Wall clock time and date at job start Wed Apr 1 2020 00:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.42127 * 2 1 4 4 C 1.54477 * 110.37108 * 237.68707 * 2 1 3 5 5 C 1.54506 * 104.06393 * 217.19257 * 4 2 1 6 6 C 1.54481 * 104.06328 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.37261 * 265.14954 * 6 5 4 8 8 C 1.53005 * 110.46871 * 142.85832 * 6 5 4 9 9 C 1.52992 * 109.47292 * 176.61332 * 8 6 5 10 10 C 1.50702 * 109.47333 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99779 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00060 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00123 * 0.02562 * 12 10 9 14 14 C 1.46501 * 119.99990 * 179.97438 * 12 10 9 15 15 C 1.53004 * 109.46712 * 90.00381 * 14 12 10 16 16 N 1.46905 * 109.47121 * 180.02562 * 15 14 12 17 17 C 1.46893 * 111.00099 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47311 * 180.02562 * 17 16 15 19 19 O 1.21295 * 119.99938 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00480 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00224 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99996 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99953 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00012 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00137 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46886 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47285 * 120.00040 * 25 23 21 28 28 H 1.48503 * 109.47144 * 240.00300 * 25 23 21 29 29 O 1.44423 * 110.36994 * 122.31047 * 2 1 3 30 30 H 1.09003 * 109.46859 * 299.14860 * 1 2 3 31 31 H 1.08999 * 109.47295 * 59.14278 * 1 2 3 32 32 H 1.09001 * 109.47184 * 179.14852 * 1 2 3 33 33 H 1.09006 * 110.51456 * 335.83561 * 4 2 1 34 34 H 1.08992 * 110.51333 * 98.54707 * 4 2 1 35 35 H 1.08996 * 110.51191 * 241.35340 * 5 4 2 36 36 H 1.09006 * 110.51322 * 118.64397 * 5 4 2 37 37 H 1.09005 * 109.46606 * 296.61705 * 8 6 5 38 38 H 1.09004 * 109.46778 * 56.60918 * 8 6 5 39 39 H 1.09005 * 109.47130 * 300.00013 * 9 8 6 40 40 H 1.09004 * 109.47098 * 59.99769 * 9 8 6 41 41 H 1.09005 * 109.46953 * 89.99955 * 13 12 10 42 42 H 1.08998 * 109.47167 * 209.99756 * 13 12 10 43 43 H 1.08996 * 109.47023 * 330.00080 * 13 12 10 44 44 H 1.08996 * 109.47380 * 210.00251 * 14 12 10 45 45 H 1.08995 * 109.46949 * 330.00829 * 14 12 10 46 46 H 1.08996 * 109.47092 * 300.00046 * 15 14 12 47 47 H 1.09005 * 109.47219 * 60.00383 * 15 14 12 48 48 H 1.00897 * 110.99856 * 56.04284 * 16 15 14 49 49 H 1.09008 * 109.47062 * 299.99939 * 17 16 15 50 50 H 1.08994 * 109.47503 * 59.99668 * 17 16 15 51 51 H 0.97009 * 119.99693 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99549 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7741 -1.2239 5 6 3.3177 -1.5058 -0.6858 6 6 3.3877 -1.0867 0.7994 7 1 4.0530 -0.2319 0.9215 8 6 3.8614 -2.2569 1.6638 9 6 4.0034 -1.7942 3.1151 10 6 4.4693 -2.9469 3.9667 11 8 4.6678 -4.0319 3.4624 12 7 4.6655 -2.7722 5.2885 13 6 4.4251 -1.4617 5.8978 14 6 5.1179 -3.8930 6.1164 15 6 6.6474 -3.9154 6.1525 16 7 7.1012 -5.0397 6.9821 17 6 8.5680 -5.0925 7.0404 18 6 8.9951 -6.2559 7.8976 19 8 8.1597 -6.9711 8.4093 20 7 10.3054 -6.5024 8.0949 21 6 10.6939 -7.5606 8.8753 22 1 9.9500 -8.1969 9.3316 23 6 12.0448 -7.8144 9.0791 24 7 12.9499 -7.0398 8.5243 25 14 12.5742 -9.2566 10.1417 26 1 11.3719 -9.9679 10.6454 27 1 13.3989 -10.1904 9.3336 28 1 13.3727 -8.7583 11.2904 29 8 2.0327 -0.7237 1.1443 30 1 -0.3633 0.5006 0.8976 31 1 -0.3634 0.5271 -0.8822 32 1 -0.3633 -1.0276 -0.0153 33 1 1.3275 -1.4921 -1.5772 34 1 2.3429 -0.0841 -2.0215 35 1 4.2108 -1.1775 -1.2174 36 1 3.1954 -2.5854 -0.7730 37 1 3.1333 -3.0663 1.6100 38 1 4.8257 -2.6108 1.2992 39 1 4.7314 -0.9847 3.1689 40 1 3.0390 -1.4402 3.4796 41 1 3.3884 -1.3995 6.2286 42 1 5.0879 -1.3317 6.7533 43 1 4.6202 -0.6790 5.1648 44 1 4.7323 -3.7756 7.1291 45 1 4.7507 -4.8282 5.6939 46 1 7.0330 -4.0328 5.1398 47 1 7.0146 -2.9801 6.5750 48 1 6.7206 -5.9123 6.6480 49 1 8.9674 -5.2174 6.0338 50 1 8.9482 -4.1656 7.4696 51 1 10.9735 -5.9307 7.6854 52 1 13.8929 -7.2169 8.6669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691614864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:31 Heat of formation + Delta-G solvation = -154.317210 kcal Electronic energy + Delta-G solvation = -28880.940415 eV Core-core repulsion = 24685.860549 eV Total energy + Delta-G solvation = -4195.079866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13536 -40.40325 -40.15622 -37.56385 -36.24270 -35.71778 -34.92856 -33.29559 -33.14369 -31.93178 -30.77185 -28.20770 -27.78949 -26.86494 -25.57148 -24.04799 -23.00382 -22.17247 -21.71163 -21.15925 -20.09667 -19.86217 -18.15566 -17.91433 -17.56946 -17.16331 -17.05682 -17.01452 -16.50544 -16.37102 -15.91583 -15.85556 -15.35041 -15.07222 -14.99305 -14.66629 -14.45424 -14.15706 -14.03370 -13.86579 -13.74699 -13.54664 -13.41327 -13.34163 -13.15039 -13.04802 -12.91125 -12.75811 -12.57100 -12.51049 -12.41794 -12.12313 -12.11533 -12.05628 -11.77824 -11.64645 -11.53040 -11.49928 -10.85289 -10.64903 -10.41146 -10.03497 -9.72425 -9.45322 -8.48193 -5.97238 1.36066 1.41490 1.55984 1.60178 1.93269 2.01970 2.29232 2.89284 2.95751 3.18695 3.44129 3.56691 3.70609 3.77421 3.95532 3.99628 4.03457 4.09295 4.13122 4.26755 4.32396 4.33872 4.41314 4.45010 4.47519 4.50661 4.55096 4.56923 4.66055 4.67031 4.73938 4.80509 4.83244 4.93086 4.96262 4.97441 5.00346 5.10011 5.17016 5.20384 5.26067 5.31689 5.39795 5.46141 5.81994 6.02135 6.04330 6.25410 6.38133 6.57828 7.10634 7.15453 7.53242 8.08479 8.69488 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.001406 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.886244 B =19912.759779 C =20370.317650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.077 3.923 7 H 0.087 0.913 8 C -0.095 4.095 9 C -0.125 4.125 10 C 0.503 3.497 11 O -0.589 6.589 12 N -0.614 5.614 13 C 0.070 3.930 14 C 0.121 3.879 15 C 0.057 3.943 16 N -0.676 5.676 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.571 5.571 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.269 1.269 29 O -0.390 6.390 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.019 0.981 47 H 0.089 0.911 48 H 0.342 0.658 49 H 0.060 0.940 50 H 0.109 0.891 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.603 23.016 -18.929 36.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.193 4.193 6 C 0.020 3.980 7 H 0.105 0.895 8 C -0.133 4.133 9 C -0.164 4.164 10 C 0.293 3.707 11 O -0.470 6.470 12 N -0.347 5.347 13 C -0.072 4.072 14 C -0.003 4.003 15 C -0.073 4.073 16 N -0.309 5.309 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.194 1.194 29 O -0.310 6.310 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.107 0.893 48 H 0.161 0.839 49 H 0.078 0.922 50 H 0.127 0.873 51 H 0.231 0.769 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.029 22.299 -18.041 35.566 hybrid contribution 1.132 -1.106 -0.633 1.704 sum -19.898 21.193 -18.674 34.551 Atomic orbital electron populations 1.21822 0.92837 1.02522 1.03156 1.23151 0.95766 0.95764 0.84797 0.90275 1.23014 0.97306 0.99915 0.98477 1.23010 0.99531 1.01321 0.95429 1.23058 0.84575 0.96747 0.93623 0.89492 1.21355 1.01721 0.96868 0.93362 1.21667 1.04478 0.96095 0.94188 1.21481 0.76269 0.90390 0.82586 1.90696 1.53577 1.29394 1.73285 1.47978 1.66213 1.12826 1.07663 1.22135 1.02732 0.82158 1.00154 1.21234 0.93145 0.89963 0.95930 1.22246 0.95889 0.94877 0.94299 1.60041 1.07136 1.07718 1.55970 1.21522 0.89448 0.97454 0.98149 1.20811 0.82521 0.88422 0.85803 1.90491 1.52261 1.52912 1.55254 1.41922 1.05935 1.27939 1.45069 1.19730 0.92315 1.07380 1.27088 0.90303 1.26056 0.94898 1.01280 0.98939 1.69682 1.01961 1.39675 1.44763 0.84853 0.78077 0.77410 0.77875 1.19805 1.19598 1.19420 1.89135 1.27616 1.74928 1.39351 0.92100 0.89467 0.92823 0.90902 0.88932 0.89069 0.91536 0.92809 0.90491 0.86172 0.87253 0.91098 0.89762 0.88648 0.88244 0.92232 0.96265 0.89278 0.83940 0.92185 0.87254 0.76937 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.52 71.98 0.69 -0.63 16 2 C 0.06 0.66 3.92 31.10 0.12 0.78 16 3 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.15 -1.34 6.63 31.61 0.21 -1.13 16 5 C -0.16 -1.70 6.63 31.61 0.21 -1.49 16 6 C 0.08 0.97 3.26 31.10 0.10 1.07 16 7 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 8 C -0.10 -1.57 4.14 30.59 0.13 -1.45 16 9 C -0.12 -1.79 4.18 29.85 0.12 -1.67 16 10 C 0.50 11.35 7.67 87.66 0.67 12.03 16 11 O -0.59 -19.07 15.56 -3.03 -0.05 -19.12 16 12 N -0.61 -11.73 2.87 -846.76 -2.43 -14.17 16 13 C 0.07 0.69 10.24 127.77 1.31 2.00 16 14 C 0.12 2.87 5.67 86.38 0.49 3.36 16 15 C 0.06 1.49 6.01 86.30 0.52 2.01 16 16 N -0.68 -22.90 6.13 -517.94 -3.17 -26.07 16 17 C 0.07 2.42 6.17 85.56 0.53 2.95 16 18 C 0.44 21.59 7.82 87.65 0.69 22.28 16 19 O -0.62 -35.70 15.78 -3.08 -0.05 -35.75 16 20 N -0.57 -30.13 5.29 -306.98 -1.62 -31.75 16 21 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 25 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 O -0.39 -6.05 10.75 -148.98 -1.60 -7.66 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 33 H 0.07 0.70 7.86 -2.38 -0.02 0.68 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.88 7.88 -2.38 -0.02 0.86 16 37 H 0.05 1.15 8.10 -2.38 -0.02 1.14 16 38 H 0.08 1.36 8.10 -2.38 -0.02 1.34 16 39 H 0.12 1.05 7.40 -2.38 -0.02 1.03 16 40 H 0.11 1.39 7.92 -2.39 -0.02 1.37 16 41 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.08 0.74 8.07 -2.39 -0.02 0.72 16 43 H 0.10 0.52 6.44 -2.39 -0.02 0.51 16 44 H 0.10 2.12 8.07 -2.39 -0.02 2.10 16 45 H 0.06 1.71 7.42 -2.39 -0.02 1.70 16 46 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.34 12.61 8.43 -89.70 -0.76 11.85 16 49 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 51 H 0.40 19.79 7.90 -92.70 -0.73 19.06 16 52 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -76.82 424.09 -0.13 -76.95 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.58 Total: 40.69 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 7.06 Total: 21.25 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -6.95 Total: -121.91 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -1.70 Total: -62.53 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -76.82 -0.13 -76.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691614864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.370 kcal (2) G-P(sol) polarization free energy of solvation -76.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds