Wall clock time and date at job start Wed Apr 1 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00141 * 2 1 4 4 H 1.08999 * 109.46760 * 329.99889 * 3 2 1 5 5 C 1.52999 * 109.47177 * 89.99803 * 3 2 1 6 6 C 1.50698 * 109.47045 * 210.00056 * 3 2 1 7 7 O 1.21278 * 120.00125 * 344.40834 * 6 3 2 8 8 N 1.34782 * 119.99837 * 164.40533 * 6 3 2 9 9 C 1.46920 * 120.63117 * 4.11982 * 8 6 3 10 10 C 1.53625 * 108.54517 * 126.36588 * 9 8 6 11 11 C 1.53038 * 109.23875 * 54.85675 * 10 9 8 12 12 C 1.53000 * 109.46172 * 178.48977 * 11 10 9 13 13 H 1.09006 * 109.46860 * 60.06794 * 12 11 10 14 14 C 1.52998 * 109.47361 * 180.02562 * 12 11 10 15 15 N 1.46897 * 109.47333 * 300.07062 * 12 11 10 16 16 C 1.46898 * 111.00119 * 154.99761 * 15 12 11 17 17 C 1.50702 * 109.46815 * 180.02562 * 16 15 12 18 18 O 1.21287 * 120.00215 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00373 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99262 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00628 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00175 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99722 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47280 * 89.99645 * 24 22 20 26 26 H 1.48500 * 109.47161 * 209.99778 * 24 22 20 27 27 H 1.48499 * 109.46913 * 329.99591 * 24 22 20 28 28 C 1.53042 * 109.53923 * 298.51126 * 11 10 9 29 29 C 1.46924 * 120.62817 * 184.39967 * 8 6 3 30 30 H 1.09008 * 109.47289 * 59.99846 * 1 2 3 31 31 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47070 * 300.00261 * 1 2 3 33 33 H 1.08999 * 109.46955 * 181.44231 * 5 3 2 34 34 H 1.08999 * 109.47075 * 301.44878 * 5 3 2 35 35 H 1.09002 * 109.46589 * 61.44648 * 5 3 2 36 36 H 1.08994 * 109.58752 * 246.20198 * 9 8 6 37 37 H 1.09008 * 109.58838 * 6.62478 * 9 8 6 38 38 H 1.08992 * 109.63386 * 294.86988 * 10 9 8 39 39 H 1.08996 * 109.45682 * 174.74128 * 10 9 8 40 40 H 1.09006 * 109.45031 * 58.52483 * 11 10 9 41 41 H 1.08998 * 109.46962 * 59.99855 * 14 12 11 42 42 H 1.08997 * 109.47345 * 180.02562 * 14 12 11 43 43 H 1.09004 * 109.46930 * 300.00233 * 14 12 11 44 44 H 1.00901 * 111.00119 * 278.95471 * 15 12 11 45 45 H 1.09003 * 109.46857 * 299.99562 * 16 15 12 46 46 H 1.08992 * 109.47046 * 59.99969 * 16 15 12 47 47 H 0.97001 * 120.00181 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00393 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.49762 * 301.41808 * 28 11 10 50 50 H 1.09003 * 109.52383 * 181.33055 * 28 11 10 51 51 H 1.08999 * 109.58751 * 353.37431 * 29 8 6 52 52 H 1.09000 * 109.58786 * 113.65863 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.8809 0.1996 -0.9204 8 7 3.9240 2.4094 -1.1125 9 6 3.3247 3.7107 -0.7867 10 6 4.3869 4.5781 -0.0943 11 6 5.6277 4.6636 -0.9860 12 6 6.6747 5.5573 -0.3182 13 1 6.9509 5.1342 0.6476 14 6 7.9151 5.6435 -1.2097 15 7 6.1172 6.9022 -0.1222 16 6 6.7886 7.5940 0.9862 17 6 6.1909 8.9668 1.1572 18 8 5.2942 9.3330 0.4272 19 7 6.6528 9.7875 2.1213 20 6 6.1087 11.0362 2.2773 21 1 5.3103 11.3623 1.6272 22 6 6.5845 11.8822 3.2715 23 7 6.0633 13.0793 3.4206 24 14 7.9660 11.3184 4.3954 25 1 9.2735 11.6914 3.7981 26 1 7.8232 11.9715 5.7214 27 1 7.8996 9.8441 4.5600 28 6 6.2088 3.2625 -1.1901 29 6 5.1703 2.3803 -1.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.6373 2.7773 1.4425 34 1 1.2604 1.7768 1.9637 35 1 2.9032 1.0917 1.9487 36 1 2.9906 4.1986 -1.7023 37 1 2.4767 3.5652 -0.1174 38 1 4.6568 4.1322 0.8629 39 1 3.9874 5.5788 0.0702 40 1 5.3520 5.0866 -1.9520 41 1 7.6395 6.0662 -2.1759 42 1 8.6612 6.2798 -0.7338 43 1 8.3285 4.6453 -1.3545 44 1 6.1713 7.4435 -0.9720 45 1 6.6550 7.0229 1.9051 46 1 7.8523 7.6852 0.7665 47 1 7.3697 9.4945 2.7054 48 1 6.3952 13.6698 4.1150 49 1 6.4615 2.8290 -0.2225 50 1 7.1061 3.3265 -1.8057 51 1 5.5404 1.3568 -1.9490 52 1 4.9831 2.7597 -2.8947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691644026.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:28 Heat of formation + Delta-G solvation = -112.769701 kcal Electronic energy + Delta-G solvation = -30571.315717 eV Core-core repulsion = 26378.037486 eV Total energy + Delta-G solvation = -4193.278231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74926 -39.02192 -38.33620 -37.60863 -36.10518 -34.04698 -33.29475 -32.06143 -31.66606 -30.98224 -29.71340 -27.20841 -26.65839 -25.95166 -24.41903 -23.58573 -23.03212 -21.60551 -20.54662 -19.50300 -19.22101 -18.34807 -17.85275 -17.02489 -16.12903 -16.08462 -15.79688 -15.52308 -15.11530 -14.92170 -14.82783 -14.74006 -14.49107 -14.24263 -14.07602 -13.63047 -13.47806 -13.27781 -13.23474 -12.98300 -12.69014 -12.61680 -12.44401 -12.41365 -12.19063 -12.13969 -12.01884 -11.70934 -11.55474 -11.45329 -11.41653 -11.19593 -10.78802 -10.64516 -10.62371 -10.53358 -10.29883 -10.00201 -9.71756 -9.59935 -8.89815 -8.60498 -8.21921 -8.12830 -6.33788 -3.85260 2.33080 2.46393 3.00177 3.04197 3.12858 3.51343 3.71658 4.01457 4.08004 4.13173 4.42251 4.48347 4.57359 4.62579 4.71510 4.83202 4.90392 4.91313 4.97475 5.04731 5.10446 5.13230 5.17381 5.19040 5.20743 5.29322 5.29821 5.31182 5.40333 5.55300 5.56917 5.63449 5.68042 5.73128 5.75529 5.76881 5.83569 5.88640 5.95015 6.06401 6.11339 6.27211 6.38455 6.64986 7.10169 7.11971 7.55243 7.57431 7.91946 8.11851 8.57016 8.92328 9.39874 9.80042 10.79290 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.002125 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.042484 B =13175.143051 C =14158.608036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.070 3.930 4 H 0.085 0.915 5 C -0.176 4.176 6 C 0.518 3.482 7 O -0.526 6.526 8 N -0.609 5.609 9 C 0.097 3.903 10 C -0.122 4.122 11 C -0.072 4.072 12 C 0.087 3.913 13 H 0.075 0.925 14 C -0.186 4.186 15 N -0.661 5.661 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.131 4.131 29 C 0.114 3.886 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.351 0.649 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -23.285 -7.205 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.280 6.280 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.233 4.233 6 C 0.305 3.695 7 O -0.401 6.401 8 N -0.345 5.345 9 C -0.026 4.026 10 C -0.160 4.160 11 C -0.091 4.091 12 C -0.023 4.023 13 H 0.094 0.906 14 C -0.245 4.245 15 N -0.293 5.293 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.447 6.447 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.170 4.170 29 C -0.008 4.008 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.171 0.829 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.109 0.891 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.153 -23.780 -7.303 25.220 hybrid contribution 1.794 0.347 0.699 1.956 sum -2.359 -23.432 -6.604 24.459 Atomic orbital electron populations 1.22898 0.80537 1.03275 1.00169 1.88043 1.19708 1.25251 1.94982 1.21953 0.93460 0.86677 0.97022 0.89765 1.22336 1.03718 1.02561 0.94696 1.20369 0.86646 0.83743 0.78785 1.90695 1.64563 1.29443 1.55376 1.48110 1.25551 1.05899 1.54891 1.22138 0.96749 0.82993 1.00688 1.21953 0.94825 1.01154 0.98092 1.21064 0.94982 0.93631 0.99431 1.21595 0.91985 0.90326 0.98423 0.90641 1.22588 0.99052 1.02222 1.00670 1.60159 1.57164 1.02471 1.09490 1.21722 0.95951 0.94825 0.95954 1.19731 0.86508 0.86234 0.83957 1.90559 1.31720 1.76070 1.46359 1.42222 1.34619 1.15331 1.30886 1.19422 1.18807 0.88217 1.16910 0.86292 1.25042 0.98085 0.95483 0.97589 1.69617 1.41781 1.07268 1.33442 0.86675 0.82645 0.78766 0.81313 1.19681 1.20163 1.19492 1.22051 0.98089 0.95274 1.01558 1.21594 0.83564 1.01758 0.93888 0.93816 0.89109 0.93659 0.90173 0.90998 0.90981 0.90896 0.89635 0.91933 0.88207 0.90817 0.92268 0.92680 0.91910 0.82938 0.89653 0.93858 0.79726 0.91607 0.91471 0.90412 0.89121 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.95 9.93 -54.64 -0.54 -4.49 16 3 C 0.07 0.65 2.28 -27.88 -0.06 0.58 16 4 H 0.08 0.58 6.92 -51.93 -0.36 0.22 16 5 C -0.18 -1.35 9.17 37.16 0.34 -1.01 16 6 C 0.52 6.05 7.00 -10.98 -0.08 5.97 16 7 O -0.53 -8.28 15.99 -13.85 -0.22 -8.50 16 8 N -0.61 -5.75 2.97 -172.51 -0.51 -6.26 16 9 C 0.10 0.75 5.72 -3.49 -0.02 0.73 16 10 C -0.12 -1.11 5.24 -26.39 -0.14 -1.25 16 11 C -0.07 -0.63 1.92 -90.58 -0.17 -0.80 16 12 C 0.09 0.87 2.17 -67.72 -0.15 0.73 16 13 H 0.08 0.77 7.80 -51.93 -0.40 0.37 16 14 C -0.19 -1.66 8.81 37.16 0.33 -1.34 16 15 N -0.66 -8.95 5.08 -108.00 -0.55 -9.49 16 16 C 0.05 0.74 5.97 -4.98 -0.03 0.71 16 17 C 0.45 9.76 7.82 -10.98 -0.09 9.67 16 18 O -0.57 -14.53 15.78 5.55 0.09 -14.45 16 19 N -0.59 -13.69 5.09 -10.96 -0.06 -13.75 16 20 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 21 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.42 13.96 55.50 0.77 -24.65 16 24 Si 0.88 19.06 27.74 -169.99 -4.72 14.35 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 28 C -0.13 -1.04 5.04 -26.61 -0.13 -1.18 16 29 C 0.11 1.00 6.44 -3.71 -0.02 0.98 16 30 H 0.04 0.24 8.09 -51.92 -0.42 -0.18 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.24 7.84 -51.93 -0.41 -0.17 16 33 H 0.08 0.55 6.07 -51.93 -0.32 0.24 16 34 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.55 4.34 -51.92 -0.23 0.33 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.10 7.56 -51.93 -0.39 0.71 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 42 H 0.05 0.53 7.46 -51.93 -0.39 0.14 16 43 H 0.06 0.48 6.40 -51.93 -0.33 0.14 16 44 H 0.35 5.07 8.18 -39.29 -0.32 4.75 16 45 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 46 H 0.04 0.59 7.44 -51.93 -0.39 0.21 16 47 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 48 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.53 6.36 -51.93 -0.33 0.20 16 51 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -34.76 405.23 -7.65 -42.41 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -8.64 Total: 11.25 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 0.62 Total: 7.48 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.34 Total: -54.15 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.68 Total: -27.44 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.72 Total: 14.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.76 -7.65 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691644026.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.360 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds