Wall clock time and date at job start Wed Apr 1 2020 00:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.33178 * 2 1 4 4 C 1.54479 * 110.37415 * 122.25376 * 2 1 3 5 5 C 1.54514 * 104.06448 * 142.91418 * 4 2 1 6 6 C 1.54485 * 104.06168 * 0.02562 * 5 4 2 7 7 H 1.08994 * 110.37416 * 94.95599 * 6 5 4 8 8 C 1.53001 * 110.36832 * 217.19020 * 6 5 4 9 9 C 1.52999 * 109.46762 * 184.99902 * 8 6 5 10 10 C 1.50700 * 109.47172 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99722 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00216 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00084 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00157 * 179.97438 * 12 10 9 15 15 C 1.52998 * 109.47337 * 270.00189 * 14 12 10 16 16 N 1.46899 * 109.47182 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00252 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47242 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99731 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99827 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99674 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99697 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00466 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99503 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47342 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46959 * 120.00300 * 25 23 21 28 28 H 1.48506 * 109.46772 * 240.00320 * 25 23 21 29 29 O 1.44428 * 110.46034 * 237.68721 * 2 1 3 30 30 H 1.09007 * 109.46830 * 297.74860 * 1 2 3 31 31 H 1.08994 * 109.47461 * 57.74956 * 1 2 3 32 32 H 1.08996 * 109.47456 * 177.75324 * 1 2 3 33 33 H 1.09007 * 110.51205 * 24.27484 * 4 2 1 34 34 H 1.09000 * 110.51515 * 261.56364 * 4 2 1 35 35 H 1.08997 * 110.51051 * 241.35626 * 5 4 2 36 36 H 1.08998 * 110.50841 * 118.64279 * 5 4 2 37 37 H 1.09000 * 109.47260 * 64.99533 * 8 6 5 38 38 H 1.08998 * 109.46903 * 304.99609 * 8 6 5 39 39 H 1.09000 * 109.47102 * 59.99485 * 9 8 6 40 40 H 1.08998 * 109.47172 * 299.99542 * 9 8 6 41 41 H 1.09001 * 109.47060 * 270.00360 * 13 12 10 42 42 H 1.09004 * 109.47073 * 29.99849 * 13 12 10 43 43 H 1.09000 * 109.47212 * 149.99932 * 13 12 10 44 44 H 1.09001 * 109.47057 * 30.00532 * 14 12 10 45 45 H 1.08999 * 109.47333 * 150.00092 * 14 12 10 46 46 H 1.08998 * 109.47036 * 299.99480 * 15 14 12 47 47 H 1.08992 * 109.47282 * 59.99942 * 15 14 12 48 48 H 1.00902 * 111.00531 * 56.04698 * 16 15 14 49 49 H 1.08997 * 109.46928 * 300.00223 * 17 16 15 50 50 H 1.09006 * 109.46564 * 59.99936 * 17 16 15 51 51 H 0.96997 * 120.00115 * 0.02562 * 20 18 17 52 52 H 0.97004 * 120.00292 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3194 -1.5029 0.6880 6 6 3.3901 -1.0842 -0.7974 7 1 4.0556 -0.2297 -0.9195 8 6 3.8653 -2.2559 -1.6589 9 6 4.0473 -1.7858 -3.1034 10 6 4.5160 -2.9396 -3.9519 11 8 4.6880 -4.0305 -3.4505 12 7 4.7440 -2.7594 -5.2679 13 6 4.5367 -1.4416 -5.8736 14 6 5.2002 -3.8810 -6.0927 15 6 6.7295 -3.9236 -6.0947 16 7 7.1869 -5.0479 -6.9222 17 6 8.6540 -5.1200 -6.9480 18 6 9.0848 -6.2830 -7.8041 19 8 8.2518 -6.9827 -8.3403 20 7 10.3958 -6.5450 -7.9746 21 6 10.7878 -7.6027 -8.7539 22 1 10.0460 -8.2257 -9.2313 23 6 12.1394 -7.8731 -8.9292 24 7 13.0419 -7.1153 -8.3479 25 14 12.6734 -9.3139 -9.9915 26 1 11.4736 -10.0041 -10.5291 27 1 13.5043 -8.8174 -11.1176 28 1 13.4670 -10.2652 -9.1726 29 8 2.0349 -0.7233 -1.1436 30 1 -0.3633 0.4785 0.9096 31 1 -0.3634 0.5483 -0.8691 32 1 -0.3634 -1.0268 -0.0403 33 1 1.3283 -1.4918 1.5775 34 1 2.3412 -0.0821 2.0223 35 1 3.1986 -2.5826 0.7755 36 1 4.2115 -1.1729 1.2203 37 1 3.1240 -3.0543 -1.6272 38 1 4.8156 -2.6270 -1.2751 39 1 4.7886 -0.9873 -3.1350 40 1 3.0970 -1.4147 -3.4872 41 1 3.5086 -1.3617 -6.2268 42 1 4.7271 -0.6665 -5.1312 43 1 5.2202 -1.3161 -6.7133 44 1 4.8112 -4.8138 -5.6846 45 1 4.8390 -3.7522 -7.1130 46 1 7.1185 -2.9908 -6.5029 47 1 7.0908 -4.0524 -5.0745 48 1 6.8119 -4.9852 -7.8568 49 1 9.0559 -4.1952 -7.3619 50 1 9.0288 -5.2573 -5.9337 51 1 11.0620 -5.9852 -7.5461 52 1 13.9855 -7.3043 -8.4700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691614872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:42 Heat of formation + Delta-G solvation = -153.959698 kcal Electronic energy + Delta-G solvation = -28869.850792 eV Core-core repulsion = 24674.786429 eV Total energy + Delta-G solvation = -4195.064363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11974 -40.39568 -40.15631 -37.57700 -36.23789 -35.71536 -34.92420 -33.29546 -33.14081 -31.92713 -30.76786 -28.21492 -27.78879 -26.85698 -25.56177 -24.05030 -23.02563 -22.17392 -21.70512 -21.15336 -20.07511 -19.86826 -18.12781 -17.92349 -17.55951 -17.20651 -17.11740 -16.87805 -16.52390 -16.37071 -15.89578 -15.86569 -15.37822 -15.04039 -14.90538 -14.66874 -14.52857 -14.19486 -14.01688 -13.83815 -13.75930 -13.53548 -13.40404 -13.31629 -13.16009 -13.02640 -12.94493 -12.76887 -12.57721 -12.50550 -12.41831 -12.12579 -12.11162 -12.04655 -11.76630 -11.64412 -11.52967 -11.49057 -10.83105 -10.64585 -10.40873 -10.03404 -9.72139 -9.38786 -8.48069 -5.97140 1.36087 1.41494 1.56005 1.62220 1.93825 2.02211 2.29275 2.89494 2.96573 3.18919 3.47707 3.55287 3.71216 3.77547 3.96040 4.00342 4.04400 4.07791 4.13353 4.27736 4.32492 4.33418 4.40993 4.43313 4.45371 4.50916 4.55374 4.57235 4.66119 4.67193 4.73092 4.82040 4.84859 4.94937 4.96826 4.98064 4.99315 5.10879 5.17356 5.20808 5.26928 5.32450 5.39911 5.48386 5.83143 6.02706 6.05037 6.34662 6.41310 6.58041 7.10766 7.18067 7.53486 8.08691 8.69604 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028757 B = 0.001405 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.454623 B =19919.636015 C =20388.331445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.155 4.155 6 C 0.078 3.922 7 H 0.088 0.912 8 C -0.096 4.096 9 C -0.124 4.124 10 C 0.502 3.498 11 O -0.587 6.587 12 N -0.615 5.615 13 C 0.070 3.930 14 C 0.121 3.879 15 C 0.059 3.941 16 N -0.684 5.684 17 C 0.068 3.932 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 O -0.390 6.390 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.349 0.651 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 24.338 17.067 36.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.193 4.193 6 C 0.020 3.980 7 H 0.106 0.894 8 C -0.134 4.134 9 C -0.164 4.164 10 C 0.292 3.708 11 O -0.467 6.467 12 N -0.348 5.348 13 C -0.072 4.072 14 C -0.003 4.003 15 C -0.071 4.071 16 N -0.318 5.318 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.197 1.197 29 O -0.311 6.311 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.168 0.832 49 H 0.090 0.910 50 H 0.114 0.886 51 H 0.231 0.769 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.098 22.814 17.263 35.547 hybrid contribution 1.140 -0.099 -0.738 1.362 sum -19.958 22.715 16.524 34.458 Atomic orbital electron populations 1.21821 0.92845 1.02483 1.03195 1.23148 0.95754 0.95771 0.84806 0.90273 1.23015 0.97288 0.99935 0.98481 1.23015 0.99529 1.01323 0.95458 1.23057 0.84554 0.96753 0.93608 0.89411 1.21360 1.01675 0.96849 0.93489 1.21672 1.04395 0.96039 0.94283 1.21488 0.76297 0.90476 0.82550 1.90719 1.53840 1.29058 1.73072 1.47973 1.66241 1.12276 1.08316 1.22134 1.02894 0.81970 1.00176 1.21229 0.93090 0.90044 0.95956 1.22186 0.95857 0.91564 0.97511 1.59881 1.07336 1.45689 1.18853 1.21493 0.89402 0.95489 1.00037 1.20818 0.82504 0.88671 0.85552 1.90487 1.52437 1.53730 1.54243 1.41924 1.05938 1.28309 1.44722 1.19729 0.92293 1.07817 1.26678 0.90304 1.26051 0.94917 1.01260 0.98934 1.69676 1.02031 1.40065 1.44315 0.84855 0.78077 0.77426 0.77873 1.19804 1.19370 1.19655 1.89136 1.27564 1.74984 1.39367 0.89466 0.92056 0.92866 0.90923 0.88910 0.91564 0.89043 0.92845 0.90488 0.86138 0.87245 0.91062 0.88690 0.89805 0.92029 0.88412 0.93082 0.92556 0.83164 0.90984 0.88586 0.76948 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.52 71.98 0.69 -0.66 16 2 C 0.06 0.67 3.92 31.10 0.12 0.79 16 3 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.15 -1.37 6.63 31.61 0.21 -1.16 16 5 C -0.16 -1.74 6.63 31.61 0.21 -1.53 16 6 C 0.08 0.99 3.25 31.10 0.10 1.09 16 7 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 8 C -0.10 -1.62 4.13 30.59 0.13 -1.49 16 9 C -0.12 -1.81 4.19 29.85 0.13 -1.68 16 10 C 0.50 11.55 7.67 87.66 0.67 12.23 16 11 O -0.59 -19.64 15.56 -3.04 -0.05 -19.69 16 12 N -0.62 -11.73 2.87 -846.75 -2.43 -14.17 16 13 C 0.07 0.66 10.24 127.77 1.31 1.96 16 14 C 0.12 2.85 5.67 86.38 0.49 3.34 16 15 C 0.06 1.54 6.01 86.30 0.52 2.05 16 16 N -0.68 -23.11 6.13 -517.94 -3.17 -26.28 16 17 C 0.07 2.48 6.17 85.56 0.53 3.00 16 18 C 0.44 21.59 7.82 87.66 0.69 22.28 16 19 O -0.62 -35.66 15.78 -3.04 -0.05 -35.71 16 20 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 21 C -0.34 -19.49 9.68 84.04 0.81 -18.67 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.23 13.05 21.66 0.28 -49.94 16 25 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 29 O -0.39 -6.15 10.83 -148.98 -1.61 -7.77 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.71 7.87 -2.38 -0.02 0.69 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.90 7.87 -2.39 -0.02 0.89 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.12 1.05 7.40 -2.39 -0.02 1.03 16 40 H 0.11 1.39 7.97 -2.39 -0.02 1.37 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.49 6.44 -2.38 -0.02 0.47 16 43 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 44 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 45 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.35 11.63 8.43 -89.69 -0.76 10.88 16 49 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.10 3.31 8.14 -2.38 -0.02 3.30 16 51 H 0.40 19.80 7.90 -92.71 -0.73 19.06 16 52 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -78.32 424.23 -0.14 -78.47 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.58 Total: 39.93 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 7.06 Total: 21.37 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -6.95 Total: -122.16 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -1.71 Total: -63.16 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -78.32 -0.14 -78.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691614872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.495 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds