Wall clock time and date at job start Wed Apr 1 2020 00:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 O 1.42906 * 109.46632 * 120.00055 * 2 1 3 5 5 C 1.42900 * 113.99579 * 150.00247 * 4 2 1 6 6 C 1.53004 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47001 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00364 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99856 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.65068 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27531 * 178.90607 * 11 10 8 13 13 C 1.55157 * 103.10033 * 337.71659 * 12 11 10 14 14 H 1.09001 * 111.00741 * 277.51995 * 13 12 11 15 15 N 1.46895 * 111.00422 * 153.66253 * 13 12 11 16 16 C 1.46905 * 111.00187 * 86.45605 * 15 13 12 17 17 C 1.50695 * 109.47469 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99910 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00045 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00254 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99763 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00534 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99503 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47151 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46933 * 120.00267 * 24 22 20 27 27 H 1.48501 * 109.47471 * 239.99700 * 24 22 20 28 28 C 1.47431 * 125.64789 * 179.97438 * 10 8 7 29 29 H 1.08994 * 109.47132 * 300.00233 * 1 2 3 30 30 H 1.09003 * 109.46752 * 59.99791 * 1 2 3 31 31 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47501 * 239.99889 * 2 1 3 33 33 H 1.08998 * 109.47249 * 60.00398 * 3 2 1 34 34 H 1.09004 * 109.46624 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47194 * 299.99561 * 3 2 1 36 36 H 1.09003 * 109.47536 * 59.99708 * 5 4 2 37 37 H 1.09002 * 109.47328 * 299.99785 * 5 4 2 38 38 H 1.09003 * 109.47014 * 59.99677 * 6 5 4 39 39 H 1.08999 * 109.47143 * 299.99631 * 6 5 4 40 40 H 1.09003 * 109.47144 * 60.00192 * 7 6 5 41 41 H 1.08999 * 109.47227 * 300.00016 * 7 6 5 42 42 H 1.09001 * 109.88251 * 59.48348 * 11 10 8 43 43 H 1.09004 * 109.88394 * 298.32261 * 11 10 8 44 44 H 1.09002 * 110.72109 * 96.17040 * 12 11 10 45 45 H 1.09003 * 110.72356 * 219.26865 * 12 11 10 46 46 H 1.00901 * 111.00470 * 210.40701 * 15 13 12 47 47 H 1.09005 * 109.46940 * 300.00457 * 16 15 13 48 48 H 1.08998 * 109.46587 * 59.99710 * 16 15 13 49 49 H 0.97003 * 120.00337 * 0.02562 * 19 17 16 50 50 H 0.97003 * 119.99605 * 180.02562 * 23 22 20 51 51 H 1.08999 * 110.36190 * 322.99854 * 28 10 8 52 52 H 1.08998 * 110.36491 * 85.21533 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2659 -1.3245 0.9887 6 6 3.6759 -2.0082 2.2947 7 6 5.0243 -2.7055 2.1037 8 6 5.4278 -3.3794 3.3899 9 8 4.7076 -3.3093 4.3632 10 7 6.5890 -4.0601 3.4585 11 6 7.5525 -4.2238 2.3602 12 6 8.7357 -5.0494 2.9078 13 6 8.6427 -4.8238 4.4400 14 1 9.1133 -3.8830 4.7257 15 7 9.2336 -5.9501 5.1749 16 6 10.6808 -5.7656 5.3465 17 6 11.2507 -6.9382 6.1023 18 8 10.5229 -7.8393 6.4622 19 7 12.5692 -6.9861 6.3775 20 6 13.0875 -8.0526 7.0655 21 1 12.4393 -8.8546 7.3867 22 6 14.4467 -8.1019 7.3497 23 7 15.2353 -7.1258 6.9593 24 14 15.1528 -9.5547 8.2878 25 1 14.0641 -10.5114 8.6112 26 1 16.1758 -10.2335 7.4522 27 1 15.7802 -9.0744 9.5452 28 6 7.1041 -4.7628 4.6478 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 4.0200 -0.5874 0.7126 37 1 3.1809 -2.0707 0.1987 38 1 2.9220 -2.7452 2.5712 39 1 3.7612 -1.2617 3.0843 40 1 5.7785 -1.9688 1.8270 41 1 4.9387 -3.4520 1.3141 42 1 7.9044 -3.2475 2.0270 43 1 7.0831 -4.7536 1.5312 44 1 8.6143 -6.1052 2.6653 45 1 9.6818 -4.6723 2.5192 46 1 8.7775 -6.0799 6.0656 47 1 11.1570 -5.6981 4.3683 48 1 10.8663 -4.8481 5.9049 49 1 13.1513 -6.2657 6.0894 50 1 16.1843 -7.1603 7.1574 51 1 6.8657 -4.2029 5.5521 52 1 6.6875 -5.7685 4.7042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690689142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:26 Heat of formation + Delta-G solvation = -129.717210 kcal Electronic energy + Delta-G solvation = -28573.081847 eV Core-core repulsion = 24379.068717 eV Total energy + Delta-G solvation = -4194.013130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33874 -38.90513 -38.45560 -37.68968 -34.79344 -34.58208 -33.81352 -32.51548 -31.27691 -30.73814 -29.25165 -27.77811 -27.27097 -25.88098 -23.96755 -23.51836 -22.07703 -21.67287 -20.65474 -19.48374 -19.17706 -17.91457 -17.61233 -17.04715 -16.86916 -16.39827 -16.01687 -15.54072 -15.30142 -15.23017 -15.01237 -14.54982 -14.24210 -13.98416 -13.76858 -13.67094 -13.54527 -13.29903 -13.15978 -12.96263 -12.83282 -12.67937 -12.45119 -12.38658 -12.20764 -11.94770 -11.75618 -11.70531 -11.60204 -11.47683 -11.28424 -11.19032 -11.09347 -11.07976 -10.87105 -10.35628 -10.24506 -10.07217 -9.97689 -9.54281 -8.87464 -8.52161 -8.18257 -7.98772 -6.44132 -3.84908 2.40979 2.61331 3.15048 3.24256 3.26049 3.33351 3.87545 4.03183 4.10533 4.25711 4.38266 4.47507 4.49023 4.52802 4.59360 4.67035 4.73946 4.84424 4.89233 4.97894 5.02021 5.05471 5.09603 5.12243 5.14508 5.20489 5.28990 5.29956 5.33448 5.36278 5.38457 5.60834 5.67836 5.69349 5.71114 5.75639 5.78855 5.80931 5.89305 5.91564 6.00867 6.06323 6.24592 6.84651 7.10967 7.27579 7.53381 7.53729 7.93304 8.03983 8.58423 9.15710 9.51499 10.02646 10.73628 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.001301 C = 0.001285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.205175 B =21516.695782 C =21776.805051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.382 6.382 5 C 0.063 3.937 6 C -0.104 4.104 7 C -0.132 4.132 8 C 0.528 3.472 9 O -0.539 6.539 10 N -0.618 5.618 11 C 0.101 3.899 12 C -0.124 4.124 13 C 0.073 3.927 14 H 0.059 0.941 15 N -0.656 5.656 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.107 3.893 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.354 0.646 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.077 0.923 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.577 16.564 -18.007 31.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.234 4.234 4 O -0.301 6.301 5 C -0.013 4.013 6 C -0.142 4.142 7 C -0.172 4.172 8 C 0.317 3.683 9 O -0.415 6.415 10 N -0.353 5.353 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.039 4.039 14 H 0.076 0.924 15 N -0.289 5.289 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.016 4.016 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.174 0.826 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.360 15.655 -17.592 31.793 hybrid contribution 1.254 0.498 0.567 1.463 sum -20.107 16.153 -17.025 30.904 Atomic orbital electron populations 1.21870 0.93585 1.02791 1.02553 1.22085 0.95081 0.92448 0.88120 1.22309 1.01548 0.96835 1.02659 1.87946 1.36594 1.69990 1.35593 1.22523 0.85691 0.95352 0.97780 1.21228 0.95552 1.00490 0.96944 1.21515 0.98808 1.00837 0.96045 1.20252 0.79534 0.78171 0.90326 1.90736 1.51418 1.60996 1.38387 1.48419 1.20369 1.52644 1.13864 1.22120 0.89844 1.00259 0.90000 1.22723 0.97073 1.01629 0.94848 1.22740 0.93030 0.93241 0.94844 0.92354 1.60069 1.02848 1.39555 1.26450 1.21710 0.88725 0.96927 1.00708 1.19770 0.83320 0.88863 0.85513 1.90534 1.58999 1.39948 1.57167 1.41860 1.06276 1.21908 1.49910 1.19763 0.92163 1.00208 1.30754 0.87837 1.25259 0.96018 0.98512 0.98097 1.69623 1.05581 1.32227 1.46871 0.85803 0.78923 0.80780 0.78867 1.19180 1.20734 1.20760 1.22375 0.92802 0.97864 0.88588 0.91706 0.91285 0.91947 0.92298 0.91686 0.92492 0.91663 0.93349 0.93289 0.90217 0.90247 0.88731 0.88686 0.91335 0.91094 0.89052 0.90052 0.82587 0.89494 0.93688 0.77469 0.91916 0.90407 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.56 37.16 0.36 -0.46 16 2 C 0.08 0.50 3.34 -26.73 -0.09 0.41 16 3 C -0.18 -0.94 9.53 37.16 0.35 -0.59 16 4 O -0.38 -3.36 9.99 -35.23 -0.35 -3.72 16 5 C 0.06 0.43 5.75 37.16 0.21 0.65 16 6 C -0.10 -0.87 4.87 -26.73 -0.13 -1.00 16 7 C -0.13 -0.94 4.89 -27.88 -0.14 -1.07 16 8 C 0.53 5.94 7.85 -10.98 -0.09 5.86 16 9 O -0.54 -8.29 16.24 5.56 0.09 -8.20 16 10 N -0.62 -6.41 3.33 -170.22 -0.57 -6.98 16 11 C 0.10 0.76 6.49 -3.07 -0.02 0.74 16 12 C -0.12 -1.17 6.59 -24.90 -0.16 -1.33 16 13 C 0.07 0.83 3.34 -65.31 -0.22 0.62 16 14 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 15 N -0.66 -9.91 6.00 -105.46 -0.63 -10.55 16 16 C 0.05 0.86 6.04 -4.98 -0.03 0.83 16 17 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 18 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 19 N -0.56 -13.99 5.29 -10.97 -0.06 -14.05 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.11 1.25 6.41 -2.27 -0.01 1.23 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.05 0.27 7.87 -51.93 -0.41 -0.14 16 37 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 38 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.35 5.63 8.24 -39.29 -0.32 5.30 16 47 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 49 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 52 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 427.51 15.07 6.44 6.44 Total: -1.00 -33.78 427.51 -8.96 -42.75 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -9.38 Total: 9.41 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -0.29 Total: 8.03 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.53 Total: -55.08 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.17 Total: -27.39 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -33.78 -8.96 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690689142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.969 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds