Wall clock time and date at job start Wed Apr 1 2020 01:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00027 * 2 1 4 4 C 1.52996 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46928 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47236 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00000 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99739 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99732 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.46969 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72561 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.63818 * 323.30962 * 14 13 11 16 16 C 1.55154 * 110.71926 * 86.44742 * 14 13 11 17 17 C 1.54916 * 101.57850 * 153.86838 * 16 14 13 18 18 N 1.47428 * 104.82948 * 322.99182 * 17 16 14 19 19 C 1.36937 * 125.64508 * 204.16492 * 18 17 16 20 20 H 1.08005 * 119.99932 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00549 * 359.97354 * 19 18 17 22 22 N 1.31624 * 119.99470 * 0.02562 * 21 19 18 23 23 Si 1.86789 * 120.00485 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47114 * 60.00123 * 23 21 19 25 25 H 1.48505 * 109.47508 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47508 * 300.00195 * 23 21 19 27 27 C 1.47020 * 108.70770 * 24.12889 * 18 17 16 28 28 H 1.08995 * 109.88132 * 239.52958 * 27 18 17 29 29 C 1.52999 * 109.88259 * 118.35678 * 27 18 17 30 30 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47251 * 299.99966 * 1 2 3 32 32 H 1.09002 * 109.46980 * 60.00268 * 1 2 3 33 33 H 1.09000 * 109.46862 * 59.99822 * 3 2 1 34 34 H 1.09002 * 109.46815 * 299.99789 * 3 2 1 35 35 H 1.09000 * 109.47441 * 60.00140 * 4 3 2 36 36 H 1.08994 * 109.47235 * 299.99869 * 4 3 2 37 37 H 1.09001 * 109.47347 * 60.00308 * 5 4 3 38 38 H 1.08998 * 109.47779 * 300.00305 * 5 4 3 39 39 H 0.97000 * 119.99303 * 0.02562 * 6 5 4 40 40 H 1.09000 * 109.47664 * 59.99795 * 9 7 6 41 41 H 1.09002 * 109.46824 * 299.99265 * 9 7 6 42 42 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 43 43 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 44 44 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 45 45 H 1.09003 * 111.00551 * 271.93578 * 16 14 13 46 46 H 1.08994 * 111.00856 * 35.79518 * 16 14 13 47 47 H 1.08998 * 110.37037 * 81.82603 * 17 16 14 48 48 H 1.09000 * 110.36701 * 204.04347 * 17 16 14 49 49 H 0.97000 * 120.00015 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.47069 * 302.19336 * 29 27 18 51 51 H 1.08998 * 109.47177 * 62.19476 * 29 27 18 52 52 H 1.09007 * 109.46562 * 182.19738 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6181 2.4668 -0.0013 7 6 6.3820 3.5772 -0.0013 8 8 5.8604 4.6721 -0.0018 9 6 7.8843 3.4582 -0.0019 10 6 8.5066 4.8559 -0.0024 11 6 10.0089 4.7370 -0.0023 12 8 10.5305 3.6421 -0.0015 13 7 10.7728 5.8474 -0.0083 14 6 12.2333 5.7317 -0.0089 15 1 12.5522 4.8890 0.6045 16 6 12.7723 5.5917 -1.4570 17 6 14.2061 6.1600 -1.3114 18 7 14.0751 7.2739 -0.3545 19 6 14.9214 8.3460 -0.2572 20 1 14.7381 9.1135 0.4803 21 6 16.0148 8.4466 -1.1063 22 7 16.2380 7.5116 -2.0055 23 14 17.1688 9.9095 -0.9741 24 1 17.7655 9.9479 0.3853 25 1 18.2491 9.7809 -1.9849 26 1 16.4097 11.1624 -1.2169 27 6 12.8850 7.0434 0.4774 28 1 12.1850 7.8707 0.3602 29 6 13.2945 6.9081 1.9453 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6437 0.8891 37 1 3.8365 3.1236 0.8887 38 1 3.8357 3.1232 -0.8912 39 1 6.0352 1.5911 -0.0013 40 1 8.2057 2.9175 -0.8921 41 1 8.2062 2.9172 0.8879 42 1 8.1853 5.3971 0.8876 43 1 8.1846 5.3967 -0.8923 44 1 10.3557 6.7231 -0.0131 45 1 12.7959 4.5466 -1.7658 46 1 12.1838 6.1898 -2.1526 47 1 14.8780 5.3980 -0.9167 48 1 14.5693 6.5241 -2.2725 49 1 17.0023 7.5816 -2.5986 50 1 14.0088 6.0914 2.0494 51 1 13.7537 7.8376 2.2816 52 1 12.4124 6.6987 2.5507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691744930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:51 Heat of formation + Delta-G solvation = -133.846511 kcal Electronic energy + Delta-G solvation = -28920.392169 eV Core-core repulsion = 24726.199979 eV Total energy + Delta-G solvation = -4194.192190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.19487 -40.55573 -39.15807 -38.93007 -36.45649 -35.56503 -34.07227 -33.66291 -32.74172 -32.02952 -30.47908 -28.32001 -27.23747 -26.14979 -25.78440 -24.80758 -22.70819 -22.20972 -21.51170 -21.41685 -20.80397 -18.76103 -18.53440 -17.67054 -17.46633 -17.37977 -17.03718 -16.93927 -16.63652 -16.44931 -16.04103 -15.76589 -15.67512 -15.41775 -15.15404 -14.86293 -14.43168 -14.10445 -14.06581 -13.92187 -13.60952 -13.28786 -13.22374 -13.07333 -12.92395 -12.87734 -12.71959 -12.69509 -12.58134 -12.20486 -12.13438 -12.07171 -12.05719 -12.05117 -11.98408 -11.55691 -11.43132 -10.93850 -10.83635 -10.70584 -10.63862 -10.10415 -9.96422 -8.88467 -7.73494 -5.18507 1.49112 1.51799 1.57965 1.63342 1.69452 1.94689 2.34101 2.54711 2.91361 3.36896 3.55419 3.67073 3.87408 3.94484 3.94675 3.98601 4.08800 4.15452 4.18369 4.21259 4.26289 4.44523 4.49818 4.51299 4.52065 4.56752 4.63846 4.67899 4.71124 4.74098 4.83257 4.86705 4.91014 4.98176 5.01298 5.07986 5.09540 5.11621 5.16631 5.39189 5.44461 5.51201 5.61698 5.66584 5.81740 6.19963 6.32032 6.51895 6.62642 7.12635 7.22935 7.31180 7.80581 8.44158 9.28200 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042897 B = 0.001384 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.574731 B =20228.513072 C =20359.573985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.121 4.121 5 C 0.124 3.876 6 N -0.721 5.721 7 C 0.518 3.482 8 O -0.579 6.579 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.515 3.485 12 O -0.580 6.580 13 N -0.708 5.708 14 C 0.153 3.847 15 H 0.080 0.920 16 C -0.138 4.138 17 C 0.157 3.843 18 N -0.614 5.614 19 C -0.229 4.229 20 H 0.084 0.916 21 C -0.067 4.067 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.276 1.276 27 C 0.149 3.851 28 H 0.051 0.949 29 C -0.146 4.146 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.413 0.587 45 H 0.066 0.934 46 H 0.068 0.932 47 H -0.015 1.015 48 H 0.076 0.924 49 H 0.246 0.754 50 H 0.035 0.965 51 H 0.046 0.954 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.429 -12.674 5.137 33.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.159 4.159 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.305 3.695 8 O -0.459 6.459 9 C -0.159 4.159 10 C -0.155 4.155 11 C 0.303 3.697 12 O -0.460 6.460 13 N -0.359 5.359 14 C 0.047 3.953 15 H 0.098 0.902 16 C -0.178 4.178 17 C 0.031 3.969 18 N -0.339 5.339 19 C -0.358 4.358 20 H 0.102 0.898 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.202 1.202 27 C 0.042 3.958 28 H 0.069 0.931 29 C -0.205 4.205 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.250 0.750 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.003 0.997 48 H 0.094 0.906 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.065 0.935 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -30.163 -12.750 5.055 33.135 hybrid contribution 0.953 0.839 -0.143 1.278 sum -29.210 -11.911 4.911 31.925 Atomic orbital electron populations 1.22918 0.79453 1.03797 1.00903 1.87816 1.21479 1.28771 1.95649 1.22461 0.93313 0.84528 1.01397 1.21566 0.93806 0.95972 1.04552 1.21156 0.79459 0.97092 1.02277 1.45894 1.06908 1.09579 1.75024 1.20846 0.90045 0.83868 0.74699 1.90704 1.75930 1.27999 1.51272 1.21324 0.89544 0.98282 1.06767 1.21323 0.88457 0.99002 1.06760 1.21108 0.90420 0.83573 0.74585 1.90685 1.76118 1.27783 1.51454 1.45928 1.05644 1.09902 1.74439 1.21691 0.79801 0.97472 0.96299 0.90195 1.23187 0.97586 1.00326 0.96667 1.21668 0.91618 0.87810 0.95762 1.44715 1.27818 1.23052 1.38340 1.19365 1.03429 0.98596 1.14407 0.89771 1.25593 1.00494 1.01167 0.98705 1.70043 1.30411 1.35544 1.24114 0.85158 0.78199 0.79090 0.76917 1.20612 1.22313 1.20158 1.21221 0.89100 0.94386 0.91105 0.93103 1.22116 1.00808 1.00897 0.96682 0.88693 0.93144 0.93192 0.92220 0.92295 0.90000 0.89917 0.91677 0.91773 0.74637 0.87397 0.87142 0.87024 0.87396 0.74984 0.91549 0.91379 0.99725 0.90604 0.94463 0.94564 0.93530 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.37 10.70 -148.98 -1.59 -6.97 16 3 C 0.06 0.54 5.94 71.98 0.43 0.97 16 4 C -0.12 -0.96 5.70 30.59 0.17 -0.78 16 5 C 0.12 1.33 5.67 86.38 0.49 1.82 16 6 N -0.72 -8.26 5.56 -463.06 -2.57 -10.83 16 7 C 0.52 8.87 7.83 87.66 0.69 9.56 16 8 O -0.58 -14.22 15.98 -3.03 -0.05 -14.27 16 9 C -0.12 -1.87 4.99 29.85 0.15 -1.72 16 10 C -0.12 -2.09 4.99 29.85 0.15 -1.95 16 11 C 0.52 13.16 7.83 87.66 0.69 13.85 16 12 O -0.58 -19.00 15.71 -3.04 -0.05 -19.05 16 13 N -0.71 -18.64 5.20 -436.90 -2.27 -20.92 16 14 C 0.15 5.34 2.76 46.18 0.13 5.47 16 15 H 0.08 3.01 7.41 -2.39 -0.02 3.00 16 16 C -0.14 -5.45 6.77 31.99 0.22 -5.23 16 17 C 0.16 7.88 5.89 86.86 0.51 8.39 16 18 N -0.61 -30.71 3.13 -668.25 -2.09 -32.80 16 19 C -0.23 -12.48 9.89 84.03 0.83 -11.65 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 22 N -0.95 -56.71 10.09 21.65 0.22 -56.49 16 23 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.15 5.75 3.48 45.34 0.16 5.91 16 28 H 0.05 1.85 7.69 -2.39 -0.02 1.83 16 29 C -0.15 -5.16 9.14 71.98 0.66 -4.50 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.42 2.66 8.47 -92.71 -0.79 1.87 16 40 H 0.11 1.62 8.10 -2.39 -0.02 1.61 16 41 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 42 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 43 H 0.11 1.86 8.10 -2.39 -0.02 1.84 16 44 H 0.41 8.75 8.31 -92.71 -0.77 7.98 16 45 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 47 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 48 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 52 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -74.69 422.92 -0.05 -74.74 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.65 Total: 21.02 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.98 Total: 18.25 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.72 Total: -121.04 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.69 Total: -40.28 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.69 -0.05 -74.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691744930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.110 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds