Wall clock time and date at job start Wed Apr 1 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.33178 * 2 1 4 4 C 1.54479 * 110.37415 * 122.25376 * 2 1 3 5 5 C 1.54514 * 104.06448 * 142.91418 * 4 2 1 6 6 C 1.54485 * 104.06168 * 0.02562 * 5 4 2 7 7 H 1.08994 * 110.37416 * 94.95599 * 6 5 4 8 8 C 1.53001 * 110.36832 * 217.19020 * 6 5 4 9 9 C 1.52999 * 109.46762 * 184.99902 * 8 6 5 10 10 C 1.50700 * 109.47172 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99722 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00216 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00084 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00157 * 179.97438 * 12 10 9 15 15 C 1.52998 * 109.47337 * 270.00189 * 14 12 10 16 16 N 1.46899 * 109.47182 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00252 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47242 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99731 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99827 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99674 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99697 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00466 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99503 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47342 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46959 * 120.00300 * 25 23 21 28 28 H 1.48506 * 109.46772 * 240.00320 * 25 23 21 29 29 O 1.44428 * 110.46034 * 237.68721 * 2 1 3 30 30 H 1.09007 * 109.46830 * 297.74860 * 1 2 3 31 31 H 1.08994 * 109.47461 * 57.74956 * 1 2 3 32 32 H 1.08996 * 109.47456 * 177.75324 * 1 2 3 33 33 H 1.09007 * 110.51205 * 24.27484 * 4 2 1 34 34 H 1.09000 * 110.51515 * 261.56364 * 4 2 1 35 35 H 1.08997 * 110.51051 * 241.35626 * 5 4 2 36 36 H 1.08998 * 110.50841 * 118.64279 * 5 4 2 37 37 H 1.09000 * 109.47260 * 64.99533 * 8 6 5 38 38 H 1.08998 * 109.46903 * 304.99609 * 8 6 5 39 39 H 1.09000 * 109.47102 * 59.99485 * 9 8 6 40 40 H 1.08998 * 109.47172 * 299.99542 * 9 8 6 41 41 H 1.09001 * 109.47060 * 270.00360 * 13 12 10 42 42 H 1.09004 * 109.47073 * 29.99849 * 13 12 10 43 43 H 1.09000 * 109.47212 * 149.99932 * 13 12 10 44 44 H 1.09001 * 109.47057 * 30.00532 * 14 12 10 45 45 H 1.08999 * 109.47333 * 150.00092 * 14 12 10 46 46 H 1.08998 * 109.47036 * 299.99480 * 15 14 12 47 47 H 1.08992 * 109.47282 * 59.99942 * 15 14 12 48 48 H 1.00902 * 111.00531 * 56.04698 * 16 15 14 49 49 H 1.08997 * 109.46928 * 300.00223 * 17 16 15 50 50 H 1.09006 * 109.46564 * 59.99936 * 17 16 15 51 51 H 0.96997 * 120.00115 * 0.02562 * 20 18 17 52 52 H 0.97004 * 120.00292 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3194 -1.5029 0.6880 6 6 3.3901 -1.0842 -0.7974 7 1 4.0556 -0.2297 -0.9195 8 6 3.8653 -2.2559 -1.6589 9 6 4.0473 -1.7858 -3.1034 10 6 4.5160 -2.9396 -3.9519 11 8 4.6880 -4.0305 -3.4505 12 7 4.7440 -2.7594 -5.2679 13 6 4.5367 -1.4416 -5.8736 14 6 5.2002 -3.8810 -6.0927 15 6 6.7295 -3.9236 -6.0947 16 7 7.1869 -5.0479 -6.9222 17 6 8.6540 -5.1200 -6.9480 18 6 9.0848 -6.2830 -7.8041 19 8 8.2518 -6.9827 -8.3403 20 7 10.3958 -6.5450 -7.9746 21 6 10.7878 -7.6027 -8.7539 22 1 10.0460 -8.2257 -9.2313 23 6 12.1394 -7.8731 -8.9292 24 7 13.0419 -7.1153 -8.3479 25 14 12.6734 -9.3139 -9.9915 26 1 11.4736 -10.0041 -10.5291 27 1 13.5043 -8.8174 -11.1176 28 1 13.4670 -10.2652 -9.1726 29 8 2.0349 -0.7233 -1.1436 30 1 -0.3633 0.4785 0.9096 31 1 -0.3634 0.5483 -0.8691 32 1 -0.3634 -1.0268 -0.0403 33 1 1.3283 -1.4918 1.5775 34 1 2.3412 -0.0821 2.0223 35 1 3.1986 -2.5826 0.7755 36 1 4.2115 -1.1729 1.2203 37 1 3.1240 -3.0543 -1.6272 38 1 4.8156 -2.6270 -1.2751 39 1 4.7886 -0.9873 -3.1350 40 1 3.0970 -1.4147 -3.4872 41 1 3.5086 -1.3617 -6.2268 42 1 4.7271 -0.6665 -5.1312 43 1 5.2202 -1.3161 -6.7133 44 1 4.8112 -4.8138 -5.6846 45 1 4.8390 -3.7522 -7.1130 46 1 7.1185 -2.9908 -6.5029 47 1 7.0908 -4.0524 -5.0745 48 1 6.8119 -4.9852 -7.8568 49 1 9.0559 -4.1952 -7.3619 50 1 9.0288 -5.2573 -5.9337 51 1 11.0620 -5.9852 -7.5461 52 1 13.9855 -7.3043 -8.4700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691614872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:43 Heat of formation + Delta-G solvation = -128.259595 kcal Electronic energy + Delta-G solvation = -28868.736352 eV Core-core repulsion = 24674.786429 eV Total energy + Delta-G solvation = -4193.949923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33866 -39.76138 -38.25989 -36.42935 -34.93743 -34.29226 -33.77972 -32.64931 -31.32721 -31.15468 -29.74335 -27.18966 -26.98898 -25.62330 -24.10041 -23.19483 -22.10563 -21.59197 -21.19132 -19.39952 -19.04170 -17.85962 -17.30374 -16.98936 -16.60563 -16.22079 -16.18410 -15.60092 -15.54391 -15.25779 -14.54085 -14.29909 -14.17577 -14.07208 -13.83589 -13.67315 -13.56393 -13.29836 -13.09311 -13.07812 -12.78867 -12.67567 -12.57233 -12.17163 -12.10513 -11.98381 -11.91353 -11.52454 -11.47981 -11.45593 -11.26911 -11.16434 -11.08955 -11.02980 -10.93845 -10.32091 -10.20109 -10.13891 -9.89798 -9.49484 -8.89826 -8.41884 -8.03769 -7.93175 -6.39231 -3.79913 2.50184 2.76328 3.18460 3.28810 3.36512 3.37950 3.93902 4.07497 4.16096 4.18489 4.35439 4.46203 4.46749 4.48796 4.69218 4.77814 4.81858 4.91496 4.95125 4.97673 5.05462 5.08424 5.12854 5.19200 5.21569 5.27607 5.30055 5.32328 5.37580 5.41089 5.43802 5.48802 5.58097 5.62868 5.68800 5.75768 5.78629 5.89279 5.94557 5.99647 6.04002 6.27253 6.35865 6.50939 7.17715 7.22240 7.57972 7.68405 8.04328 8.09341 8.64131 9.20612 9.57138 10.08672 10.78673 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028757 B = 0.001405 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.454623 B =19919.636015 C =20388.331445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.069 0.931 8 C -0.098 4.098 9 C -0.136 4.136 10 C 0.510 3.490 11 O -0.532 6.532 12 N -0.618 5.618 13 C 0.077 3.923 14 C 0.116 3.884 15 C 0.048 3.952 16 N -0.665 5.665 17 C 0.053 3.947 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 O -0.368 6.368 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.348 0.652 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.903 21.750 16.901 34.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.087 0.913 8 C -0.136 4.136 9 C -0.176 4.176 10 C 0.299 3.701 11 O -0.408 6.408 12 N -0.353 5.353 13 C -0.066 4.066 14 C -0.007 4.007 15 C -0.082 4.082 16 N -0.298 5.298 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 O -0.287 6.287 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.092 0.908 48 H 0.167 0.833 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.348 20.159 17.094 33.975 hybrid contribution 1.264 0.675 -0.696 1.593 sum -20.083 20.833 16.398 33.261 Atomic orbital electron populations 1.21803 0.93241 1.03042 1.02346 1.22953 0.95312 0.95330 0.85260 0.91534 1.23008 0.97859 0.99821 0.98283 1.22985 0.98419 1.01946 0.95654 1.23042 0.84648 0.96955 0.93632 0.91278 1.21431 1.02849 0.96793 0.92517 1.21675 1.03267 0.97033 0.95620 1.20770 0.77119 0.90284 0.81973 1.90742 1.51352 1.26781 1.71934 1.47861 1.67327 1.11295 1.08781 1.21830 1.01703 0.83816 0.99275 1.21409 0.94077 0.90354 0.94826 1.22258 0.95038 0.91798 0.99143 1.59937 1.08251 1.43303 1.18335 1.21656 0.88251 0.97164 1.00886 1.19800 0.83454 0.87925 0.86117 1.90520 1.51555 1.51928 1.52619 1.41867 1.05112 1.28517 1.44620 1.19768 0.91933 1.06367 1.24737 0.87843 1.25258 0.95491 0.98980 0.98233 1.69620 1.01539 1.39162 1.44064 0.85799 0.78725 0.80586 0.79228 1.19195 1.20806 1.20744 1.89163 1.26923 1.74498 1.38147 0.91243 0.91880 0.91704 0.90533 0.90670 0.90217 0.90452 0.90129 0.89689 0.89088 0.88346 0.92375 0.90953 0.90886 0.88630 0.90555 0.95721 0.90810 0.83269 0.93928 0.89583 0.77469 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.52 37.16 0.35 -0.40 16 2 C 0.07 0.42 3.92 -25.96 -0.10 0.32 16 3 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 4 C -0.15 -0.80 6.63 -25.16 -0.17 -0.97 16 5 C -0.15 -0.92 6.63 -25.16 -0.17 -1.08 16 6 C 0.07 0.52 3.25 -25.95 -0.08 0.44 16 7 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 8 C -0.10 -0.83 4.13 -26.73 -0.11 -0.94 16 9 C -0.14 -1.09 4.19 -27.88 -0.12 -1.20 16 10 C 0.51 5.94 7.67 -10.99 -0.08 5.86 16 11 O -0.53 -8.48 15.56 5.55 0.09 -8.40 16 12 N -0.62 -6.32 2.87 -181.57 -0.52 -6.84 16 13 C 0.08 0.48 10.24 59.85 0.61 1.10 16 14 C 0.12 1.41 5.67 -4.04 -0.02 1.38 16 15 C 0.05 0.66 6.01 -3.83 -0.02 0.64 16 16 N -0.67 -11.41 6.13 -115.06 -0.70 -12.11 16 17 C 0.05 0.99 6.17 -4.97 -0.03 0.96 16 18 C 0.44 10.78 7.82 -10.98 -0.09 10.69 16 19 O -0.58 -16.26 15.78 5.56 0.09 -16.17 16 20 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 21 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 O -0.37 -3.10 10.83 -35.23 -0.38 -3.48 16 30 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.40 7.87 -51.92 -0.41 -0.01 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.09 0.54 7.40 -51.93 -0.38 0.16 16 40 H 0.10 0.73 7.97 -51.93 -0.41 0.31 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 43 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 44 H 0.10 1.41 7.42 -51.93 -0.39 1.02 16 45 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 51 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 424.23 15.07 6.39 6.39 Total: -1.00 -34.96 424.23 -8.92 -43.88 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -9.25 Total: 10.67 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.27 Total: 8.65 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.56 Total: -57.87 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.21 Total: -28.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.96 -8.92 -43.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691614872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.383 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds