Wall clock time and date at job start Wed Apr 1 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00416 * 2 1 4 4 H 1.09000 * 109.47107 * 330.00300 * 3 2 1 5 5 C 1.53006 * 109.46782 * 90.00030 * 3 2 1 6 6 C 1.50699 * 109.47438 * 209.99898 * 3 2 1 7 7 O 1.21280 * 119.99808 * 355.00628 * 6 3 2 8 8 N 1.34772 * 119.99949 * 174.99577 * 6 3 2 9 9 C 1.46923 * 120.63343 * 0.03442 * 8 6 3 10 10 C 1.53195 * 108.77575 * 233.58368 * 9 8 6 11 11 C 1.53046 * 109.30793 * 305.36150 * 10 9 8 12 12 C 1.53000 * 109.45801 * 181.38429 * 11 10 9 13 13 H 1.09001 * 109.47120 * 59.99577 * 12 11 10 14 14 C 1.53003 * 109.47085 * 300.00102 * 12 11 10 15 15 N 1.46895 * 109.47223 * 179.97438 * 12 11 10 16 16 C 1.46902 * 111.00130 * 205.00075 * 15 12 11 17 17 C 1.50698 * 109.46714 * 180.02562 * 16 15 12 18 18 O 1.21284 * 120.00655 * 359.97438 * 17 16 15 19 19 N 1.34785 * 119.99529 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00600 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99966 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00288 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46968 * 60.00484 * 24 22 20 26 26 H 1.48496 * 109.47378 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47386 * 300.00595 * 24 22 20 28 28 C 1.53043 * 109.53700 * 61.36640 * 11 10 9 29 29 C 1.46931 * 120.62926 * 180.02562 * 8 6 3 30 30 H 1.08997 * 109.46668 * 299.99747 * 1 2 3 31 31 H 1.08999 * 109.46855 * 59.99361 * 1 2 3 32 32 H 1.08996 * 109.47167 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46821 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47033 * 300.00197 * 5 3 2 35 35 H 1.09000 * 109.47080 * 60.00252 * 5 3 2 36 36 H 1.08996 * 109.59375 * 113.79430 * 9 8 6 37 37 H 1.09006 * 109.58686 * 353.36430 * 9 8 6 38 38 H 1.08990 * 109.49959 * 185.41234 * 10 9 8 39 39 H 1.08999 * 109.49609 * 65.30943 * 10 9 8 40 40 H 1.08997 * 109.46079 * 301.34562 * 11 10 9 41 41 H 1.09001 * 109.46926 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.47071 * 299.99408 * 14 12 11 43 43 H 1.09001 * 109.47387 * 60.00100 * 14 12 11 44 44 H 1.00904 * 110.99771 * 81.04699 * 15 12 11 45 45 H 1.09001 * 109.47113 * 299.99786 * 16 15 12 46 46 H 1.08994 * 109.47104 * 59.99956 * 16 15 12 47 47 H 0.96992 * 120.00198 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00193 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.49738 * 58.58741 * 28 11 10 50 50 H 1.09003 * 109.49388 * 178.64855 * 28 11 10 51 51 H 1.09001 * 109.58511 * 6.62918 * 29 8 6 52 52 H 1.08996 * 109.70113 * 246.27382 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7712 1.4426 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9224 9 6 3.4925 3.6948 -0.4662 10 6 3.4647 4.6637 -1.6524 11 6 4.8615 4.7443 -2.2728 12 6 4.8458 5.7374 -3.4366 13 1 4.5533 6.7216 -3.0704 14 6 3.8442 5.2684 -4.4938 15 7 6.1865 5.8155 -4.0318 16 6 6.3892 7.1052 -4.7053 17 6 7.7720 7.1479 -5.3028 18 8 8.5157 6.1977 -5.1794 19 7 8.1828 8.2424 -5.9735 20 6 9.4410 8.2815 -6.5166 21 1 10.1029 7.4351 -6.4075 22 6 9.8643 9.4097 -7.2086 23 7 9.0588 10.4394 -7.3419 24 14 11.5783 9.4627 -7.9492 25 1 11.7262 8.3613 -8.9343 26 1 11.7836 10.7666 -8.6295 27 1 12.5882 9.3024 -6.8723 28 6 5.2737 3.3630 -2.7869 29 6 5.3216 2.3794 -1.6140 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 2.6616 2.7667 1.4426 34 1 1.2570 1.8013 1.9564 35 1 2.8830 1.0772 1.9564 36 1 4.1320 4.0972 0.3194 37 1 2.4814 3.5577 -0.0827 38 1 3.1623 5.6524 -1.3076 39 1 2.7555 4.3052 -2.3984 40 1 5.5747 5.0791 -1.5195 41 1 3.8334 5.9757 -5.3231 42 1 4.1367 4.2843 -4.8600 43 1 2.8495 5.2108 -4.0519 44 1 6.3456 5.0472 -4.6664 45 1 5.6483 7.2225 -5.4962 46 1 6.2802 7.9136 -3.9825 47 1 7.5883 9.0024 -6.0719 48 1 9.3544 11.2271 -7.8246 49 1 4.5473 3.0169 -3.5223 50 1 6.2584 3.4261 -3.2500 51 1 5.5174 1.3744 -1.9877 52 1 6.1122 2.6729 -0.9234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691644028.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:35 Heat of formation + Delta-G solvation = -141.331151 kcal Electronic energy + Delta-G solvation = -30388.586608 eV Core-core repulsion = 26194.069859 eV Total energy + Delta-G solvation = -4194.516748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57953 -40.28227 -39.51862 -38.46437 -37.08514 -35.93004 -34.20158 -33.26207 -32.94552 -31.46622 -30.44442 -27.97661 -27.73612 -26.84169 -25.75396 -24.98505 -23.94213 -22.76192 -21.12199 -20.91944 -19.92204 -19.73931 -18.46309 -17.76298 -17.72221 -17.03977 -16.89625 -16.38405 -16.25622 -16.07564 -15.91228 -15.68162 -15.55839 -15.43148 -14.99901 -14.79053 -14.61685 -14.30720 -14.05197 -13.95536 -13.77551 -13.53603 -13.32435 -13.28901 -13.12604 -13.00896 -12.83349 -12.74395 -12.66662 -12.51546 -12.43118 -12.12935 -12.10039 -11.85272 -11.69629 -11.49991 -11.42006 -11.08876 -10.94806 -10.49246 -10.32189 -10.00881 -9.69795 -9.21832 -8.46297 -5.94893 1.39704 1.41611 1.51545 1.52346 1.74677 2.06824 2.29454 2.90468 2.96381 3.21069 3.43327 3.54647 3.79215 3.85713 3.87188 3.95947 4.03256 4.18058 4.27553 4.31742 4.36344 4.40451 4.45275 4.48644 4.50057 4.54992 4.61478 4.64445 4.67632 4.71264 4.78541 4.84698 4.86382 4.92497 4.95683 5.02562 5.12620 5.16732 5.21063 5.24225 5.31182 5.41035 5.56886 5.59705 5.93937 6.06883 6.18857 6.39322 6.46378 6.61211 7.11215 7.13301 7.57437 8.13167 8.70762 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032511 B = 0.001756 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.041287 B =15938.302338 C =16264.283425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.071 3.929 4 H 0.116 0.884 5 C -0.173 4.173 6 C 0.505 3.495 7 O -0.583 6.583 8 N -0.601 5.601 9 C 0.095 3.905 10 C -0.127 4.127 11 C -0.068 4.068 12 C 0.090 3.910 13 H 0.091 0.909 14 C -0.182 4.182 15 N -0.676 5.676 16 C 0.067 3.933 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.122 4.122 29 C 0.114 3.886 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.340 0.660 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.211 -9.078 17.156 30.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.011 3.989 4 H 0.134 0.866 5 C -0.230 4.230 6 C 0.293 3.707 7 O -0.462 6.462 8 N -0.335 5.335 9 C -0.026 4.026 10 C -0.165 4.165 11 C -0.087 4.087 12 C -0.020 4.020 13 H 0.109 0.891 14 C -0.241 4.241 15 N -0.308 5.308 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.160 4.160 29 C -0.009 4.009 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.159 0.841 45 H 0.080 0.920 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.047 -10.027 17.527 29.896 hybrid contribution 0.330 0.334 -1.677 1.741 sum -21.717 -9.694 15.850 28.580 Atomic orbital electron populations 1.23092 0.78571 1.04135 1.01575 1.88013 1.22010 1.26657 1.95206 1.22069 0.91977 0.86858 0.98025 0.86648 1.22422 1.04562 1.02898 0.93142 1.21155 0.87230 0.83280 0.78985 1.90685 1.70844 1.31707 1.52988 1.48156 1.20792 1.07308 1.57210 1.22310 1.01452 0.81470 0.97344 1.22059 0.96043 1.00873 0.97566 1.21053 0.97775 0.93216 0.96629 1.21687 0.85910 0.99895 0.94460 0.89090 1.22574 1.01161 1.00993 0.99376 1.60221 1.28811 1.02751 1.38991 1.21545 0.92071 0.94658 0.98283 1.20986 0.90857 0.83279 0.82489 1.90489 1.58309 1.38027 1.64250 1.41932 1.14750 1.16063 1.48359 1.19625 0.92228 1.02383 1.32276 0.90455 1.26014 1.03373 0.94370 0.97425 1.69661 1.37955 1.05893 1.42503 0.85005 0.77337 0.77781 0.78313 1.19834 1.19399 1.19793 1.21873 1.02012 0.95114 0.96998 1.21512 0.84585 1.00152 0.94604 0.91538 0.92823 0.88884 0.88209 0.88884 0.93051 0.89298 0.86699 0.87782 0.90895 0.90781 0.93454 0.93151 0.89713 0.84078 0.91967 0.87679 0.76971 0.91304 0.92110 0.91565 0.91689 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.98 9.89 -129.99 -1.28 -9.26 16 3 C 0.07 1.04 2.30 29.85 0.07 1.11 16 4 H 0.12 0.92 7.08 -2.39 -0.02 0.90 16 5 C -0.17 -1.54 9.10 71.98 0.66 -0.89 16 6 C 0.50 11.46 7.12 87.66 0.62 12.09 16 7 O -0.58 -19.84 15.92 15.96 0.25 -19.58 16 8 N -0.60 -10.54 2.97 -818.99 -2.43 -12.97 16 9 C 0.10 0.83 4.97 86.36 0.43 1.26 16 10 C -0.13 -1.20 4.97 30.67 0.15 -1.05 16 11 C -0.07 -1.13 2.17 -10.76 -0.02 -1.15 16 12 C 0.09 1.75 2.42 44.92 0.11 1.86 16 13 H 0.09 1.57 7.80 -2.39 -0.02 1.56 16 14 C -0.18 -3.21 8.46 71.98 0.61 -2.60 16 15 N -0.68 -19.92 5.39 -495.58 -2.67 -22.59 16 16 C 0.07 2.20 5.97 85.56 0.51 2.71 16 17 C 0.44 20.62 7.82 87.66 0.69 21.30 16 18 O -0.62 -34.67 15.78 -3.04 -0.05 -34.72 16 19 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 20 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 24 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 C -0.12 -2.52 4.72 30.66 0.14 -2.38 16 29 C 0.11 2.44 6.43 86.35 0.56 3.00 16 30 H 0.07 0.35 7.87 -2.39 -0.02 0.33 16 31 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.46 5.41 -2.39 -0.01 0.44 16 34 H 0.09 0.43 7.87 -2.39 -0.02 0.41 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 0.37 4.66 -2.38 -0.01 0.36 16 38 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.70 6.51 -2.39 -0.02 0.69 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 0.91 7.45 -2.39 -0.02 0.89 16 42 H 0.05 0.99 6.45 -2.39 -0.02 0.98 16 43 H 0.08 1.08 6.46 -2.39 -0.02 1.07 16 44 H 0.34 11.09 7.39 -89.69 -0.66 10.43 16 45 H 0.06 1.82 7.44 -2.39 -0.02 1.80 16 46 H 0.11 3.06 8.05 -2.39 -0.02 3.04 16 47 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 49 H 0.06 1.30 6.51 -2.39 -0.02 1.28 16 50 H 0.07 1.68 7.14 -2.39 -0.02 1.67 16 51 H 0.06 1.74 7.01 -2.39 -0.02 1.72 16 52 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.53 403.00 1.08 -78.45 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.45 Total: 37.45 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.03 Total: 18.23 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -6.44 Total: -115.65 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -1.08 Total: -63.56 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -79.53 1.08 -78.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691644028.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.883 kcal (2) G-P(sol) polarization free energy of solvation -79.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds