 0.47 2.11 16 17 C 0.45 20.32 7.46 87.66 0.65 20.97 16 18 O -0.60 -32.92 13.92 -3.07 -0.04 -32.97 16 19 N -0.59 -27.99 5.09 -306.98 -1.56 -29.56 16 20 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 21 H 0.06 3.90 7.39 -2.91 -0.02 3.87 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.94 -56.45 13.96 21.66 0.30 -56.15 16 24 Si 0.96 38.91 27.74 68.60 1.90 40.81 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.23 -7.90 6.52 99.48 0.65 -7.26 16 28 C 0.06 1.24 4.74 86.32 0.41 1.65 16 29 H 0.06 0.46 7.87 -2.38 -0.02 0.44 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.49 7.79 -2.39 -0.02 0.48 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.11 0.62 7.87 -2.39 -0.02 0.60 16 37 H 0.11 0.62 8.09 -2.39 -0.02 0.60 16 38 H 0.42 2.75 7.67 -92.70 -0.71 2.04 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.90 7.25 -2.38 -0.02 0.88 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 2.19 5.80 -2.39 -0.01 2.17 16 47 H 0.12 3.01 7.98 -2.39 -0.02 2.99 16 48 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 49 H 0.39 15.22 5.76 -92.70 -0.53 14.68 16 50 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 51 H 0.09 1.59 8.01 -2.38 -0.02 1.57 16 52 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -85.80 414.57 -0.52 -86.32 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.39 Total: 31.97 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.66 Total: 15.79 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -7.68 Total: -116.73 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -1.02 Total: -58.16 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Total: -85.80 -0.52 -86.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690376136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.002 kcal (2) G-P(sol) polarization free energy of solvation -85.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds