Wall clock time and date at job start Wed Apr 1 2020 00:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.42127 * 2 1 4 4 C 1.54477 * 110.37108 * 237.68707 * 2 1 3 5 5 C 1.54506 * 104.06393 * 217.19257 * 4 2 1 6 6 C 1.54481 * 104.06328 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.37261 * 265.14954 * 6 5 4 8 8 C 1.53005 * 110.46871 * 142.85832 * 6 5 4 9 9 C 1.52992 * 109.47292 * 176.61332 * 8 6 5 10 10 C 1.50702 * 109.47333 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99779 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00060 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00123 * 0.02562 * 12 10 9 14 14 C 1.46501 * 119.99990 * 179.97438 * 12 10 9 15 15 C 1.53004 * 109.46712 * 90.00381 * 14 12 10 16 16 N 1.46905 * 109.47121 * 180.02562 * 15 14 12 17 17 C 1.46893 * 111.00099 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47311 * 180.02562 * 17 16 15 19 19 O 1.21295 * 119.99938 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00480 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00224 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99996 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99953 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00012 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00137 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46886 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47285 * 120.00040 * 25 23 21 28 28 H 1.48503 * 109.47144 * 240.00300 * 25 23 21 29 29 O 1.44423 * 110.36994 * 122.31047 * 2 1 3 30 30 H 1.09003 * 109.46859 * 299.14860 * 1 2 3 31 31 H 1.08999 * 109.47295 * 59.14278 * 1 2 3 32 32 H 1.09001 * 109.47184 * 179.14852 * 1 2 3 33 33 H 1.09006 * 110.51456 * 335.83561 * 4 2 1 34 34 H 1.08992 * 110.51333 * 98.54707 * 4 2 1 35 35 H 1.08996 * 110.51191 * 241.35340 * 5 4 2 36 36 H 1.09006 * 110.51322 * 118.64397 * 5 4 2 37 37 H 1.09005 * 109.46606 * 296.61705 * 8 6 5 38 38 H 1.09004 * 109.46778 * 56.60918 * 8 6 5 39 39 H 1.09005 * 109.47130 * 300.00013 * 9 8 6 40 40 H 1.09004 * 109.47098 * 59.99769 * 9 8 6 41 41 H 1.09005 * 109.46953 * 89.99955 * 13 12 10 42 42 H 1.08998 * 109.47167 * 209.99756 * 13 12 10 43 43 H 1.08996 * 109.47023 * 330.00080 * 13 12 10 44 44 H 1.08996 * 109.47380 * 210.00251 * 14 12 10 45 45 H 1.08995 * 109.46949 * 330.00829 * 14 12 10 46 46 H 1.08996 * 109.47092 * 300.00046 * 15 14 12 47 47 H 1.09005 * 109.47219 * 60.00383 * 15 14 12 48 48 H 1.00897 * 110.99856 * 56.04284 * 16 15 14 49 49 H 1.09008 * 109.47062 * 299.99939 * 17 16 15 50 50 H 1.08994 * 109.47503 * 59.99668 * 17 16 15 51 51 H 0.97009 * 119.99693 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99549 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7741 -1.2239 5 6 3.3177 -1.5058 -0.6858 6 6 3.3877 -1.0867 0.7994 7 1 4.0530 -0.2319 0.9215 8 6 3.8614 -2.2569 1.6638 9 6 4.0034 -1.7942 3.1151 10 6 4.4693 -2.9469 3.9667 11 8 4.6678 -4.0319 3.4624 12 7 4.6655 -2.7722 5.2885 13 6 4.4251 -1.4617 5.8978 14 6 5.1179 -3.8930 6.1164 15 6 6.6474 -3.9154 6.1525 16 7 7.1012 -5.0397 6.9821 17 6 8.5680 -5.0925 7.0404 18 6 8.9951 -6.2559 7.8976 19 8 8.1597 -6.9711 8.4093 20 7 10.3054 -6.5024 8.0949 21 6 10.6939 -7.5606 8.8753 22 1 9.9500 -8.1969 9.3316 23 6 12.0448 -7.8144 9.0791 24 7 12.9499 -7.0398 8.5243 25 14 12.5742 -9.2566 10.1417 26 1 11.3719 -9.9679 10.6454 27 1 13.3989 -10.1904 9.3336 28 1 13.3727 -8.7583 11.2904 29 8 2.0327 -0.7237 1.1443 30 1 -0.3633 0.5006 0.8976 31 1 -0.3634 0.5271 -0.8822 32 1 -0.3633 -1.0276 -0.0153 33 1 1.3275 -1.4921 -1.5772 34 1 2.3429 -0.0841 -2.0215 35 1 4.2108 -1.1775 -1.2174 36 1 3.1954 -2.5854 -0.7730 37 1 3.1333 -3.0663 1.6100 38 1 4.8257 -2.6108 1.2992 39 1 4.7314 -0.9847 3.1689 40 1 3.0390 -1.4402 3.4796 41 1 3.3884 -1.3995 6.2286 42 1 5.0879 -1.3317 6.7533 43 1 4.6202 -0.6790 5.1648 44 1 4.7323 -3.7756 7.1291 45 1 4.7507 -4.8282 5.6939 46 1 7.0330 -4.0328 5.1398 47 1 7.0146 -2.9801 6.5750 48 1 6.7206 -5.9123 6.6480 49 1 8.9674 -5.2174 6.0338 50 1 8.9482 -4.1656 7.4696 51 1 10.9735 -5.9307 7.6854 52 1 13.8929 -7.2169 8.6669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691614864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:32 Heat of formation + Delta-G solvation = -129.104152 kcal Electronic energy + Delta-G solvation = -28879.847095 eV Core-core repulsion = 24685.860549 eV Total energy + Delta-G solvation = -4193.986546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35864 -39.77894 -38.25386 -36.42115 -34.94165 -34.30456 -33.77694 -32.66021 -31.33356 -31.15632 -29.74177 -27.19588 -26.97330 -25.63505 -24.10544 -23.20609 -22.08726 -21.58836 -21.20556 -19.42928 -19.03558 -17.86067 -17.31689 -17.00401 -16.61404 -16.27009 -16.14759 -15.60225 -15.54357 -15.24445 -14.56794 -14.31658 -14.18640 -14.09127 -13.82325 -13.66013 -13.55235 -13.25101 -13.08923 -13.07899 -12.80593 -12.65981 -12.60984 -12.20184 -12.11360 -12.00799 -11.90025 -11.52423 -11.47549 -11.45804 -11.28857 -11.17614 -11.08951 -11.04703 -10.94005 -10.32059 -10.20030 -10.14946 -9.93285 -9.49399 -8.90273 -8.42193 -8.04528 -7.93139 -6.39236 -3.79879 2.47306 2.76056 3.18484 3.28817 3.36514 3.36964 3.93985 4.06013 4.15853 4.17475 4.33809 4.45119 4.47437 4.48370 4.68218 4.77807 4.82374 4.91213 4.94913 5.00348 5.06244 5.07803 5.11875 5.18216 5.23385 5.27476 5.31618 5.33907 5.36501 5.40575 5.45312 5.55061 5.56869 5.61429 5.67721 5.74398 5.79178 5.88894 5.91584 5.95025 6.02393 6.25683 6.34843 6.49563 7.17609 7.21762 7.58016 7.67577 8.01273 8.09343 8.64140 9.20641 9.57164 10.08717 10.78680 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.001406 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.886244 B =19912.759779 C =20370.317650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.069 0.931 8 C -0.098 4.098 9 C -0.136 4.136 10 C 0.511 3.489 11 O -0.538 6.538 12 N -0.617 5.617 13 C 0.077 3.923 14 C 0.116 3.884 15 C 0.047 3.953 16 N -0.667 5.667 17 C 0.053 3.947 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 O -0.368 6.368 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.351 0.649 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.853 20.589 -18.572 34.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.087 0.913 8 C -0.135 4.135 9 C -0.176 4.176 10 C 0.299 3.701 11 O -0.415 6.415 12 N -0.351 5.351 13 C -0.066 4.066 14 C -0.007 4.007 15 C -0.084 4.084 16 N -0.300 5.300 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 O -0.287 6.287 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.170 0.830 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.281 19.804 -17.683 34.026 hybrid contribution 1.254 -0.386 -0.735 1.504 sum -20.027 19.418 -18.418 33.427 Atomic orbital electron populations 1.21805 0.93226 1.02973 1.02421 1.22958 0.95330 0.95333 0.85233 0.91498 1.23008 0.97858 0.99804 0.98297 1.22980 0.98445 1.01912 0.95652 1.23041 0.84678 0.96945 0.93618 0.91281 1.21425 1.02822 0.96839 0.92458 1.21668 1.03418 0.97032 0.95468 1.20786 0.77062 0.90167 0.82079 1.90718 1.51242 1.27257 1.72244 1.47867 1.67199 1.11958 1.08065 1.21844 1.01675 0.83795 0.99325 1.21412 0.94116 0.89888 0.95255 1.22250 0.95049 0.95631 0.95456 1.60012 1.08120 1.07083 1.54780 1.21650 0.88366 0.99401 0.98596 1.19803 0.83465 0.87693 0.86339 1.90523 1.51373 1.51113 1.53643 1.41866 1.05120 1.28155 1.44966 1.19769 0.91958 1.05974 1.25093 0.87843 1.25263 0.95481 0.98975 0.98262 1.69627 1.01468 1.38761 1.44535 0.85796 0.78721 0.80566 0.79239 1.19195 1.20793 1.20759 1.89162 1.26982 1.74450 1.38140 0.91818 0.91249 0.91753 0.90534 0.90663 0.90456 0.90251 0.90191 0.89759 0.89039 0.88275 0.92343 0.90575 0.90993 0.89391 0.89777 0.95195 0.91205 0.82960 0.93853 0.89648 0.77467 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.52 37.16 0.35 -0.39 16 2 C 0.07 0.42 3.92 -25.96 -0.10 0.32 16 3 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 4 C -0.15 -0.79 6.63 -25.17 -0.17 -0.96 16 5 C -0.15 -0.90 6.63 -25.16 -0.17 -1.07 16 6 C 0.07 0.52 3.26 -25.95 -0.08 0.43 16 7 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 8 C -0.10 -0.81 4.14 -26.73 -0.11 -0.92 16 9 C -0.14 -1.08 4.18 -27.89 -0.12 -1.20 16 10 C 0.51 5.87 7.67 -10.99 -0.08 5.79 16 11 O -0.54 -8.38 15.56 5.56 0.09 -8.29 16 12 N -0.62 -6.30 2.87 -181.57 -0.52 -6.82 16 13 C 0.08 0.49 10.24 59.85 0.61 1.11 16 14 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 15 C 0.05 0.64 6.01 -3.82 -0.02 0.62 16 16 N -0.67 -11.43 6.13 -115.06 -0.70 -12.13 16 17 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 18 C 0.44 10.78 7.82 -10.99 -0.09 10.69 16 19 O -0.58 -16.26 15.78 5.54 0.09 -16.18 16 20 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 21 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 22 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 25 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 O -0.37 -3.06 10.75 -35.23 -0.38 -3.44 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.08 0.39 7.86 -51.93 -0.41 -0.01 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 37 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.09 0.55 7.40 -51.93 -0.38 0.16 16 40 H 0.10 0.73 7.92 -51.93 -0.41 0.32 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 43 H 0.07 0.34 6.44 -51.93 -0.33 0.00 16 44 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 45 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.35 6.33 8.43 -39.29 -0.33 5.99 16 49 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 50 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 51 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 424.09 15.07 6.39 6.39 Total: -1.00 -34.63 424.09 -8.91 -43.54 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -9.25 Total: 10.92 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.27 Total: 8.60 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.56 Total: -57.88 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.20 Total: -27.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.63 -8.91 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691614864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.564 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds