Wall clock time and date at job start Wed Apr 1 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00141 * 2 1 4 4 H 1.08999 * 109.46760 * 329.99889 * 3 2 1 5 5 C 1.52999 * 109.47177 * 89.99803 * 3 2 1 6 6 C 1.50698 * 109.47045 * 210.00056 * 3 2 1 7 7 O 1.21278 * 120.00125 * 344.40834 * 6 3 2 8 8 N 1.34782 * 119.99837 * 164.40533 * 6 3 2 9 9 C 1.46920 * 120.63117 * 4.11982 * 8 6 3 10 10 C 1.53625 * 108.54517 * 126.36588 * 9 8 6 11 11 C 1.53038 * 109.23875 * 54.85675 * 10 9 8 12 12 C 1.53000 * 109.46172 * 178.48977 * 11 10 9 13 13 H 1.09006 * 109.46860 * 60.06794 * 12 11 10 14 14 C 1.52998 * 109.47361 * 180.02562 * 12 11 10 15 15 N 1.46897 * 109.47333 * 300.07062 * 12 11 10 16 16 C 1.46898 * 111.00119 * 154.99761 * 15 12 11 17 17 C 1.50702 * 109.46815 * 180.02562 * 16 15 12 18 18 O 1.21287 * 120.00215 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00373 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99262 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00628 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00175 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99722 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47280 * 89.99645 * 24 22 20 26 26 H 1.48500 * 109.47161 * 209.99778 * 24 22 20 27 27 H 1.48499 * 109.46913 * 329.99591 * 24 22 20 28 28 C 1.53042 * 109.53923 * 298.51126 * 11 10 9 29 29 C 1.46924 * 120.62817 * 184.39967 * 8 6 3 30 30 H 1.09008 * 109.47289 * 59.99846 * 1 2 3 31 31 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47070 * 300.00261 * 1 2 3 33 33 H 1.08999 * 109.46955 * 181.44231 * 5 3 2 34 34 H 1.08999 * 109.47075 * 301.44878 * 5 3 2 35 35 H 1.09002 * 109.46589 * 61.44648 * 5 3 2 36 36 H 1.08994 * 109.58752 * 246.20198 * 9 8 6 37 37 H 1.09008 * 109.58838 * 6.62478 * 9 8 6 38 38 H 1.08992 * 109.63386 * 294.86988 * 10 9 8 39 39 H 1.08996 * 109.45682 * 174.74128 * 10 9 8 40 40 H 1.09006 * 109.45031 * 58.52483 * 11 10 9 41 41 H 1.08998 * 109.46962 * 59.99855 * 14 12 11 42 42 H 1.08997 * 109.47345 * 180.02562 * 14 12 11 43 43 H 1.09004 * 109.46930 * 300.00233 * 14 12 11 44 44 H 1.00901 * 111.00119 * 278.95471 * 15 12 11 45 45 H 1.09003 * 109.46857 * 299.99562 * 16 15 12 46 46 H 1.08992 * 109.47046 * 59.99969 * 16 15 12 47 47 H 0.97001 * 120.00181 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00393 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.49762 * 301.41808 * 28 11 10 50 50 H 1.09003 * 109.52383 * 181.33055 * 28 11 10 51 51 H 1.08999 * 109.58751 * 353.37431 * 29 8 6 52 52 H 1.09000 * 109.58786 * 113.65863 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.8809 0.1996 -0.9204 8 7 3.9240 2.4094 -1.1125 9 6 3.3247 3.7107 -0.7867 10 6 4.3869 4.5781 -0.0943 11 6 5.6277 4.6636 -0.9860 12 6 6.6747 5.5573 -0.3182 13 1 6.9509 5.1342 0.6476 14 6 7.9151 5.6435 -1.2097 15 7 6.1172 6.9022 -0.1222 16 6 6.7886 7.5940 0.9862 17 6 6.1909 8.9668 1.1572 18 8 5.2942 9.3330 0.4272 19 7 6.6528 9.7875 2.1213 20 6 6.1087 11.0362 2.2773 21 1 5.3103 11.3623 1.6272 22 6 6.5845 11.8822 3.2715 23 7 6.0633 13.0793 3.4206 24 14 7.9660 11.3184 4.3954 25 1 9.2735 11.6914 3.7981 26 1 7.8232 11.9715 5.7214 27 1 7.8996 9.8441 4.5600 28 6 6.2088 3.2625 -1.1901 29 6 5.1703 2.3803 -1.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.6373 2.7773 1.4425 34 1 1.2604 1.7768 1.9637 35 1 2.9032 1.0917 1.9487 36 1 2.9906 4.1986 -1.7023 37 1 2.4767 3.5652 -0.1174 38 1 4.6568 4.1322 0.8629 39 1 3.9874 5.5788 0.0702 40 1 5.3520 5.0866 -1.9520 41 1 7.6395 6.0662 -2.1759 42 1 8.6612 6.2798 -0.7338 43 1 8.3285 4.6453 -1.3545 44 1 6.1713 7.4435 -0.9720 45 1 6.6550 7.0229 1.9051 46 1 7.8523 7.6852 0.7665 47 1 7.3697 9.4945 2.7054 48 1 6.3952 13.6698 4.1150 49 1 6.4615 2.8290 -0.2225 50 1 7.1061 3.3265 -1.8057 51 1 5.5404 1.3568 -1.9490 52 1 4.9831 2.7597 -2.8947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691644026.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:27 Heat of formation + Delta-G solvation = -138.814766 kcal Electronic energy + Delta-G solvation = -30572.445116 eV Core-core repulsion = 26378.037486 eV Total energy + Delta-G solvation = -4194.407630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54315 -40.35893 -39.46557 -38.46381 -37.10103 -35.94788 -34.22903 -33.70814 -32.80133 -31.70047 -30.60760 -28.05840 -27.75435 -26.78100 -25.67052 -24.68113 -23.74602 -22.40630 -21.44482 -21.15149 -20.32756 -19.91947 -18.62940 -17.76995 -17.69215 -16.98711 -16.78512 -16.57176 -16.41612 -15.96790 -15.76644 -15.66664 -15.48928 -15.08632 -14.92794 -14.89593 -14.71382 -14.40943 -14.11964 -14.09900 -13.83879 -13.75862 -13.40126 -13.32678 -13.06399 -13.03878 -12.92091 -12.79928 -12.68600 -12.39920 -12.24187 -12.13450 -12.09500 -11.97582 -11.56150 -11.49591 -11.37747 -11.30663 -10.97034 -10.51325 -10.38855 -10.22680 -9.68133 -9.19533 -8.39710 -6.00071 1.31075 1.36040 1.44996 1.47905 1.74959 1.99189 2.23846 2.75653 2.88963 3.17186 3.41677 3.44187 3.74273 3.82289 3.89850 3.98639 4.06470 4.16581 4.18349 4.32357 4.38156 4.43803 4.44931 4.46472 4.49841 4.52595 4.57707 4.61134 4.64360 4.69726 4.77212 4.84346 4.86823 4.91747 4.98527 5.04201 5.09802 5.14954 5.20564 5.34927 5.37669 5.52215 5.56585 5.63928 5.94837 6.04000 6.15102 6.35037 6.48564 6.62034 6.90626 7.08679 7.42698 7.99292 8.77824 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.002125 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.042484 B =13175.143051 C =14158.608036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.070 3.930 4 H 0.110 0.890 5 C -0.170 4.170 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.603 5.603 9 C 0.098 3.902 10 C -0.118 4.118 11 C -0.067 4.067 12 C 0.091 3.909 13 H 0.080 0.920 14 C -0.183 4.183 15 N -0.672 5.672 16 C 0.063 3.937 17 C 0.450 3.550 18 O -0.611 6.611 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.231 1.231 28 C -0.119 4.119 29 C 0.110 3.890 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.344 0.656 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.060 0.940 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -25.007 -6.396 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.009 3.991 4 H 0.128 0.872 5 C -0.228 4.228 6 C 0.299 3.701 7 O -0.456 6.456 8 N -0.337 5.337 9 C -0.024 4.024 10 C -0.156 4.156 11 C -0.086 4.086 12 C -0.019 4.019 13 H 0.099 0.901 14 C -0.241 4.241 15 N -0.304 5.304 16 C -0.069 4.069 17 C 0.238 3.762 18 O -0.495 6.495 19 N -0.235 5.235 20 C -0.455 4.455 21 H 0.075 0.925 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.155 1.155 28 C -0.158 4.158 29 C -0.012 4.012 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.163 0.837 45 H 0.127 0.873 46 H 0.090 0.910 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.112 0.888 51 H 0.093 0.907 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.618 -25.507 -6.506 26.453 hybrid contribution 1.192 0.906 0.318 1.531 sum -1.426 -24.601 -6.188 25.407 Atomic orbital electron populations 1.23104 0.78627 1.04247 1.01483 1.88001 1.21934 1.26390 1.95203 1.22070 0.92510 0.86815 0.97735 0.87232 1.22312 1.04319 1.02390 0.93739 1.20934 0.87404 0.83432 0.78369 1.90664 1.66035 1.31246 1.57618 1.48197 1.25516 1.05985 1.53972 1.22239 0.96756 0.81897 1.01503 1.21866 0.95268 1.00228 0.98234 1.21020 0.94601 0.93800 0.99216 1.21641 0.92707 0.88348 0.99168 0.90131 1.22540 0.98196 1.03180 1.00209 1.60162 1.57928 1.03581 1.08718 1.21625 0.96820 0.90673 0.97805 1.21010 0.85152 0.88036 0.81959 1.90540 1.33743 1.77571 1.47695 1.42067 1.35349 1.14038 1.32095 1.18999 1.18555 0.90890 1.17044 0.92546 1.26100 1.01249 0.95047 0.99110 1.69800 1.44039 1.09075 1.34653 0.85384 0.78020 0.80431 0.77812 1.18280 1.20185 1.15455 1.21953 0.98259 0.94178 1.01389 1.21674 0.83665 1.01151 0.94724 0.92703 0.88478 0.92048 0.89272 0.89231 0.92750 0.89807 0.88088 0.92206 0.90000 0.90782 0.92346 0.93045 0.90211 0.83715 0.87254 0.91048 0.77604 0.91227 0.92143 0.88813 0.90735 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -8.40 9.93 -130.42 -1.29 -9.70 16 3 C 0.07 1.19 2.28 29.85 0.07 1.26 16 4 H 0.11 1.25 6.92 -2.39 -0.02 1.24 16 5 C -0.17 -2.36 9.17 71.98 0.66 -1.70 16 6 C 0.51 11.68 7.00 87.66 0.61 12.29 16 7 O -0.58 -18.56 15.99 15.54 0.25 -18.32 16 8 N -0.60 -10.60 2.97 -818.07 -2.43 -13.03 16 9 C 0.10 1.32 5.72 86.51 0.49 1.82 16 10 C -0.12 -1.92 5.24 30.82 0.16 -1.76 16 11 C -0.07 -1.02 1.92 -10.77 -0.02 -1.05 16 12 C 0.09 1.56 2.17 44.92 0.10 1.66 16 13 H 0.08 1.35 7.80 -2.38 -0.02 1.33 16 14 C -0.18 -2.67 8.81 71.98 0.63 -2.04 16 15 N -0.67 -16.83 5.08 -495.59 -2.52 -19.35 16 16 C 0.06 1.76 5.97 85.56 0.51 2.27 16 17 C 0.45 19.28 7.82 87.66 0.69 19.96 16 18 O -0.61 -32.26 15.78 -3.05 -0.05 -32.30 16 19 N -0.59 -27.07 5.09 -306.99 -1.56 -28.63 16 20 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16 21 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 23 N -0.93 -55.71 13.96 21.66 0.30 -55.41 16 24 Si 0.96 38.09 27.74 68.60 1.90 39.99 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 28 C -0.12 -1.62 5.04 30.67 0.15 -1.47 16 29 C 0.11 1.79 6.44 86.36 0.56 2.35 16 30 H 0.05 0.51 8.09 -2.38 -0.02 0.49 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.51 7.84 -2.39 -0.02 0.49 16 33 H 0.09 1.04 6.07 -2.39 -0.01 1.03 16 34 H 0.09 0.92 7.84 -2.39 -0.02 0.90 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.06 4.34 -2.38 -0.01 1.05 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.70 7.56 -2.39 -0.02 1.68 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 42 H 0.05 0.81 7.46 -2.39 -0.02 0.79 16 43 H 0.08 0.91 6.40 -2.39 -0.02 0.90 16 44 H 0.34 9.51 8.18 -89.69 -0.73 8.77 16 45 H 0.11 2.60 8.06 -2.39 -0.02 2.58 16 46 H 0.07 1.65 7.44 -2.39 -0.02 1.63 16 47 H 0.39 14.67 5.76 -92.71 -0.53 14.13 16 48 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.09 1.00 6.36 -2.39 -0.02 0.99 16 51 H 0.07 1.50 7.00 -2.39 -0.02 1.48 16 52 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -81.90 405.23 1.38 -80.52 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -0.39 Total: 39.40 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 7.16 Total: 16.81 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -6.20 Total: -116.41 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -1.09 Total: -60.32 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -81.90 1.38 -80.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691644026.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.295 kcal (2) G-P(sol) polarization free energy of solvation -81.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds