Wall clock time and date at job start Wed Apr 1 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00416 * 2 1 4 4 H 1.09000 * 109.47107 * 330.00300 * 3 2 1 5 5 C 1.53006 * 109.46782 * 90.00030 * 3 2 1 6 6 C 1.50699 * 109.47438 * 209.99898 * 3 2 1 7 7 O 1.21280 * 119.99808 * 355.00628 * 6 3 2 8 8 N 1.34772 * 119.99949 * 174.99577 * 6 3 2 9 9 C 1.46923 * 120.63343 * 0.03442 * 8 6 3 10 10 C 1.53195 * 108.77575 * 233.58368 * 9 8 6 11 11 C 1.53046 * 109.30793 * 305.36150 * 10 9 8 12 12 C 1.53000 * 109.45801 * 181.38429 * 11 10 9 13 13 H 1.09001 * 109.47120 * 59.99577 * 12 11 10 14 14 C 1.53003 * 109.47085 * 300.00102 * 12 11 10 15 15 N 1.46895 * 109.47223 * 179.97438 * 12 11 10 16 16 C 1.46902 * 111.00130 * 205.00075 * 15 12 11 17 17 C 1.50698 * 109.46714 * 180.02562 * 16 15 12 18 18 O 1.21284 * 120.00655 * 359.97438 * 17 16 15 19 19 N 1.34785 * 119.99529 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00600 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99966 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00288 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46968 * 60.00484 * 24 22 20 26 26 H 1.48496 * 109.47378 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47386 * 300.00595 * 24 22 20 28 28 C 1.53043 * 109.53700 * 61.36640 * 11 10 9 29 29 C 1.46931 * 120.62926 * 180.02562 * 8 6 3 30 30 H 1.08997 * 109.46668 * 299.99747 * 1 2 3 31 31 H 1.08999 * 109.46855 * 59.99361 * 1 2 3 32 32 H 1.08996 * 109.47167 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46821 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47033 * 300.00197 * 5 3 2 35 35 H 1.09000 * 109.47080 * 60.00252 * 5 3 2 36 36 H 1.08996 * 109.59375 * 113.79430 * 9 8 6 37 37 H 1.09006 * 109.58686 * 353.36430 * 9 8 6 38 38 H 1.08990 * 109.49959 * 185.41234 * 10 9 8 39 39 H 1.08999 * 109.49609 * 65.30943 * 10 9 8 40 40 H 1.08997 * 109.46079 * 301.34562 * 11 10 9 41 41 H 1.09001 * 109.46926 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.47071 * 299.99408 * 14 12 11 43 43 H 1.09001 * 109.47387 * 60.00100 * 14 12 11 44 44 H 1.00904 * 110.99771 * 81.04699 * 15 12 11 45 45 H 1.09001 * 109.47113 * 299.99786 * 16 15 12 46 46 H 1.08994 * 109.47104 * 59.99956 * 16 15 12 47 47 H 0.96992 * 120.00198 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00193 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.49738 * 58.58741 * 28 11 10 50 50 H 1.09003 * 109.49388 * 178.64855 * 28 11 10 51 51 H 1.09001 * 109.58511 * 6.62918 * 29 8 6 52 52 H 1.08996 * 109.70113 * 246.27382 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7712 1.4426 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9224 9 6 3.4925 3.6948 -0.4662 10 6 3.4647 4.6637 -1.6524 11 6 4.8615 4.7443 -2.2728 12 6 4.8458 5.7374 -3.4366 13 1 4.5533 6.7216 -3.0704 14 6 3.8442 5.2684 -4.4938 15 7 6.1865 5.8155 -4.0318 16 6 6.3892 7.1052 -4.7053 17 6 7.7720 7.1479 -5.3028 18 8 8.5157 6.1977 -5.1794 19 7 8.1828 8.2424 -5.9735 20 6 9.4410 8.2815 -6.5166 21 1 10.1029 7.4351 -6.4075 22 6 9.8643 9.4097 -7.2086 23 7 9.0588 10.4394 -7.3419 24 14 11.5783 9.4627 -7.9492 25 1 11.7262 8.3613 -8.9343 26 1 11.7836 10.7666 -8.6295 27 1 12.5882 9.3024 -6.8723 28 6 5.2737 3.3630 -2.7869 29 6 5.3216 2.3794 -1.6140 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 2.6616 2.7667 1.4426 34 1 1.2570 1.8013 1.9564 35 1 2.8830 1.0772 1.9564 36 1 4.1320 4.0972 0.3194 37 1 2.4814 3.5577 -0.0827 38 1 3.1623 5.6524 -1.3076 39 1 2.7555 4.3052 -2.3984 40 1 5.5747 5.0791 -1.5195 41 1 3.8334 5.9757 -5.3231 42 1 4.1367 4.2843 -4.8600 43 1 2.8495 5.2108 -4.0519 44 1 6.3456 5.0472 -4.6664 45 1 5.6483 7.2225 -5.4962 46 1 6.2802 7.9136 -3.9825 47 1 7.5883 9.0024 -6.0719 48 1 9.3544 11.2271 -7.8246 49 1 4.5473 3.0169 -3.5223 50 1 6.2584 3.4261 -3.2500 51 1 5.5174 1.3744 -1.9877 52 1 6.1122 2.6729 -0.9234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691644028.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:36 Heat of formation + Delta-G solvation = -115.837561 kcal Electronic energy + Delta-G solvation = -30387.481123 eV Core-core repulsion = 26194.069859 eV Total energy + Delta-G solvation = -4193.411263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80691 -39.06004 -38.20204 -37.61579 -36.05127 -33.97782 -33.22220 -32.23052 -31.21857 -30.79514 -29.48473 -27.27154 -26.53673 -25.91724 -24.41995 -24.05792 -23.14250 -21.97491 -20.17738 -19.30214 -18.95246 -17.91758 -17.72333 -17.04499 -16.35997 -16.13236 -15.62900 -15.47772 -15.11759 -14.94260 -14.84500 -14.67588 -14.46766 -14.08414 -13.97509 -13.77559 -13.57915 -13.42361 -13.31761 -13.10125 -12.72284 -12.45908 -12.37497 -12.25917 -12.17736 -12.05920 -11.67630 -11.58561 -11.54669 -11.51970 -11.16971 -11.02786 -10.85672 -10.66103 -10.44308 -10.34115 -10.27479 -10.20569 -9.72792 -9.49904 -8.91089 -8.44684 -8.03177 -7.95232 -6.41703 -3.82484 2.33840 2.44258 3.20248 3.25825 3.30377 3.45789 3.91291 4.04248 4.08345 4.25332 4.35340 4.49324 4.51153 4.62987 4.70136 4.83040 4.86025 4.92047 4.97787 5.06186 5.08466 5.13423 5.16481 5.23079 5.23949 5.24993 5.31072 5.33131 5.37837 5.53431 5.60533 5.65058 5.70281 5.75077 5.82585 5.86758 5.91019 6.02329 6.05665 6.09349 6.27880 6.34431 6.37542 6.60825 7.10944 7.25896 7.55044 7.67872 7.92292 8.06357 8.61474 9.17972 9.54524 10.06118 10.75952 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032511 B = 0.001756 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.041287 B =15938.302338 C =16264.283425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.085 0.915 5 C -0.179 4.179 6 C 0.515 3.485 7 O -0.522 6.522 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.134 4.134 11 C -0.073 4.073 12 C 0.089 3.911 13 H 0.077 0.923 14 C -0.188 4.188 15 N -0.662 5.662 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.130 4.130 29 C 0.113 3.887 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.349 0.651 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.800 -10.925 15.881 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.103 0.897 5 C -0.236 4.236 6 C 0.302 3.698 7 O -0.396 6.396 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.022 4.022 13 H 0.095 0.905 14 C -0.247 4.247 15 N -0.294 5.294 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.169 4.169 29 C -0.009 4.009 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.169 0.831 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.108 0.892 51 H 0.109 0.891 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.588 -11.934 16.229 28.098 hybrid contribution -0.398 0.941 -1.301 1.654 sum -19.986 -10.993 14.929 27.261 Atomic orbital electron populations 1.22891 0.80568 1.03343 1.00028 1.88057 1.19682 1.25125 1.94930 1.21920 0.93655 0.86787 0.96777 0.89703 1.22421 1.03590 1.02638 0.94976 1.20346 0.86100 0.83796 0.79591 1.90720 1.69173 1.29441 1.50296 1.48068 1.21636 1.06307 1.58278 1.21980 0.99595 0.83449 0.97138 1.22078 0.98323 0.99321 0.97551 1.21092 0.95854 0.94883 0.97371 1.21557 0.87926 0.98642 0.94069 0.90525 1.22638 1.00257 1.01877 0.99897 1.60189 1.25645 1.04081 1.39509 1.21692 0.96178 0.92900 0.97407 1.19840 0.88845 0.84744 0.83988 1.90520 1.56329 1.36746 1.63135 1.41862 1.15272 1.15217 1.47734 1.19658 0.90921 1.02276 1.30089 0.87982 1.25258 0.99851 0.95109 0.97710 1.69604 1.36626 1.05639 1.42509 0.85915 0.81822 0.77294 0.79174 1.19934 1.20993 1.19889 1.22001 1.03388 0.94136 0.97331 1.21660 0.83410 1.01566 0.94269 0.93805 0.93804 0.89069 0.90188 0.91159 0.90958 0.90725 0.89686 0.90431 0.91180 0.90023 0.92721 0.92141 0.92168 0.83053 0.93996 0.89727 0.77499 0.91850 0.91716 0.89207 0.89060 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.74 9.89 -55.09 -0.54 -4.28 16 3 C 0.07 0.58 2.30 -27.88 -0.06 0.52 16 4 H 0.09 0.50 7.08 -51.93 -0.37 0.13 16 5 C -0.18 -1.05 9.10 37.16 0.34 -0.71 16 6 C 0.52 5.91 7.12 -10.99 -0.08 5.83 16 7 O -0.52 -8.40 15.92 -14.30 -0.23 -8.62 16 8 N -0.61 -5.65 2.97 -172.79 -0.51 -6.16 16 9 C 0.10 0.62 4.97 -3.71 -0.02 0.60 16 10 C -0.13 -0.89 4.97 -26.61 -0.13 -1.03 16 11 C -0.07 -0.68 2.17 -90.57 -0.20 -0.87 16 12 C 0.09 0.96 2.42 -67.71 -0.16 0.80 16 13 H 0.08 0.81 7.80 -51.93 -0.40 0.40 16 14 C -0.19 -1.86 8.46 37.16 0.31 -1.55 16 15 N -0.66 -9.98 5.39 -107.99 -0.58 -10.56 16 16 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 17 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 18 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.13 -1.34 4.72 -26.63 -0.13 -1.46 16 29 C 0.11 1.17 6.43 -3.73 -0.02 1.14 16 30 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 31 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.34 5.41 -51.93 -0.28 0.06 16 34 H 0.07 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.35 4.66 -51.93 -0.24 0.11 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.49 6.51 -51.93 -0.34 0.15 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 42 H 0.06 0.63 6.45 -51.93 -0.33 0.29 16 43 H 0.06 0.49 6.46 -51.93 -0.34 0.16 16 44 H 0.35 5.59 7.39 -39.29 -0.29 5.30 16 45 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 46 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 50 H 0.09 1.07 7.14 -51.93 -0.37 0.70 16 51 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 52 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -34.60 403.00 -7.94 -42.55 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.47 Total: 11.03 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 0.59 Total: 7.55 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.43 Total: -54.72 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.68 Total: -28.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.60 -7.94 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691644028.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.291 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds