Wall clock time and date at job start Wed Apr 1 2020 01:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 113.99966 * 2 1 4 4 H 1.08996 * 109.46641 * 30.00814 * 3 2 1 5 5 C 1.52997 * 109.47264 * 270.00126 * 3 2 1 6 6 C 1.50708 * 109.46840 * 150.00189 * 3 2 1 7 7 O 1.21273 * 120.00049 * 5.00197 * 6 3 2 8 8 N 1.34770 * 119.99686 * 185.00158 * 6 3 2 9 9 C 1.46928 * 120.63447 * 359.72131 * 8 6 3 10 10 C 1.53624 * 108.54781 * 126.36533 * 9 8 6 11 11 C 1.53041 * 109.23667 * 54.85849 * 10 9 8 12 12 C 1.53004 * 109.45816 * 178.49308 * 11 10 9 13 13 H 1.08998 * 109.47083 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47378 * 60.06586 * 12 11 10 15 15 N 1.46904 * 109.46957 * 300.06411 * 12 11 10 16 16 C 1.46896 * 111.00138 * 204.99773 * 15 12 11 17 17 C 1.50701 * 109.47125 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99795 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99962 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00275 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99770 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00342 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99976 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00142 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46882 * 60.00237 * 24 22 20 26 26 H 1.48497 * 109.46958 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46709 * 300.00288 * 24 22 20 28 28 C 1.53042 * 109.54139 * 298.51008 * 11 10 9 29 29 C 1.46925 * 120.63171 * 180.02562 * 8 6 3 30 30 H 1.09003 * 109.47426 * 299.99475 * 1 2 3 31 31 H 1.08994 * 109.47765 * 59.99757 * 1 2 3 32 32 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00108 * 5 3 2 35 35 H 1.09004 * 109.47261 * 300.00089 * 5 3 2 36 36 H 1.08999 * 109.58988 * 246.20696 * 9 8 6 37 37 H 1.09002 * 109.58536 * 6.62720 * 9 8 6 38 38 H 1.08999 * 109.63657 * 294.87169 * 10 9 8 39 39 H 1.08999 * 109.45741 * 174.74013 * 10 9 8 40 40 H 1.08998 * 109.46334 * 58.53619 * 11 10 9 41 41 H 1.08998 * 109.47291 * 300.00213 * 14 12 11 42 42 H 1.09009 * 109.47060 * 60.00169 * 14 12 11 43 43 H 1.08998 * 109.47282 * 179.97438 * 14 12 11 44 44 H 1.00905 * 110.99653 * 81.05040 * 15 12 11 45 45 H 1.08996 * 109.47416 * 300.00408 * 16 15 12 46 46 H 1.08999 * 109.46617 * 60.00587 * 16 15 12 47 47 H 0.97003 * 120.00168 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00145 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.49606 * 301.41879 * 28 11 10 50 50 H 1.08996 * 109.49968 * 181.31610 * 28 11 10 51 51 H 1.09000 * 109.58576 * 353.37365 * 29 8 6 52 52 H 1.08997 * 109.58687 * 113.65562 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0913 8 7 4.0254 2.4039 0.9224 9 6 3.4949 3.6942 0.4615 10 6 3.4645 4.6637 1.6527 11 6 4.8613 4.7443 2.2730 12 6 4.8456 5.7374 3.4369 13 1 5.8404 5.7953 3.8785 14 6 3.8454 5.2674 4.4949 15 7 4.4499 7.0634 2.9438 16 6 4.9689 8.1257 3.8156 17 6 4.5432 9.4683 3.2796 18 8 3.8738 9.5337 2.2702 19 7 4.9073 10.5963 3.9211 20 6 4.5205 11.8177 3.4332 21 1 3.9245 11.8760 2.5345 22 6 4.8954 12.9806 4.0948 23 7 5.6211 12.9096 5.1881 24 14 4.3678 14.6448 3.4304 25 1 2.8849 14.7154 3.3931 26 1 4.8930 15.7186 4.3114 27 1 4.9065 14.8232 2.0581 28 6 5.2736 3.3630 2.7870 29 6 5.3220 2.3794 1.6130 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 2.6605 2.7674 -1.4424 34 1 1.2567 1.8015 -1.9562 35 1 2.8828 1.0775 -1.9564 36 1 4.1375 4.0945 -0.3227 37 1 2.4851 3.5569 0.0746 38 1 2.7553 4.3052 2.3988 39 1 3.1617 5.6526 1.3085 40 1 5.5744 5.0793 1.5198 41 1 2.8504 5.2089 4.0538 42 1 4.1390 4.2834 4.8608 43 1 3.8346 5.9746 5.3243 44 1 3.4474 7.1301 2.8502 45 1 4.5732 7.9950 4.8228 46 1 6.0573 8.0736 3.8432 47 1 5.4430 10.5439 4.7281 48 1 5.8825 13.7214 5.6502 49 1 4.5473 3.0168 3.5223 50 1 6.2586 3.4261 3.2495 51 1 5.5183 1.3743 1.9861 52 1 6.1106 2.6724 0.9200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691644027.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:31 Heat of formation + Delta-G solvation = -140.490981 kcal Electronic energy + Delta-G solvation = -30471.269773 eV Core-core repulsion = 26276.789457 eV Total energy + Delta-G solvation = -4194.480316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58250 -40.27134 -39.51272 -38.47678 -37.06282 -35.91174 -34.28720 -33.25601 -32.78695 -31.53854 -30.43150 -27.96814 -27.75436 -26.84764 -25.83256 -24.64347 -24.30147 -22.67496 -21.11494 -20.91786 -19.91336 -19.75157 -18.47239 -17.77966 -17.68874 -17.08348 -16.85575 -16.35743 -16.29475 -16.05055 -15.93001 -15.67880 -15.57225 -15.41044 -14.99634 -14.77267 -14.66711 -14.29635 -14.07742 -13.87606 -13.79465 -13.53519 -13.34543 -13.29459 -13.16040 -12.95977 -12.78507 -12.76285 -12.71440 -12.53881 -12.41574 -12.14363 -12.11542 -11.86330 -11.70047 -11.47991 -11.35227 -11.17431 -10.93628 -10.50282 -10.30427 -9.99614 -9.69873 -9.21744 -8.44914 -5.93551 1.41022 1.42890 1.50026 1.53665 1.74609 2.08145 2.30343 2.87995 2.95648 3.22637 3.41976 3.55720 3.74140 3.85481 3.88186 3.98766 4.06189 4.13384 4.21873 4.32529 4.37354 4.41958 4.44198 4.49183 4.50820 4.52741 4.59929 4.63577 4.66989 4.67450 4.75590 4.84193 4.84915 4.93069 4.94550 5.03055 5.12257 5.13588 5.19182 5.26414 5.29827 5.42323 5.56718 5.59103 5.94461 6.04462 6.17507 6.35539 6.50361 6.62087 7.09427 7.14396 7.58887 8.13796 8.72154 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.001882 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.680176 B =14877.120568 C =15571.041526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.069 3.931 4 H 0.109 0.891 5 C -0.174 4.174 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.601 5.601 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.067 4.067 12 C 0.090 3.910 13 H 0.081 0.919 14 C -0.182 4.182 15 N -0.670 5.670 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.621 6.621 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.120 4.120 29 C 0.111 3.889 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.344 0.656 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -21.793 -6.291 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.008 3.992 4 H 0.127 0.873 5 C -0.231 4.231 6 C 0.298 3.702 7 O -0.457 6.457 8 N -0.335 5.335 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.086 4.086 12 C -0.019 4.019 13 H 0.100 0.900 14 C -0.241 4.241 15 N -0.302 5.302 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.507 6.507 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.159 4.159 29 C -0.011 4.011 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.164 0.836 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.093 0.907 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.248 -22.269 -7.078 23.949 hybrid contribution -0.543 1.032 1.150 1.638 sum -5.791 -21.237 -5.928 22.796 Atomic orbital electron populations 1.23087 0.78680 1.04206 1.01427 1.87998 1.21885 1.26425 1.95198 1.22058 0.92414 0.86803 0.97935 0.87306 1.22416 1.04500 1.02793 0.93405 1.20964 0.86998 0.83332 0.78946 1.90669 1.70724 1.31353 1.52917 1.48151 1.21235 1.06842 1.57252 1.22280 1.01125 0.81682 0.97112 1.22053 0.97377 0.99733 0.97559 1.21021 0.97542 0.93175 0.96880 1.21633 0.99014 0.87368 0.93920 0.90037 1.22569 1.00156 1.02195 0.99182 1.60211 1.18641 1.01217 1.50160 1.21542 1.01639 0.88435 0.95112 1.20908 0.84016 0.86677 0.85783 1.90480 1.44266 1.87875 1.28095 1.41951 1.48172 1.05006 1.26107 1.19629 1.32418 0.83762 1.10426 0.90208 1.26041 0.96470 1.02907 0.96003 1.69668 1.37260 1.31072 1.18212 0.84993 0.78600 0.76673 0.78106 1.19632 1.19677 1.19720 1.21959 1.03023 0.93773 0.97120 1.21651 0.84213 1.00601 0.94658 0.92978 0.91853 0.88555 0.88675 0.89221 0.92584 0.89660 0.87552 0.91340 0.90161 0.90751 0.92083 0.90707 0.93457 0.83650 0.92062 0.88106 0.77074 0.91374 0.91534 0.89353 0.90700 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.40 -8.27 9.89 -129.99 -1.29 -9.55 16 3 C 0.07 1.13 2.30 29.85 0.07 1.20 16 4 H 0.11 1.23 7.09 -2.39 -0.02 1.21 16 5 C -0.17 -2.02 9.10 71.98 0.65 -1.36 16 6 C 0.51 11.49 7.12 87.66 0.62 12.11 16 7 O -0.58 -18.58 15.92 15.98 0.25 -18.32 16 8 N -0.60 -10.48 2.97 -817.99 -2.43 -12.90 16 9 C 0.10 1.28 5.00 86.51 0.43 1.71 16 10 C -0.13 -1.99 4.74 30.82 0.15 -1.84 16 11 C -0.07 -1.12 2.17 -10.76 -0.02 -1.15 16 12 C 0.09 1.78 2.42 44.91 0.11 1.89 16 13 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 14 C -0.18 -3.23 8.46 71.98 0.61 -2.62 16 15 N -0.67 -18.63 5.38 -495.59 -2.67 -21.30 16 16 C 0.07 2.10 5.97 85.56 0.51 2.61 16 17 C 0.44 20.11 7.82 87.66 0.69 20.79 16 18 O -0.62 -33.00 15.78 -3.06 -0.05 -33.05 16 19 N -0.58 -28.90 5.29 -306.99 -1.62 -30.52 16 20 C -0.33 -18.59 9.68 84.04 0.81 -17.77 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 23 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 24 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 C -0.12 -1.79 4.97 30.69 0.15 -1.63 16 29 C 0.11 1.90 6.43 86.38 0.56 2.45 16 30 H 0.05 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.81 5.39 -2.39 -0.01 0.80 16 34 H 0.09 0.72 7.87 -2.39 -0.02 0.70 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 0.94 4.65 -2.39 -0.01 0.93 16 38 H 0.07 1.03 6.51 -2.39 -0.02 1.02 16 39 H 0.08 1.46 7.14 -2.39 -0.02 1.45 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.07 6.45 -2.39 -0.02 1.05 16 42 H 0.07 1.14 6.46 -2.38 -0.02 1.12 16 43 H 0.05 0.91 7.45 -2.39 -0.02 0.90 16 44 H 0.34 10.10 7.39 -89.69 -0.66 9.44 16 45 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 46 H 0.10 2.96 8.06 -2.39 -0.02 2.94 16 47 H 0.40 18.95 7.90 -92.71 -0.73 18.21 16 48 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 49 H 0.07 1.05 6.51 -2.38 -0.02 1.04 16 50 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.07 1.56 7.01 -2.39 -0.02 1.55 16 52 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -74.58 403.02 1.10 -73.49 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.45 Total: 39.20 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 7.03 Total: 17.57 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -6.43 Total: -113.66 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -1.08 Total: -60.93 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -74.58 1.10 -73.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691644027.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.004 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds