Wall clock time and date at job start Wed Apr 1 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99827 * 2 1 4 4 C 1.50694 * 109.46792 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00629 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99990 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00032 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46880 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47324 * 179.97438 * 8 7 6 10 10 O 1.21294 * 119.99712 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00635 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.62534 * 5.11333 * 11 9 8 13 13 C 1.53189 * 108.77324 * 126.41611 * 12 11 9 14 14 C 1.53110 * 109.33371 * 54.63319 * 13 12 11 15 15 H 1.09005 * 109.44775 * 58.64914 * 14 13 12 16 16 C 1.52996 * 109.50752 * 178.62742 * 14 13 12 17 17 C 1.53036 * 109.50348 * 298.65960 * 14 13 12 18 18 C 1.46921 * 120.63302 * 185.14062 * 11 9 8 19 19 H 1.08997 * 109.70759 * 113.73118 * 18 11 9 20 20 C 1.53000 * 109.58947 * 353.36751 * 18 11 9 21 21 N 1.46502 * 109.47145 * 179.62984 * 20 18 11 22 22 C 1.36936 * 119.99519 * 174.61888 * 21 20 18 23 23 H 1.07998 * 120.00427 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99567 * 180.02562 * 22 21 20 25 25 N 1.31625 * 119.99784 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 120.00086 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47300 * 90.00166 * 26 24 22 28 28 H 1.48500 * 109.47035 * 210.00210 * 26 24 22 29 29 H 1.48504 * 109.47391 * 329.99711 * 26 24 22 30 30 H 1.09000 * 109.47539 * 299.99966 * 1 2 3 31 31 H 1.09004 * 109.47308 * 59.99955 * 1 2 3 32 32 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47041 * 59.99928 * 3 2 1 34 34 H 1.08994 * 109.47148 * 300.00335 * 3 2 1 35 35 H 0.97002 * 119.99488 * 0.02562 * 6 4 3 36 36 H 1.08999 * 109.47404 * 60.00155 * 7 6 4 37 37 H 1.09002 * 109.47147 * 300.00060 * 7 6 4 38 38 H 1.08999 * 109.47110 * 59.99811 * 8 7 6 39 39 H 1.09002 * 109.47146 * 299.99896 * 8 7 6 40 40 H 1.09000 * 109.58965 * 246.20030 * 12 11 9 41 41 H 1.08998 * 109.59134 * 6.48563 * 12 11 9 42 42 H 1.08999 * 109.49930 * 174.58549 * 13 12 11 43 43 H 1.09000 * 109.49842 * 294.65075 * 13 12 11 44 44 H 1.09002 * 109.47286 * 180.02562 * 16 14 13 45 45 H 1.08994 * 109.47583 * 300.05438 * 16 14 13 46 46 H 1.09008 * 109.46742 * 60.05425 * 16 14 13 47 47 H 1.09006 * 109.49551 * 301.37693 * 17 14 13 48 48 H 1.09004 * 109.49945 * 181.31233 * 17 14 13 49 49 H 1.08995 * 109.47281 * 299.63524 * 20 18 11 50 50 H 1.09004 * 109.46656 * 59.63556 * 20 18 11 51 51 H 0.97000 * 119.99788 * 354.61657 * 21 20 18 52 52 H 0.96996 * 119.99785 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2764 2.2968 0.0002 7 6 5.7368 2.1811 0.0003 8 6 6.3591 3.5789 0.0004 9 6 7.8614 3.4600 0.0011 10 8 8.3830 2.3649 0.0019 11 7 8.6254 4.5702 0.0018 12 6 8.0122 5.9007 0.1147 13 6 8.6715 6.6505 1.2765 14 6 10.1884 6.6729 1.0695 15 1 10.4180 7.1567 0.1201 16 6 10.8481 7.4505 2.2101 17 6 10.7232 5.2391 1.0536 18 6 10.0870 4.4733 -0.1108 19 1 10.4126 4.9086 -1.0555 20 6 10.5099 3.0041 -0.0502 21 7 11.9668 2.9098 -0.1715 22 6 12.5882 1.6974 -0.0335 23 1 12.0043 0.8107 0.1644 24 6 13.9688 1.6082 -0.1479 25 7 14.5662 0.4429 -0.0148 26 14 14.9786 3.1417 -0.4909 27 1 15.3748 3.7712 0.7943 28 1 16.1959 2.7717 -1.2569 29 1 14.1681 4.1013 -1.2831 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8592 3.1726 -0.0001 36 1 6.0585 1.6399 -0.8895 37 1 6.0585 1.6405 0.8905 38 1 6.0374 4.1197 0.8904 39 1 6.0375 4.1198 -0.8896 40 1 8.1665 6.4540 -0.8117 41 1 6.9439 5.7959 0.3040 42 1 8.2940 7.6724 1.3109 43 1 8.4394 6.1452 2.2140 44 1 11.9279 7.4665 2.0620 45 1 10.4674 8.4717 2.2216 46 1 10.6192 6.9666 3.1597 47 1 10.4722 4.7468 1.9932 48 1 11.8060 5.2560 0.9296 49 1 10.1959 2.5746 0.9011 50 1 10.0410 2.4571 -0.8682 51 1 12.4911 3.7062 -0.3497 52 1 15.5308 0.3805 -0.0951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691815519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:07 Heat of formation + Delta-G solvation = -89.561730 kcal Electronic energy + Delta-G solvation = -30462.940022 eV Core-core repulsion = 26270.668165 eV Total energy + Delta-G solvation = -4192.271858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.65772 -39.95176 -37.98937 -37.66151 -35.50060 -34.85014 -34.00582 -32.29179 -31.28312 -30.17959 -29.17439 -28.20596 -26.37300 -25.77548 -24.14466 -23.55647 -22.33907 -21.07496 -20.95566 -20.38635 -19.02149 -17.69651 -17.55930 -17.14969 -16.76900 -16.68089 -16.13313 -15.77828 -15.45940 -15.09110 -14.81940 -14.62940 -14.34558 -14.26617 -14.12241 -13.65031 -13.55316 -13.38182 -13.26751 -13.09840 -12.70177 -12.61099 -12.35978 -12.08117 -11.99290 -11.95066 -11.89063 -11.70032 -11.59528 -11.30670 -11.02459 -10.88673 -10.74332 -10.52390 -10.26784 -10.24764 -10.15638 -10.05044 -9.45895 -9.35417 -8.94103 -8.83110 -8.43261 -7.04270 -5.62586 -2.96572 2.35677 2.39467 2.67315 2.98744 3.43103 3.44359 3.51027 3.67763 4.29057 4.44903 4.49316 4.57150 4.63030 4.66312 4.68690 4.69509 4.76394 4.80116 4.87088 4.92182 5.02340 5.04279 5.15494 5.24632 5.26987 5.40632 5.48004 5.58182 5.60244 5.66854 5.67345 5.74932 5.77442 5.83981 5.87217 5.90887 6.05024 6.09548 6.11981 6.17224 6.44838 6.53241 6.58243 7.02436 7.15270 7.20427 7.45394 7.95621 8.14549 8.30308 8.57075 9.36343 10.08101 10.28219 11.56494 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002458 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.576243 B =11387.971093 C =13566.177686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.509 3.491 5 O -0.509 6.509 6 N -0.732 5.732 7 C 0.134 3.866 8 C -0.151 4.151 9 C 0.509 3.491 10 O -0.505 6.505 11 N -0.607 5.607 12 C 0.109 3.891 13 C -0.129 4.129 14 C -0.095 4.095 15 H 0.069 0.931 16 C -0.146 4.146 17 C -0.122 4.122 18 C 0.136 3.864 19 H 0.069 0.931 20 C 0.168 3.832 21 N -0.761 5.761 22 C -0.229 4.229 23 H 0.091 0.909 24 C -0.002 4.002 25 N -0.938 5.938 26 Si 0.883 3.117 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.045 0.955 50 H 0.050 0.950 51 H 0.354 0.646 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.722 18.026 1.366 33.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.294 3.706 5 O -0.382 6.382 6 N -0.387 5.387 7 C 0.010 3.990 8 C -0.192 4.192 9 C 0.295 3.705 10 O -0.379 6.379 11 N -0.342 5.342 12 C -0.015 4.015 13 C -0.167 4.167 14 C -0.113 4.113 15 H 0.088 0.912 16 C -0.203 4.203 17 C -0.161 4.161 18 C 0.034 3.966 19 H 0.087 0.913 20 C 0.042 3.958 21 N -0.409 5.409 22 C -0.359 4.359 23 H 0.109 0.891 24 C -0.197 4.197 25 N -0.587 5.587 26 Si 0.714 3.286 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.063 0.937 50 H 0.068 0.932 51 H 0.187 0.813 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -27.932 16.159 1.401 32.300 hybrid contribution 0.449 2.038 -0.237 2.100 sum -27.483 18.198 1.164 32.982 Atomic orbital electron populations 1.22852 0.80277 1.03483 1.00070 1.88048 1.19846 1.25076 1.95398 1.22225 0.91617 0.87163 1.02559 1.20243 0.88632 0.84648 0.77104 1.90803 1.74462 1.26381 1.46599 1.45849 1.07298 1.08595 1.76941 1.21092 0.77430 0.95712 1.04716 1.21858 0.93924 0.98887 1.04515 1.20269 0.88485 0.84452 0.77278 1.90927 1.73077 1.26494 1.47385 1.48106 1.07047 1.05707 1.73379 1.21717 0.97369 0.83458 0.98916 1.21990 0.95880 1.00193 0.98655 1.21176 0.94405 0.96492 0.99270 0.91207 1.21810 1.00833 0.99317 0.98364 1.22027 1.01018 0.93837 0.99188 1.21630 0.77632 0.99516 0.97867 0.91266 1.21283 0.83627 0.89690 1.01212 1.42953 1.02299 1.07278 1.88335 1.19080 0.90489 0.86492 1.39840 0.89125 1.24675 0.96239 0.96168 1.02582 1.69709 1.08898 1.22417 1.57645 0.86561 0.80290 0.83883 0.77902 1.21250 1.21868 1.20535 0.93786 0.93777 0.88981 0.90230 0.90215 0.76813 0.90085 0.90110 0.88506 0.88465 0.91399 0.89934 0.90938 0.91373 0.92437 0.92954 0.92654 0.91198 0.90328 0.93736 0.93204 0.81342 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.74 10.24 -55.14 -0.56 -4.30 16 3 C 0.04 0.31 6.42 36.00 0.23 0.54 16 4 C 0.51 5.55 7.91 -10.98 -0.09 5.46 16 5 O -0.51 -8.63 16.50 -14.36 -0.24 -8.87 16 6 N -0.73 -5.68 5.56 -60.30 -0.33 -6.02 16 7 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 8 C -0.15 -1.21 4.21 -27.89 -0.12 -1.33 16 9 C 0.51 6.82 7.61 -10.99 -0.08 6.73 16 10 O -0.50 -9.48 11.39 5.55 0.06 -9.42 16 11 N -0.61 -7.46 2.97 -165.22 -0.49 -7.95 16 12 C 0.11 0.83 6.33 -3.71 -0.02 0.81 16 13 C -0.13 -1.01 5.37 -26.58 -0.14 -1.16 16 14 C -0.09 -0.97 2.68 -90.55 -0.24 -1.22 16 15 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 16 C -0.15 -1.39 9.20 37.16 0.34 -1.05 16 17 C -0.12 -1.76 4.40 -26.61 -0.12 -1.87 16 18 C 0.14 2.16 3.03 -67.60 -0.21 1.95 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 20 C 0.17 3.63 4.10 -4.04 -0.02 3.62 16 21 N -0.76 -19.21 5.08 -59.91 -0.30 -19.52 16 22 C -0.23 -6.92 10.47 -15.06 -0.16 -7.08 16 23 H 0.09 3.00 8.06 -52.49 -0.42 2.58 16 24 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 25 N -0.94 -30.88 13.97 55.49 0.78 -30.11 16 26 Si 0.88 22.85 27.73 -169.99 -4.71 18.13 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 29 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 1.34 8.47 -40.82 -0.35 1.00 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.10 0.52 7.48 -51.93 -0.39 0.13 16 39 H 0.10 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.39 5.96 -51.93 -0.31 0.08 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.08 1.27 7.22 -51.93 -0.37 0.89 16 49 H 0.04 1.06 7.07 -51.93 -0.37 0.69 16 50 H 0.05 1.19 6.41 -51.93 -0.33 0.86 16 51 H 0.35 8.49 4.68 -40.82 -0.19 8.30 16 52 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -41.00 409.34 -8.35 -49.35 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -9.08 Total: 4.59 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 0.38 Total: 7.95 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.36 Total: -63.59 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.74 Total: -22.60 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -41.00 -8.35 -49.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691815519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.216 kcal (2) G-P(sol) polarization free energy of solvation -41.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds