Wall clock time and date at job start Wed Apr 1 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 113.99966 * 2 1 4 4 H 1.08996 * 109.46641 * 30.00814 * 3 2 1 5 5 C 1.52997 * 109.47264 * 270.00126 * 3 2 1 6 6 C 1.50708 * 109.46840 * 150.00189 * 3 2 1 7 7 O 1.21273 * 120.00049 * 5.00197 * 6 3 2 8 8 N 1.34770 * 119.99686 * 185.00158 * 6 3 2 9 9 C 1.46928 * 120.63447 * 359.72131 * 8 6 3 10 10 C 1.53624 * 108.54781 * 126.36533 * 9 8 6 11 11 C 1.53041 * 109.23667 * 54.85849 * 10 9 8 12 12 C 1.53004 * 109.45816 * 178.49308 * 11 10 9 13 13 H 1.08998 * 109.47083 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47378 * 60.06586 * 12 11 10 15 15 N 1.46904 * 109.46957 * 300.06411 * 12 11 10 16 16 C 1.46896 * 111.00138 * 204.99773 * 15 12 11 17 17 C 1.50701 * 109.47125 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99795 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99962 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00275 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99770 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00342 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99976 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00142 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46882 * 60.00237 * 24 22 20 26 26 H 1.48497 * 109.46958 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46709 * 300.00288 * 24 22 20 28 28 C 1.53042 * 109.54139 * 298.51008 * 11 10 9 29 29 C 1.46925 * 120.63171 * 180.02562 * 8 6 3 30 30 H 1.09003 * 109.47426 * 299.99475 * 1 2 3 31 31 H 1.08994 * 109.47765 * 59.99757 * 1 2 3 32 32 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00108 * 5 3 2 35 35 H 1.09004 * 109.47261 * 300.00089 * 5 3 2 36 36 H 1.08999 * 109.58988 * 246.20696 * 9 8 6 37 37 H 1.09002 * 109.58536 * 6.62720 * 9 8 6 38 38 H 1.08999 * 109.63657 * 294.87169 * 10 9 8 39 39 H 1.08999 * 109.45741 * 174.74013 * 10 9 8 40 40 H 1.08998 * 109.46334 * 58.53619 * 11 10 9 41 41 H 1.08998 * 109.47291 * 300.00213 * 14 12 11 42 42 H 1.09009 * 109.47060 * 60.00169 * 14 12 11 43 43 H 1.08998 * 109.47282 * 179.97438 * 14 12 11 44 44 H 1.00905 * 110.99653 * 81.05040 * 15 12 11 45 45 H 1.08996 * 109.47416 * 300.00408 * 16 15 12 46 46 H 1.08999 * 109.46617 * 60.00587 * 16 15 12 47 47 H 0.97003 * 120.00168 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00145 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.49606 * 301.41879 * 28 11 10 50 50 H 1.08996 * 109.49968 * 181.31610 * 28 11 10 51 51 H 1.09000 * 109.58576 * 353.37365 * 29 8 6 52 52 H 1.08997 * 109.58687 * 113.65562 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0913 8 7 4.0254 2.4039 0.9224 9 6 3.4949 3.6942 0.4615 10 6 3.4645 4.6637 1.6527 11 6 4.8613 4.7443 2.2730 12 6 4.8456 5.7374 3.4369 13 1 5.8404 5.7953 3.8785 14 6 3.8454 5.2674 4.4949 15 7 4.4499 7.0634 2.9438 16 6 4.9689 8.1257 3.8156 17 6 4.5432 9.4683 3.2796 18 8 3.8738 9.5337 2.2702 19 7 4.9073 10.5963 3.9211 20 6 4.5205 11.8177 3.4332 21 1 3.9245 11.8760 2.5345 22 6 4.8954 12.9806 4.0948 23 7 5.6211 12.9096 5.1881 24 14 4.3678 14.6448 3.4304 25 1 2.8849 14.7154 3.3931 26 1 4.8930 15.7186 4.3114 27 1 4.9065 14.8232 2.0581 28 6 5.2736 3.3630 2.7870 29 6 5.3220 2.3794 1.6130 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 2.6605 2.7674 -1.4424 34 1 1.2567 1.8015 -1.9562 35 1 2.8828 1.0775 -1.9564 36 1 4.1375 4.0945 -0.3227 37 1 2.4851 3.5569 0.0746 38 1 2.7553 4.3052 2.3988 39 1 3.1617 5.6526 1.3085 40 1 5.5744 5.0793 1.5198 41 1 2.8504 5.2089 4.0538 42 1 4.1390 4.2834 4.8608 43 1 3.8346 5.9746 5.3243 44 1 3.4474 7.1301 2.8502 45 1 4.5732 7.9950 4.8228 46 1 6.0573 8.0736 3.8432 47 1 5.4430 10.5439 4.7281 48 1 5.8825 13.7214 5.6502 49 1 4.5473 3.0168 3.5223 50 1 6.2586 3.4261 3.2495 51 1 5.5183 1.3743 1.9861 52 1 6.1106 2.6724 0.9200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691644027.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:32 Heat of formation + Delta-G solvation = -116.334671 kcal Electronic energy + Delta-G solvation = -30470.222277 eV Core-core repulsion = 26276.789457 eV Total energy + Delta-G solvation = -4193.432820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79625 -39.05128 -38.20513 -37.60836 -36.02912 -34.00352 -33.33067 -32.03719 -31.21599 -30.86338 -29.47104 -27.22745 -26.53040 -25.95468 -24.43152 -23.71260 -23.53651 -21.86478 -20.15636 -19.33415 -18.96523 -17.93336 -17.70420 -17.00634 -16.34252 -16.15843 -15.61420 -15.46283 -15.12817 -14.97045 -14.79314 -14.67410 -14.48798 -14.10738 -13.88905 -13.81513 -13.55793 -13.39771 -13.35536 -13.06243 -12.68322 -12.41353 -12.38671 -12.22435 -12.17350 -12.06226 -11.74646 -11.59483 -11.56477 -11.51144 -11.13962 -11.04686 -10.85242 -10.57936 -10.46216 -10.39644 -10.26684 -10.22393 -9.72523 -9.51830 -8.91634 -8.46698 -8.05153 -7.97198 -6.43405 -3.84391 2.33739 2.45106 3.18358 3.24268 3.28405 3.49107 3.89318 4.05557 4.10845 4.27094 4.39032 4.50010 4.56036 4.64090 4.79667 4.86492 4.88977 4.93556 4.96891 5.04839 5.10652 5.14259 5.21553 5.22771 5.26063 5.29125 5.29524 5.36916 5.38030 5.55109 5.64104 5.66386 5.69691 5.73830 5.80337 5.87145 5.88171 6.01780 6.02934 6.09362 6.25510 6.30262 6.35810 6.63584 7.10427 7.23696 7.53075 7.66046 7.91509 8.04328 8.59414 9.15946 9.52657 10.03979 10.74194 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.001882 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.680176 B =14877.120568 C =15571.041526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.070 3.930 4 H 0.087 0.913 5 C -0.179 4.179 6 C 0.517 3.483 7 O -0.525 6.525 8 N -0.607 5.607 9 C 0.100 3.900 10 C -0.133 4.133 11 C -0.072 4.072 12 C 0.088 3.912 13 H 0.077 0.923 14 C -0.188 4.188 15 N -0.662 5.662 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.585 6.585 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.131 4.131 29 C 0.114 3.886 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 -22.048 -6.135 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.237 4.237 6 C 0.304 3.696 7 O -0.400 6.400 8 N -0.343 5.343 9 C -0.023 4.023 10 C -0.171 4.171 11 C -0.092 4.092 12 C -0.023 4.023 13 H 0.095 0.905 14 C -0.247 4.247 15 N -0.294 5.294 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.170 4.170 29 C -0.008 4.008 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.168 0.832 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.109 0.891 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.757 -22.533 -6.933 24.051 hybrid contribution -0.698 1.163 1.110 1.752 sum -5.455 -21.371 -5.824 22.812 Atomic orbital electron populations 1.22891 0.80526 1.03294 1.00142 1.88041 1.19724 1.25162 1.94954 1.21922 0.93603 0.86782 0.96864 0.89574 1.22429 1.03681 1.02702 0.94875 1.20357 0.86127 0.83703 0.79453 1.90701 1.69293 1.29492 1.50549 1.48072 1.21470 1.06641 1.58103 1.22139 0.99742 0.82998 0.97411 1.22112 0.97826 1.00046 0.97116 1.21089 0.97226 0.93228 0.97618 1.21565 0.98636 0.89012 0.93042 0.90466 1.22634 1.00381 1.01750 0.99887 1.60199 1.18921 1.00176 1.50065 1.21694 1.00728 0.91447 0.94350 1.19832 0.85701 0.85104 0.86758 1.90511 1.42949 1.86944 1.26484 1.41866 1.47553 1.04934 1.25677 1.19645 1.31122 0.81954 1.10236 0.87991 1.25264 0.96821 0.99962 0.95912 1.69603 1.37039 1.29984 1.17683 0.85917 0.78954 0.80728 0.78607 1.19933 1.20986 1.19880 1.22056 1.02437 0.94876 0.97620 1.21617 0.83872 1.01244 0.94092 0.93775 0.93732 0.89101 0.90038 0.91086 0.91031 0.90540 0.89602 0.91604 0.89133 0.90026 0.92247 0.92052 0.92720 0.83185 0.93978 0.89705 0.77477 0.91819 0.91246 0.90540 0.89106 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.88 9.89 -55.09 -0.54 -4.42 16 3 C 0.07 0.62 2.30 -27.88 -0.06 0.55 16 4 H 0.09 0.59 7.09 -51.93 -0.37 0.22 16 5 C -0.18 -1.21 9.10 37.16 0.34 -0.87 16 6 C 0.52 5.94 7.12 -10.98 -0.08 5.86 16 7 O -0.53 -8.22 15.92 -14.30 -0.23 -8.45 16 8 N -0.61 -5.65 2.97 -172.48 -0.51 -6.16 16 9 C 0.10 0.74 5.00 -3.49 -0.02 0.73 16 10 C -0.13 -1.15 4.74 -26.39 -0.13 -1.27 16 11 C -0.07 -0.67 2.17 -90.58 -0.20 -0.87 16 12 C 0.09 0.96 2.42 -67.71 -0.16 0.79 16 13 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 14 C -0.19 -1.86 8.46 37.15 0.31 -1.55 16 15 N -0.66 -9.66 5.38 -107.99 -0.58 -10.24 16 16 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 17 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 18 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 19 N -0.56 -14.05 5.29 -10.97 -0.06 -14.10 16 20 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C -0.13 -1.09 4.97 -26.59 -0.13 -1.22 16 29 C 0.11 1.03 6.43 -3.69 -0.02 1.00 16 30 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.45 5.39 -51.93 -0.28 0.17 16 34 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.50 4.65 -51.93 -0.24 0.26 16 38 H 0.07 0.57 6.51 -51.93 -0.34 0.23 16 39 H 0.09 0.90 7.14 -51.93 -0.37 0.53 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.58 6.45 -51.93 -0.33 0.24 16 42 H 0.06 0.54 6.46 -51.92 -0.34 0.21 16 43 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 44 H 0.35 5.29 7.39 -39.29 -0.29 5.00 16 45 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 46 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 49 H 0.07 0.62 6.51 -51.93 -0.34 0.28 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.09 0.94 7.01 -51.93 -0.36 0.58 16 52 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -33.85 403.02 -7.94 -41.79 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.46 Total: 11.24 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 0.59 Total: 7.35 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.43 Total: -54.08 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.68 Total: -28.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.85 -7.94 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691644027.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.546 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds