Wall clock time and date at job start Wed Apr 1 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99699 * 2 1 4 4 C 1.50704 * 109.47255 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99731 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00158 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00307 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47642 * 179.97438 * 7 6 4 9 9 C 1.50692 * 109.47463 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00068 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.46927 * 120.62999 * 179.97438 * 11 9 8 13 13 C 1.53185 * 108.78148 * 233.63256 * 12 11 9 14 14 C 1.53039 * 109.31257 * 305.37199 * 13 12 11 15 15 C 1.53006 * 109.46170 * 181.38347 * 14 13 12 16 16 H 1.08998 * 109.46505 * 299.96731 * 15 14 13 17 17 C 1.52997 * 109.47127 * 59.96860 * 15 14 13 18 18 N 1.46500 * 109.47249 * 179.97438 * 15 14 13 19 19 C 1.36930 * 119.99841 * 154.99846 * 18 15 14 20 20 H 1.07999 * 120.00622 * 359.97438 * 19 18 15 21 21 C 1.38817 * 119.99916 * 179.97438 * 19 18 15 22 22 N 1.31620 * 119.99831 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47103 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47284 * 120.00414 * 23 21 19 26 26 H 1.48498 * 109.46983 * 240.00134 * 23 21 19 27 27 C 1.53043 * 109.52972 * 61.37047 * 14 13 12 28 28 C 1.46919 * 120.63108 * 0.02562 * 11 9 8 29 29 H 1.08998 * 109.46556 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47107 * 299.99453 * 1 2 3 31 31 H 1.09003 * 109.47127 * 60.00083 * 1 2 3 32 32 H 1.09004 * 109.46751 * 59.99952 * 3 2 1 33 33 H 1.08996 * 109.47601 * 300.00124 * 3 2 1 34 34 H 0.97002 * 119.99511 * 0.02562 * 6 4 3 35 35 H 1.09001 * 109.47142 * 59.99335 * 7 6 4 36 36 H 1.09001 * 109.47154 * 300.00431 * 7 6 4 37 37 H 1.09004 * 109.46830 * 59.99662 * 8 7 6 38 38 H 1.09006 * 109.46839 * 300.00300 * 8 7 6 39 39 H 1.09010 * 109.58200 * 113.84629 * 12 11 9 40 40 H 1.09003 * 109.58882 * 353.42880 * 12 11 9 41 41 H 1.08997 * 109.50024 * 185.41444 * 13 12 11 42 42 H 1.09003 * 109.49641 * 65.31533 * 13 12 11 43 43 H 1.09004 * 109.46034 * 301.35521 * 14 13 12 44 44 H 1.09002 * 109.47153 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.46832 * 60.00321 * 17 15 14 46 46 H 1.09004 * 109.47261 * 300.00303 * 17 15 14 47 47 H 0.97001 * 119.99547 * 334.99826 * 18 15 14 48 48 H 0.97006 * 120.00314 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.49864 * 58.57631 * 27 14 13 50 50 H 1.08999 * 109.49867 * 178.68274 * 27 14 13 51 51 H 1.08998 * 109.58707 * 246.15288 * 28 11 9 52 52 H 1.09000 * 109.58509 * 6.44117 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1867 0.0006 5 8 4.0341 0.0917 0.0006 6 7 4.2764 2.2970 0.0013 7 6 5.7368 2.1815 0.0013 8 6 6.3590 3.5792 0.0014 9 6 7.8613 3.4603 0.0021 10 8 8.3829 2.3654 0.0020 11 7 8.6252 4.5707 0.0018 12 6 10.0910 4.4709 0.0031 13 6 10.6406 5.2963 1.1706 14 6 10.1081 6.7277 1.0733 15 6 10.6824 7.5642 2.2186 16 1 10.3824 7.1293 3.1719 17 6 12.2094 7.5796 2.1229 18 7 10.1733 8.9347 2.1253 19 6 10.1046 9.7173 3.2468 20 1 10.4253 9.3242 4.2002 21 6 9.6227 11.0162 3.1584 22 7 9.2314 11.4952 1.9966 23 14 9.5297 12.0841 4.6881 24 1 10.0253 11.3164 5.8586 25 1 10.3682 13.2949 4.4984 26 1 8.1207 12.4898 4.9236 27 6 8.5808 6.7130 1.1689 28 6 8.0079 5.9039 0.0014 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8591 3.1727 0.0017 35 1 6.0585 1.6409 -0.8889 36 1 6.0584 1.6401 0.8910 37 1 6.0373 4.1200 0.8915 38 1 6.0373 4.1201 -0.8886 39 1 10.4845 4.8595 -0.9363 40 1 10.3862 3.4283 0.1217 41 1 11.7296 5.3093 1.1262 42 1 10.3197 4.8521 2.1129 43 1 10.4081 7.1628 0.1200 44 1 12.6185 8.1752 2.9391 45 1 12.5093 8.0145 1.1695 46 1 12.5881 6.5599 2.1923 47 1 9.8850 9.2877 1.2691 48 1 8.8943 12.4027 1.9348 49 1 8.2796 6.2553 2.1112 50 1 8.2035 7.7346 1.1231 51 1 8.2312 6.4096 -0.9380 52 1 6.9284 5.8068 0.1166 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691666773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:12 Heat of formation + Delta-G solvation = -113.534389 kcal Electronic energy + Delta-G solvation = -29743.097426 eV Core-core repulsion = 25549.786036 eV Total energy + Delta-G solvation = -4193.311390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48319 -39.95471 -38.13485 -37.79247 -35.55560 -35.36460 -33.04619 -31.96060 -30.88571 -30.72414 -29.10704 -28.25451 -26.45172 -25.45481 -24.32789 -23.36917 -22.64267 -21.21177 -20.97708 -19.72158 -18.98317 -17.73116 -17.59024 -17.13427 -16.84501 -16.79797 -16.13356 -15.88199 -15.44872 -15.11268 -14.88330 -14.79336 -14.18781 -13.99863 -13.90868 -13.89762 -13.48575 -13.36909 -13.31811 -12.85880 -12.64468 -12.60491 -12.40216 -12.09499 -12.04080 -11.92754 -11.78901 -11.62562 -11.20767 -11.03174 -10.91593 -10.76094 -10.33803 -10.28968 -10.28330 -10.20548 -10.17400 -9.89894 -9.76825 -9.62281 -9.44217 -8.95562 -8.64798 -6.99053 -5.81595 -3.09220 2.27669 2.33301 2.49067 2.96131 3.38710 3.45528 3.46882 3.63413 4.23102 4.44313 4.45453 4.54232 4.60784 4.65099 4.71693 4.82535 4.85221 4.89935 5.01396 5.04067 5.09663 5.18676 5.21553 5.34140 5.46864 5.50218 5.55127 5.63634 5.68998 5.75366 5.87945 5.90027 5.97563 6.00216 6.08115 6.17780 6.27605 6.38399 6.43538 6.48761 6.50634 6.62132 6.73818 6.90825 7.08287 7.09572 7.31752 7.67189 7.86907 8.04375 8.37533 9.48984 10.07013 10.41906 11.41108 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.001932 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.130517 B =14491.459529 C =16219.762994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.512 3.488 5 O -0.515 6.515 6 N -0.732 5.732 7 C 0.137 3.863 8 C -0.154 4.154 9 C 0.519 3.481 10 O -0.545 6.545 11 N -0.606 5.606 12 C 0.112 3.888 13 C -0.128 4.128 14 C -0.090 4.090 15 C 0.177 3.823 16 H 0.045 0.955 17 C -0.166 4.166 18 N -0.723 5.723 19 C -0.234 4.234 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.123 4.123 28 C 0.104 3.896 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.071 0.929 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -15.963 -7.220 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.297 3.703 5 O -0.389 6.389 6 N -0.386 5.386 7 C 0.013 3.987 8 C -0.194 4.194 9 C 0.307 3.693 10 O -0.423 6.423 11 N -0.340 5.340 12 C -0.010 4.010 13 C -0.167 4.167 14 C -0.109 4.109 15 C 0.068 3.932 16 H 0.063 0.937 17 C -0.226 4.226 18 N -0.364 5.364 19 C -0.365 4.365 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.161 4.161 28 C -0.018 4.018 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.235 0.765 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.216 0.784 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.111 0.889 51 H 0.089 0.911 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.266 -17.463 -7.040 22.472 hybrid contribution -0.532 1.860 0.582 2.020 sum -12.798 -15.603 -6.458 21.188 Atomic orbital electron populations 1.22856 0.80193 1.03452 1.00205 1.88027 1.19924 1.25111 1.95436 1.22238 0.91487 0.87163 1.02785 1.20245 0.88691 0.84549 0.76850 1.90771 1.74567 1.26443 1.47070 1.45856 1.07226 1.08819 1.76720 1.21044 0.77697 0.95683 1.04248 1.21842 0.93395 0.98923 1.05267 1.20237 0.88864 0.84028 0.76218 1.90723 1.74902 1.26266 1.50365 1.48173 1.07100 1.06182 1.72503 1.21651 0.78705 1.01845 0.98819 1.22017 1.00919 0.95550 0.98183 1.21377 0.94784 0.94374 1.00361 1.20222 0.91354 0.86424 0.95248 0.93734 1.22493 0.99509 0.99126 1.01511 1.42414 1.76156 1.08899 1.08922 1.19277 1.34965 0.93812 0.88451 0.91278 1.24704 1.02210 0.97426 0.96691 1.69660 1.49565 1.16378 1.22656 0.86165 0.77191 0.80661 0.82478 1.20642 1.21957 1.21959 1.21892 0.95985 1.01280 0.96987 1.21922 0.97585 0.82170 1.00171 0.89006 0.93686 0.93727 0.90049 0.90093 0.76488 0.90402 0.90340 0.87893 0.88094 0.91569 0.89266 0.90350 0.91680 0.91383 0.93036 0.93591 0.94278 0.78370 0.93652 0.91926 0.88872 0.91107 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.55 10.24 -55.14 -0.56 -4.12 16 3 C 0.04 0.29 6.42 36.01 0.23 0.52 16 4 C 0.51 5.21 7.91 -10.99 -0.09 5.12 16 5 O -0.51 -8.03 16.50 -14.35 -0.24 -8.27 16 6 N -0.73 -5.37 5.56 -60.30 -0.33 -5.71 16 7 C 0.14 1.31 4.96 -4.05 -0.02 1.29 16 8 C -0.15 -1.19 4.16 -27.89 -0.12 -1.31 16 9 C 0.52 6.14 7.70 -10.99 -0.08 6.05 16 10 O -0.54 -8.47 15.39 5.56 0.09 -8.38 16 11 N -0.61 -6.84 2.97 -172.79 -0.51 -7.36 16 12 C 0.11 1.30 6.43 -3.71 -0.02 1.28 16 13 C -0.13 -1.57 5.04 -26.62 -0.13 -1.71 16 14 C -0.09 -1.28 1.79 -90.57 -0.16 -1.44 16 15 C 0.18 3.22 2.47 -67.93 -0.17 3.05 16 16 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 17 C -0.17 -2.83 9.14 37.16 0.34 -2.49 16 18 N -0.72 -16.61 4.41 -53.43 -0.24 -16.85 16 19 C -0.23 -6.15 9.93 -15.06 -0.15 -6.30 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 23 Si 0.90 21.70 29.55 -169.99 -5.02 16.67 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C -0.12 -1.66 5.22 -26.62 -0.14 -1.80 16 28 C 0.10 1.06 6.34 -3.73 -0.02 1.03 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 1.44 8.47 -40.82 -0.35 1.10 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.10 0.64 7.70 -51.93 -0.40 0.24 16 38 H 0.10 0.56 7.94 -51.93 -0.41 0.14 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.09 1.12 7.01 -51.93 -0.36 0.75 16 41 H 0.08 0.91 6.36 -51.93 -0.33 0.58 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 47 H 0.38 9.33 7.58 -40.82 -0.31 9.02 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 LS Contribution 415.93 15.07 6.27 6.27 Total: -1.00 -35.66 415.93 -8.42 -44.08 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -9.07 Total: 5.72 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 0.48 Total: 4.07 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.36 Total: -56.04 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.72 Total: -20.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.66 -8.42 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691666773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.457 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds