Wall clock time and date at job start Wed Apr 1 2020 00:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.27269 * 2 1 4 4 C 1.54947 * 110.39442 * 237.85681 * 2 1 3 5 5 C 1.55305 * 100.94425 * 204.59649 * 4 2 1 6 6 C 1.54387 * 102.24962 * 34.12994 * 5 4 2 7 7 H 1.09001 * 109.82619 * 98.16119 * 6 5 4 8 8 C 1.52999 * 109.82779 * 219.03797 * 6 5 4 9 9 C 1.53001 * 109.47043 * 185.00080 * 8 6 5 10 10 C 1.50704 * 109.47212 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34766 * 119.99810 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00724 * 0.02562 * 12 10 9 14 14 C 1.46511 * 119.99824 * 180.02562 * 12 10 9 15 15 C 1.52998 * 109.46974 * 90.00356 * 14 12 10 16 16 N 1.46896 * 109.47122 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00293 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47522 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99755 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00361 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00355 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99822 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00183 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00053 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99821 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47571 * 89.99643 * 25 23 21 27 27 H 1.48501 * 109.46917 * 209.99696 * 25 23 21 28 28 H 1.48499 * 109.47193 * 329.99092 * 25 23 21 29 29 O 1.43236 * 107.59079 * 338.64624 * 6 5 4 30 30 H 1.08998 * 109.46997 * 299.36318 * 1 2 3 31 31 H 1.08997 * 109.47228 * 59.36011 * 1 2 3 32 32 H 1.08997 * 109.46722 * 179.35970 * 1 2 3 33 33 H 1.09002 * 111.12827 * 86.67315 * 4 2 1 34 34 H 1.09008 * 111.12113 * 322.51283 * 4 2 1 35 35 H 1.08998 * 110.84418 * 275.94481 * 5 4 2 36 36 H 1.09003 * 110.84733 * 152.31891 * 5 4 2 37 37 H 1.08999 * 109.47104 * 305.00409 * 8 6 5 38 38 H 1.08998 * 109.46917 * 65.00466 * 8 6 5 39 39 H 1.08995 * 109.46954 * 300.00150 * 9 8 6 40 40 H 1.08998 * 109.46949 * 60.00405 * 9 8 6 41 41 H 1.09008 * 109.47174 * 89.99550 * 13 12 10 42 42 H 1.09000 * 109.47584 * 209.99767 * 13 12 10 43 43 H 1.09005 * 109.46835 * 330.00249 * 13 12 10 44 44 H 1.09002 * 109.47157 * 210.00068 * 14 12 10 45 45 H 1.08999 * 109.46803 * 330.00699 * 14 12 10 46 46 H 1.09002 * 109.46943 * 299.99843 * 15 14 12 47 47 H 1.08999 * 109.47168 * 59.99728 * 15 14 12 48 48 H 1.00903 * 110.99908 * 56.04557 * 16 15 14 49 49 H 1.09002 * 109.47564 * 300.00517 * 17 16 15 50 50 H 1.09003 * 109.46763 * 59.99983 * 17 16 15 51 51 H 0.97007 * 119.99841 * 0.02562 * 20 18 17 52 52 H 0.96996 * 120.00332 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7727 -1.2297 5 6 3.4723 -1.2001 -0.7170 6 6 3.2126 -1.4394 0.7860 7 1 3.0651 -2.5034 0.9708 8 6 4.4001 -0.9301 1.6053 9 6 4.1912 -1.2826 3.0794 10 6 5.3611 -0.7815 3.8865 11 8 6.2721 -0.1994 3.3368 12 7 5.3946 -0.9795 5.2191 13 6 4.2940 -1.6822 5.8833 14 6 6.5317 -0.4919 6.0038 15 6 6.2483 0.9340 6.4806 16 7 7.3887 1.4232 7.2668 17 6 7.1518 2.7929 7.7420 18 6 8.3399 3.2593 8.5431 19 8 9.2907 2.5233 8.7022 20 7 8.3464 4.4946 9.0819 21 6 9.4276 4.9191 9.8103 22 1 10.2742 4.2637 9.9520 23 6 9.4345 6.1929 10.3654 24 7 10.4709 6.5999 11.0631 25 14 7.9704 7.3267 10.1197 26 1 6.9955 7.1220 11.2209 27 1 8.4315 8.7383 10.1228 28 1 7.3204 7.0212 8.8200 29 8 2.0286 -0.7157 1.1413 30 1 -0.3633 0.5039 0.8956 31 1 -0.3633 0.5237 -0.8842 32 1 -0.3633 -1.0276 -0.0115 33 1 2.1516 -0.1201 -2.0990 34 1 1.4506 -1.6422 -1.4503 35 1 4.1987 -0.4006 -0.8626 36 1 3.8006 -2.1178 -1.2049 37 1 5.3167 -1.3980 1.2462 38 1 4.4782 0.1518 1.4981 39 1 3.2746 -0.8147 3.4385 40 1 4.1131 -2.3645 3.1867 41 1 4.5049 -2.7515 5.9028 42 1 4.1908 -1.3135 6.9038 43 1 3.3675 -1.5046 5.3372 44 1 6.6824 -1.1404 6.8668 45 1 7.4289 -0.4964 5.3847 46 1 6.0976 1.5825 5.6175 47 1 5.3511 0.9385 7.0995 48 1 8.2445 1.3681 6.7352 49 1 7.0071 3.4540 6.8875 50 1 6.2610 2.8106 8.3699 51 1 7.5861 5.0834 8.9544 52 1 10.4756 7.4890 11.4509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691614866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:36 Heat of formation + Delta-G solvation = -122.294353 kcal Electronic energy + Delta-G solvation = -29084.802023 eV Core-core repulsion = 24891.110772 eV Total energy + Delta-G solvation = -4193.691251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.42371 -39.82269 -38.44600 -36.48219 -35.01451 -34.29241 -33.83499 -32.71796 -31.65385 -31.30925 -29.83105 -27.20903 -27.07944 -25.72671 -24.04392 -23.17529 -22.04146 -21.98602 -20.83545 -19.45619 -19.17110 -18.29832 -17.54068 -17.31683 -16.49885 -16.42723 -16.03282 -15.70312 -15.58788 -14.88664 -14.76016 -14.37023 -14.23723 -14.16051 -13.84707 -13.72987 -13.47228 -13.25542 -13.12966 -13.03128 -12.84313 -12.71279 -12.63046 -12.39534 -12.28660 -12.18734 -12.04694 -11.86740 -11.62763 -11.48231 -11.32391 -11.26830 -11.17500 -11.13938 -11.01379 -10.57311 -9.98496 -9.95103 -9.89055 -9.54742 -8.94756 -8.54826 -8.17427 -8.12425 -6.28646 -3.79932 2.43943 2.72788 3.04990 3.08979 3.16868 3.30023 3.77209 4.01229 4.08759 4.12493 4.25613 4.27300 4.41652 4.62174 4.63989 4.72956 4.83860 4.85038 4.90549 4.92752 4.99356 5.04731 5.10640 5.15181 5.18530 5.22648 5.26184 5.27357 5.31207 5.37982 5.43720 5.49056 5.49676 5.59136 5.65186 5.70013 5.78294 5.79186 5.85203 5.89069 5.91943 5.97406 6.27464 6.65836 7.09107 7.14217 7.58164 7.61110 7.98087 8.17210 8.62538 8.97539 9.45107 9.85604 10.84531 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.001635 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.624010 B =17124.908684 C =18096.512539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.153 4.153 5 C -0.153 4.153 6 C 0.081 3.919 7 H 0.080 0.920 8 C -0.113 4.113 9 C -0.134 4.134 10 C 0.510 3.490 11 O -0.539 6.539 12 N -0.617 5.617 13 C 0.076 3.924 14 C 0.116 3.884 15 C 0.047 3.953 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.451 3.549 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 O -0.374 6.374 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.030 0.970 47 H 0.070 0.930 48 H 0.352 0.648 49 H 0.045 0.955 50 H 0.087 0.913 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.816 -17.930 -23.633 38.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.152 4.152 9 C -0.174 4.174 10 C 0.299 3.701 11 O -0.415 6.415 12 N -0.351 5.351 13 C -0.067 4.067 14 C -0.007 4.007 15 C -0.084 4.084 16 N -0.300 5.300 17 C -0.083 4.083 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 O -0.294 6.294 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.172 0.828 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.869 -18.245 -22.890 37.146 hybrid contribution -0.973 1.612 -0.934 2.102 sum -23.842 -16.632 -23.825 37.586 Atomic orbital electron populations 1.21880 0.93716 1.02726 1.02487 1.22960 0.94804 0.95696 0.84867 0.91253 1.23322 0.96262 1.00903 0.98532 1.23175 0.97817 1.02957 0.95076 1.22768 0.85340 0.96046 0.93537 0.90210 1.21751 0.97419 1.02938 0.93046 1.21643 0.97495 1.02572 0.95684 1.20835 0.88184 0.79144 0.81972 1.90714 1.38662 1.41783 1.70388 1.47875 1.22475 1.57594 1.07180 1.21854 0.89283 0.96744 0.98820 1.21408 0.88848 0.94818 0.95609 1.22256 0.94925 0.95442 0.95799 1.60019 1.04895 1.21956 1.43086 1.21689 0.98678 0.89380 0.98576 1.19694 0.89046 0.82852 0.84758 1.90563 1.36785 1.54469 1.62754 1.42202 1.18689 1.13471 1.48691 1.19443 0.97183 0.99981 1.26758 0.86259 1.25032 0.97282 0.96972 0.96867 1.69618 1.28995 1.19609 1.33950 0.86667 0.82709 0.81340 0.78653 1.19598 1.20190 1.19540 1.88433 1.41920 1.64860 1.34224 0.91791 0.91312 0.91988 0.89973 0.90325 0.90104 0.89932 0.90169 0.90650 0.88237 0.89111 0.92378 0.90588 0.90853 0.89339 0.89748 0.95149 0.91150 0.82810 0.93724 0.89508 0.79692 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.63 37.16 0.36 -0.41 16 2 C 0.07 0.47 4.07 -25.70 -0.10 0.36 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.15 -0.73 6.57 -24.48 -0.16 -0.89 16 5 C -0.15 -0.81 6.54 -24.78 -0.16 -0.97 16 6 C 0.08 0.53 3.51 -26.00 -0.09 0.44 16 7 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 8 C -0.11 -0.91 4.07 -26.73 -0.11 -1.02 16 9 C -0.13 -1.03 4.17 -27.88 -0.12 -1.15 16 10 C 0.51 5.71 7.67 -10.99 -0.08 5.63 16 11 O -0.54 -8.22 15.56 5.56 0.09 -8.13 16 12 N -0.62 -6.08 2.87 -181.56 -0.52 -6.60 16 13 C 0.08 0.47 10.24 59.85 0.61 1.08 16 14 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 15 C 0.05 0.61 6.01 -3.83 -0.02 0.59 16 16 N -0.67 -10.96 6.13 -115.06 -0.70 -11.67 16 17 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 18 C 0.45 10.60 7.82 -10.99 -0.09 10.51 16 19 O -0.56 -15.57 15.78 5.55 0.09 -15.48 16 20 N -0.59 -14.49 5.09 -10.97 -0.06 -14.54 16 21 C -0.30 -8.82 10.16 -14.93 -0.15 -8.97 16 22 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -26.11 13.96 55.50 0.77 -25.34 16 25 Si 0.88 19.73 27.74 -169.99 -4.71 15.01 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 29 O -0.37 -3.04 10.34 -35.23 -0.36 -3.41 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.34 8.06 -51.92 -0.42 -0.08 16 35 H 0.08 0.45 7.85 -51.93 -0.41 0.05 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.10 0.73 7.16 -51.93 -0.37 0.36 16 40 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 41 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 42 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 43 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 44 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.08 1.12 7.42 -51.93 -0.39 0.74 16 46 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.35 6.11 8.43 -39.29 -0.33 5.78 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.37 7.98 5.76 -40.82 -0.24 7.75 16 52 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 420.97 15.07 6.34 6.34 Total: -1.00 -35.86 420.97 -8.55 -44.41 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -9.21 Total: 10.98 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.27 Total: 8.43 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.51 Total: -58.15 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.19 Total: -27.02 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.86 -8.55 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691614866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.886 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds