Wall clock time and date at job start Wed Apr 1 2020 00:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46968 * 2 1 4 4 O 1.42907 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.42892 * 113.99864 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47110 * 179.97438 * 5 4 3 7 7 O 1.21291 * 119.99799 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00316 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.62779 * 354.15287 * 8 6 5 10 10 C 1.53621 * 108.54692 * 126.36819 * 9 8 6 11 11 C 1.53039 * 109.24314 * 54.84812 * 10 9 8 12 12 C 1.53041 * 109.53932 * 298.51726 * 11 10 9 13 13 C 1.46925 * 120.63301 * 174.42248 * 8 6 5 14 14 H 1.09003 * 109.58365 * 113.79992 * 13 8 6 15 15 C 1.53005 * 109.58684 * 353.38018 * 13 8 6 16 16 N 1.46891 * 109.47344 * 181.84931 * 15 13 8 17 17 C 1.46903 * 111.00440 * 184.94463 * 16 15 13 18 18 C 1.50700 * 109.47415 * 180.02562 * 17 16 15 19 19 O 1.21289 * 120.00090 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99821 * 179.97438 * 18 17 16 21 21 C 1.37089 * 119.99964 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00121 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00131 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99776 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00000 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46986 * 90.00433 * 25 23 21 27 27 H 1.48498 * 109.47224 * 210.00580 * 25 23 21 28 28 H 1.48500 * 109.46989 * 330.00642 * 25 23 21 29 29 H 1.09000 * 109.47086 * 300.00751 * 1 2 3 30 30 H 1.09000 * 109.47036 * 60.00430 * 1 2 3 31 31 H 1.08997 * 109.46701 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47374 * 239.99682 * 2 1 3 33 33 H 1.09000 * 109.47036 * 119.99570 * 2 1 3 34 34 H 1.08997 * 109.47332 * 59.99657 * 3 2 1 35 35 H 1.09000 * 109.46891 * 299.99659 * 3 2 1 36 36 H 1.09002 * 109.47173 * 299.99394 * 5 4 3 37 37 H 1.08993 * 109.47869 * 60.00093 * 5 4 3 38 38 H 1.09013 * 109.58283 * 246.19390 * 9 8 6 39 39 H 1.08996 * 109.59171 * 6.61796 * 9 8 6 40 40 H 1.08999 * 109.63114 * 294.86018 * 10 9 8 41 41 H 1.08997 * 109.46100 * 174.73819 * 10 9 8 42 42 H 1.09002 * 109.45793 * 178.49648 * 11 10 9 43 43 H 1.09002 * 109.45864 * 58.53555 * 11 10 9 44 44 H 1.08998 * 109.49570 * 301.40883 * 12 11 10 45 45 H 1.09005 * 109.52317 * 181.33475 * 12 11 10 46 46 H 1.08999 * 109.47219 * 301.85273 * 15 13 8 47 47 H 1.09005 * 109.47048 * 61.84923 * 15 13 8 48 48 H 1.00902 * 111.00153 * 308.89423 * 16 15 13 49 49 H 1.09007 * 109.46349 * 300.00058 * 17 16 15 50 50 H 1.09001 * 109.46989 * 59.99663 * 17 16 15 51 51 H 0.97001 * 119.99719 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99058 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6291 0.0014 7 8 6.0742 1.5341 0.0022 8 7 6.3165 3.7394 0.0007 9 6 5.7047 5.0688 -0.1303 10 6 6.1837 5.9443 1.0377 11 6 7.7138 5.9567 1.0643 12 6 8.2334 4.5341 1.2843 13 6 7.7773 3.6431 0.1248 14 1 8.2455 3.9792 -0.8004 15 6 8.1736 2.1923 0.4061 16 7 9.6304 2.1064 0.5736 17 6 10.0611 0.7105 0.7290 18 6 11.5578 0.6625 0.8987 19 8 12.2023 1.6899 0.8914 20 7 12.1800 -0.5222 1.0595 21 6 13.5414 -0.5659 1.2144 22 1 14.1154 0.3490 1.2079 23 6 14.1831 -1.7873 1.3797 24 7 15.4881 -1.8291 1.5287 25 14 13.1905 -3.3697 1.3917 26 1 13.0814 -3.8960 0.0073 27 1 13.8689 -4.3731 2.2508 28 1 11.8320 -3.0978 1.9263 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7290 3.2883 -0.8904 37 1 3.7283 3.2895 0.8895 38 1 6.0075 5.5188 -1.0759 39 1 4.6191 4.9763 -0.0983 40 1 5.8068 5.5398 1.9771 41 1 5.8138 6.9609 0.9049 42 1 8.0576 6.5984 1.8755 43 1 8.0904 6.3381 0.1152 44 1 7.8373 4.1430 2.2214 45 1 9.3226 4.5467 1.3269 46 1 7.6823 1.8516 1.3175 47 1 7.8662 1.5632 -0.4293 48 1 10.1097 2.5490 -0.1961 49 1 9.5821 0.2783 1.6076 50 1 9.7770 0.1419 -0.1565 51 1 11.6645 -1.3439 1.0657 52 1 15.9358 -2.6818 1.6444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690463444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:20 Heat of formation + Delta-G solvation = -103.891553 kcal Electronic energy + Delta-G solvation = -30193.602546 eV Core-core repulsion = 26000.709301 eV Total energy + Delta-G solvation = -4192.893245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84975 -38.58809 -38.27223 -37.33707 -35.50747 -34.09915 -33.81051 -33.17247 -31.77738 -31.48340 -28.84266 -27.63572 -26.20366 -25.24388 -24.58698 -23.32061 -22.01106 -21.74508 -21.16979 -19.47872 -19.14529 -18.23379 -17.55315 -16.95423 -16.86680 -16.21512 -15.86784 -15.43854 -15.25870 -14.94283 -14.85849 -14.72116 -14.51815 -14.36961 -13.88458 -13.73959 -13.57891 -13.34282 -13.07713 -13.05003 -12.56166 -12.52950 -12.50556 -12.38686 -12.27261 -12.02620 -11.79050 -11.53659 -11.35473 -11.31574 -11.21200 -11.19107 -11.04070 -10.88670 -10.70391 -10.51205 -10.11184 -9.90065 -9.50640 -9.48108 -8.84826 -8.43943 -8.09893 -7.83419 -6.23883 -3.74606 2.31388 2.37560 3.11137 3.14790 3.21721 3.35569 3.85606 4.13097 4.17881 4.32275 4.43278 4.49997 4.53674 4.56530 4.63069 4.68531 4.75382 4.82463 4.86609 4.96833 5.01975 5.02866 5.04121 5.09479 5.20814 5.27592 5.29369 5.32610 5.46598 5.56941 5.63631 5.64987 5.69581 5.79030 5.82206 5.85893 5.89916 5.97990 6.04303 6.06842 6.20186 6.31600 6.47240 6.66705 7.08287 7.28313 7.66909 7.74432 7.98433 8.22847 8.68658 9.03013 9.51240 9.92725 10.89360 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.002386 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.644309 B =11731.071395 C =14345.375970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.045 3.955 6 C 0.513 3.487 7 O -0.506 6.506 8 N -0.609 5.609 9 C 0.107 3.893 10 C -0.136 4.136 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.151 3.849 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.674 5.674 17 C 0.054 3.946 18 C 0.453 3.547 19 O -0.566 6.566 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.884 5.884 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.268 1.268 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.344 0.656 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.371 0.629 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.338 13.175 -4.100 35.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.281 6.281 5 C -0.035 4.035 6 C 0.300 3.700 7 O -0.379 6.379 8 N -0.345 5.345 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.161 4.161 12 C -0.161 4.161 13 C 0.049 3.951 14 H 0.090 0.910 15 C -0.065 4.065 16 N -0.308 5.308 17 C -0.079 4.079 18 C 0.239 3.761 19 O -0.448 6.448 20 N -0.232 5.232 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.524 5.524 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.163 0.837 49 H 0.104 0.896 50 H 0.062 0.938 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -31.352 13.075 -3.397 34.138 hybrid contribution -0.983 -1.291 -0.799 1.809 sum -32.335 11.784 -4.196 34.670 Atomic orbital electron populations 1.21697 0.94646 1.02403 1.01918 1.21456 0.95596 0.95340 1.03832 1.22636 0.80464 0.98397 1.00122 1.88026 1.19558 1.25161 1.95377 1.22262 0.92144 0.86928 1.02135 1.20234 0.88434 0.84439 0.76937 1.90795 1.72951 1.26721 1.47481 1.48127 1.07151 1.05821 1.73427 1.21877 0.97748 0.82709 0.99263 1.22011 0.97219 0.99625 0.98535 1.21572 0.94518 0.97669 1.02307 1.21901 1.02934 0.93419 0.97836 1.21320 0.77854 0.97169 0.98779 0.90984 1.22580 0.87542 0.93577 1.02777 1.60121 1.04855 1.15428 1.50382 1.21611 0.94915 0.90038 1.01322 1.19780 0.88476 0.84232 0.83661 1.90543 1.66801 1.33071 1.54368 1.42217 1.08302 1.06532 1.66189 1.19430 0.80382 0.96651 1.46674 0.86320 1.25036 0.95640 0.97888 0.97706 1.69631 1.07468 1.26474 1.48830 0.86671 0.80080 0.83825 0.78864 1.19685 1.20230 1.19385 0.92537 0.92558 0.91880 0.90903 0.90861 0.93209 0.93238 0.90601 0.90439 0.90866 0.90099 0.91392 0.90772 0.91446 0.91777 0.91583 0.88779 0.90504 0.92033 0.83704 0.89614 0.93767 0.79659 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.86 6.30 -26.73 -0.17 -1.03 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 O -0.36 -3.91 9.88 -55.14 -0.54 -4.45 16 5 C 0.05 0.37 4.77 36.01 0.17 0.54 16 6 C 0.51 5.91 7.61 -10.98 -0.08 5.83 16 7 O -0.51 -8.01 12.06 -14.36 -0.17 -8.18 16 8 N -0.61 -5.83 2.97 -164.96 -0.49 -6.32 16 9 C 0.11 0.62 6.38 -3.49 -0.02 0.60 16 10 C -0.14 -0.78 6.10 -26.39 -0.16 -0.95 16 11 C -0.12 -0.95 5.88 -26.69 -0.16 -1.11 16 12 C -0.12 -1.32 5.11 -26.62 -0.14 -1.46 16 13 C 0.15 1.73 3.09 -67.60 -0.21 1.52 16 14 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 15 C 0.06 0.94 3.59 -3.83 -0.01 0.93 16 16 N -0.67 -11.45 5.47 -115.05 -0.63 -12.08 16 17 C 0.05 1.01 6.16 -4.97 -0.03 0.98 16 18 C 0.45 10.89 7.82 -10.98 -0.09 10.80 16 19 O -0.57 -15.69 15.78 5.55 0.09 -15.60 16 20 N -0.59 -14.91 5.09 -10.96 -0.06 -14.97 16 21 C -0.30 -8.87 10.16 -14.94 -0.15 -9.03 16 22 H 0.12 3.94 7.39 -52.48 -0.39 3.56 16 23 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -26.52 13.96 55.50 0.77 -25.74 16 25 Si 0.88 20.27 27.74 -169.99 -4.71 15.55 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -5.74 6.52 56.52 0.37 -5.37 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.42 7.70 -51.93 -0.40 0.02 16 37 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 38 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.08 0.29 5.93 -51.93 -0.31 -0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.20 7.77 -51.93 -0.40 0.79 16 46 H 0.08 1.26 7.24 -51.93 -0.38 0.88 16 47 H 0.06 1.01 6.22 -51.93 -0.32 0.68 16 48 H 0.34 5.87 8.37 -39.29 -0.33 5.54 16 49 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.37 8.32 5.76 -40.82 -0.24 8.09 16 52 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -36.07 410.88 -9.21 -45.28 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -9.11 Total: 11.36 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.55 Total: 8.96 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.40 Total: -59.11 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.63 Total: -28.23 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.71 Total: 15.55 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.07 -9.21 -45.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690463444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.613 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds