Wall clock time and date at job start Wed Apr 1 2020 00:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 O 1.42906 * 109.46632 * 120.00055 * 2 1 3 5 5 C 1.42900 * 113.99579 * 150.00247 * 4 2 1 6 6 C 1.53004 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47001 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00364 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99856 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.65068 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27531 * 178.90607 * 11 10 8 13 13 C 1.55157 * 103.10033 * 337.71659 * 12 11 10 14 14 H 1.09001 * 111.00741 * 277.51995 * 13 12 11 15 15 N 1.46895 * 111.00422 * 153.66253 * 13 12 11 16 16 C 1.46905 * 111.00187 * 86.45605 * 15 13 12 17 17 C 1.50695 * 109.47469 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99910 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00045 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00254 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99763 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00534 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99503 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47151 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46933 * 120.00267 * 24 22 20 27 27 H 1.48501 * 109.47471 * 239.99700 * 24 22 20 28 28 C 1.47431 * 125.64789 * 179.97438 * 10 8 7 29 29 H 1.08994 * 109.47132 * 300.00233 * 1 2 3 30 30 H 1.09003 * 109.46752 * 59.99791 * 1 2 3 31 31 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47501 * 239.99889 * 2 1 3 33 33 H 1.08998 * 109.47249 * 60.00398 * 3 2 1 34 34 H 1.09004 * 109.46624 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47194 * 299.99561 * 3 2 1 36 36 H 1.09003 * 109.47536 * 59.99708 * 5 4 2 37 37 H 1.09002 * 109.47328 * 299.99785 * 5 4 2 38 38 H 1.09003 * 109.47014 * 59.99677 * 6 5 4 39 39 H 1.08999 * 109.47143 * 299.99631 * 6 5 4 40 40 H 1.09003 * 109.47144 * 60.00192 * 7 6 5 41 41 H 1.08999 * 109.47227 * 300.00016 * 7 6 5 42 42 H 1.09001 * 109.88251 * 59.48348 * 11 10 8 43 43 H 1.09004 * 109.88394 * 298.32261 * 11 10 8 44 44 H 1.09002 * 110.72109 * 96.17040 * 12 11 10 45 45 H 1.09003 * 110.72356 * 219.26865 * 12 11 10 46 46 H 1.00901 * 111.00470 * 210.40701 * 15 13 12 47 47 H 1.09005 * 109.46940 * 300.00457 * 16 15 13 48 48 H 1.08998 * 109.46587 * 59.99710 * 16 15 13 49 49 H 0.97003 * 120.00337 * 0.02562 * 19 17 16 50 50 H 0.97003 * 119.99605 * 180.02562 * 23 22 20 51 51 H 1.08999 * 110.36190 * 322.99854 * 28 10 8 52 52 H 1.08998 * 110.36491 * 85.21533 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2659 -1.3245 0.9887 6 6 3.6759 -2.0082 2.2947 7 6 5.0243 -2.7055 2.1037 8 6 5.4278 -3.3794 3.3899 9 8 4.7076 -3.3093 4.3632 10 7 6.5890 -4.0601 3.4585 11 6 7.5525 -4.2238 2.3602 12 6 8.7357 -5.0494 2.9078 13 6 8.6427 -4.8238 4.4400 14 1 9.1133 -3.8830 4.7257 15 7 9.2336 -5.9501 5.1749 16 6 10.6808 -5.7656 5.3465 17 6 11.2507 -6.9382 6.1023 18 8 10.5229 -7.8393 6.4622 19 7 12.5692 -6.9861 6.3775 20 6 13.0875 -8.0526 7.0655 21 1 12.4393 -8.8546 7.3867 22 6 14.4467 -8.1019 7.3497 23 7 15.2353 -7.1258 6.9593 24 14 15.1528 -9.5547 8.2878 25 1 14.0641 -10.5114 8.6112 26 1 16.1758 -10.2335 7.4522 27 1 15.7802 -9.0744 9.5452 28 6 7.1041 -4.7628 4.6478 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 4.0200 -0.5874 0.7126 37 1 3.1809 -2.0707 0.1987 38 1 2.9220 -2.7452 2.5712 39 1 3.7612 -1.2617 3.0843 40 1 5.7785 -1.9688 1.8270 41 1 4.9387 -3.4520 1.3141 42 1 7.9044 -3.2475 2.0270 43 1 7.0831 -4.7536 1.5312 44 1 8.6143 -6.1052 2.6653 45 1 9.6818 -4.6723 2.5192 46 1 8.7775 -6.0799 6.0656 47 1 11.1570 -5.6981 4.3683 48 1 10.8663 -4.8481 5.9049 49 1 13.1513 -6.2657 6.0894 50 1 16.1843 -7.1603 7.1574 51 1 6.8657 -4.2029 5.5521 52 1 6.6875 -5.7685 4.7042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690689142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:25 Heat of formation + Delta-G solvation = -154.561769 kcal Electronic energy + Delta-G solvation = -28574.159188 eV Core-core repulsion = 24379.068717 eV Total energy + Delta-G solvation = -4195.090471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19730 -40.16206 -39.41219 -38.77519 -36.20930 -35.55794 -35.16767 -33.27348 -33.05733 -31.68013 -30.15513 -28.40909 -28.05942 -27.19362 -25.54417 -24.31726 -22.67509 -22.15898 -21.56988 -21.10738 -20.14017 -19.87355 -18.35050 -17.95643 -17.61141 -17.45681 -17.04186 -16.83329 -16.35455 -16.22640 -16.01573 -15.71857 -15.64832 -15.20873 -14.80273 -14.63437 -14.44076 -14.18801 -14.02213 -13.77330 -13.66405 -13.59441 -13.47833 -13.25718 -13.13331 -12.99069 -12.84994 -12.77346 -12.47279 -12.40562 -12.39029 -12.17099 -12.12845 -12.09690 -11.83762 -11.70369 -11.54653 -11.50996 -10.98713 -10.47359 -10.35165 -10.00863 -9.70746 -9.42257 -8.46701 -5.95063 1.36849 1.42676 1.56392 1.58047 1.82760 2.05726 2.29854 2.73031 2.93141 3.20980 3.32252 3.52360 3.69551 3.75454 3.95637 3.97237 4.09720 4.13761 4.16256 4.27473 4.30361 4.33866 4.35500 4.39368 4.49614 4.51863 4.52813 4.58174 4.63133 4.71077 4.75268 4.80428 4.86910 4.88507 4.93068 4.95502 5.07302 5.11428 5.17885 5.26649 5.29683 5.32039 5.34151 5.41919 5.87833 6.08801 6.28909 6.37961 6.49101 6.60565 7.09919 7.13389 7.56801 8.12336 8.70828 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.001301 C = 0.001285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.205175 B =21516.695782 C =21776.805051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.174 4.174 4 O -0.412 6.412 5 C 0.065 3.935 6 C -0.101 4.101 7 C -0.119 4.119 8 C 0.520 3.480 9 O -0.593 6.593 10 N -0.617 5.617 11 C 0.102 3.898 12 C -0.121 4.121 13 C 0.076 3.924 14 H 0.070 0.930 15 N -0.669 5.669 16 C 0.069 3.931 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.107 3.893 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.345 0.655 47 H 0.111 0.889 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.062 0.938 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 17.819 -20.720 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.231 4.231 4 O -0.333 6.333 5 C -0.011 4.011 6 C -0.139 4.139 7 C -0.159 4.159 8 C 0.311 3.689 9 O -0.474 6.474 10 N -0.351 5.351 11 C -0.020 4.020 12 C -0.159 4.159 13 C -0.034 4.034 14 H 0.088 0.912 15 N -0.302 5.302 16 C -0.064 4.064 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.016 4.016 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.118 0.882 46 H 0.164 0.836 47 H 0.129 0.871 48 H 0.085 0.915 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.081 0.919 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.399 16.940 -20.357 33.429 hybrid contribution 0.904 0.112 1.414 1.682 sum -19.495 17.052 -18.943 32.088 Atomic orbital electron populations 1.21900 0.93397 1.02578 1.02967 1.22282 0.95382 0.92857 0.87865 1.22296 1.01651 0.96340 1.02846 1.87918 1.37560 1.70540 1.37237 1.22562 0.85528 0.96052 0.96981 1.21151 0.95939 0.99457 0.97358 1.21526 0.98473 1.01718 0.94140 1.21082 0.78998 0.77706 0.91134 1.90714 1.53073 1.62998 1.40581 1.48530 1.20647 1.51843 1.14086 1.22342 0.88495 1.01889 0.89269 1.22732 0.98964 1.01374 0.92869 1.22774 0.92253 0.92387 0.95986 0.91177 1.60092 1.02061 1.41782 1.26272 1.21559 0.89444 0.94349 1.01017 1.20895 0.82435 0.89860 0.84399 1.90504 1.59845 1.42142 1.58627 1.41912 1.07164 1.21578 1.50245 1.19694 0.92748 1.01043 1.32890 0.90456 1.25989 0.95737 1.00904 0.98383 1.69672 1.06029 1.33249 1.47054 0.84904 0.77988 0.77646 0.78009 1.19907 1.19539 1.19663 1.22208 0.93290 0.97036 0.89107 0.92811 0.89356 0.92469 0.90786 0.92932 0.92286 0.90040 0.91621 0.91491 0.92670 0.92624 0.85672 0.85840 0.88286 0.88835 0.90491 0.88151 0.83614 0.87077 0.91466 0.76880 0.91297 0.91938 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.56 71.98 0.69 -0.82 16 2 C 0.07 0.81 3.34 30.60 0.10 0.91 16 3 C -0.17 -1.60 9.53 71.98 0.69 -0.92 16 4 O -0.41 -6.98 9.99 -148.98 -1.49 -8.47 16 5 C 0.06 0.76 5.75 71.98 0.41 1.18 16 6 C -0.10 -1.62 4.87 30.60 0.15 -1.47 16 7 C -0.12 -1.37 4.89 29.85 0.15 -1.23 16 8 C 0.52 11.22 7.85 87.66 0.69 11.91 16 9 O -0.59 -18.97 16.24 -3.04 -0.05 -19.02 16 10 N -0.62 -11.78 3.33 -810.83 -2.70 -14.48 16 11 C 0.10 1.15 6.49 86.73 0.56 1.71 16 12 C -0.12 -1.91 6.59 31.78 0.21 -1.70 16 13 C 0.08 1.63 3.34 46.47 0.16 1.79 16 14 H 0.07 1.38 7.92 -2.39 -0.02 1.36 16 15 N -0.67 -19.84 6.00 -487.55 -2.93 -22.76 16 16 C 0.07 2.19 6.04 85.55 0.52 2.70 16 17 C 0.44 20.25 7.82 87.66 0.69 20.94 16 18 O -0.62 -34.33 15.78 -3.06 -0.05 -34.38 16 19 N -0.57 -28.72 5.29 -306.99 -1.62 -30.34 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 23 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 24 Si 0.99 42.61 29.55 68.60 2.03 44.63 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 C 0.11 2.51 6.41 87.02 0.56 3.07 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.58 7.79 -2.39 -0.02 0.56 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.51 7.87 -2.38 -0.02 0.49 16 35 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 37 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 38 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.34 11.20 8.24 -89.69 -0.74 10.46 16 47 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 48 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 49 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 50 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 51 H 0.06 1.63 8.04 -2.39 -0.02 1.61 16 52 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -77.04 427.51 -0.25 -77.28 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.57 Total: 36.08 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.84 Total: 19.98 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.97 Total: -116.12 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -1.59 Total: -61.86 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -77.04 -0.25 -77.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690689142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.277 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds