Wall clock time and date at job start Wed Apr 1 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99827 * 2 1 4 4 C 1.50694 * 109.46792 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00629 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99990 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00032 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46880 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47324 * 179.97438 * 8 7 6 10 10 O 1.21294 * 119.99712 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00635 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.62534 * 5.11333 * 11 9 8 13 13 C 1.53189 * 108.77324 * 126.41611 * 12 11 9 14 14 C 1.53110 * 109.33371 * 54.63319 * 13 12 11 15 15 H 1.09005 * 109.44775 * 58.64914 * 14 13 12 16 16 C 1.52996 * 109.50752 * 178.62742 * 14 13 12 17 17 C 1.53036 * 109.50348 * 298.65960 * 14 13 12 18 18 C 1.46921 * 120.63302 * 185.14062 * 11 9 8 19 19 H 1.08997 * 109.70759 * 113.73118 * 18 11 9 20 20 C 1.53000 * 109.58947 * 353.36751 * 18 11 9 21 21 N 1.46502 * 109.47145 * 179.62984 * 20 18 11 22 22 C 1.36936 * 119.99519 * 174.61888 * 21 20 18 23 23 H 1.07998 * 120.00427 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99567 * 180.02562 * 22 21 20 25 25 N 1.31625 * 119.99784 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 120.00086 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47300 * 90.00166 * 26 24 22 28 28 H 1.48500 * 109.47035 * 210.00210 * 26 24 22 29 29 H 1.48504 * 109.47391 * 329.99711 * 26 24 22 30 30 H 1.09000 * 109.47539 * 299.99966 * 1 2 3 31 31 H 1.09004 * 109.47308 * 59.99955 * 1 2 3 32 32 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47041 * 59.99928 * 3 2 1 34 34 H 1.08994 * 109.47148 * 300.00335 * 3 2 1 35 35 H 0.97002 * 119.99488 * 0.02562 * 6 4 3 36 36 H 1.08999 * 109.47404 * 60.00155 * 7 6 4 37 37 H 1.09002 * 109.47147 * 300.00060 * 7 6 4 38 38 H 1.08999 * 109.47110 * 59.99811 * 8 7 6 39 39 H 1.09002 * 109.47146 * 299.99896 * 8 7 6 40 40 H 1.09000 * 109.58965 * 246.20030 * 12 11 9 41 41 H 1.08998 * 109.59134 * 6.48563 * 12 11 9 42 42 H 1.08999 * 109.49930 * 174.58549 * 13 12 11 43 43 H 1.09000 * 109.49842 * 294.65075 * 13 12 11 44 44 H 1.09002 * 109.47286 * 180.02562 * 16 14 13 45 45 H 1.08994 * 109.47583 * 300.05438 * 16 14 13 46 46 H 1.09008 * 109.46742 * 60.05425 * 16 14 13 47 47 H 1.09006 * 109.49551 * 301.37693 * 17 14 13 48 48 H 1.09004 * 109.49945 * 181.31233 * 17 14 13 49 49 H 1.08995 * 109.47281 * 299.63524 * 20 18 11 50 50 H 1.09004 * 109.46656 * 59.63556 * 20 18 11 51 51 H 0.97000 * 119.99788 * 354.61657 * 21 20 18 52 52 H 0.96996 * 119.99785 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2764 2.2968 0.0002 7 6 5.7368 2.1811 0.0003 8 6 6.3591 3.5789 0.0004 9 6 7.8614 3.4600 0.0011 10 8 8.3830 2.3649 0.0019 11 7 8.6254 4.5702 0.0018 12 6 8.0122 5.9007 0.1147 13 6 8.6715 6.6505 1.2765 14 6 10.1884 6.6729 1.0695 15 1 10.4180 7.1567 0.1201 16 6 10.8481 7.4505 2.2101 17 6 10.7232 5.2391 1.0536 18 6 10.0870 4.4733 -0.1108 19 1 10.4126 4.9086 -1.0555 20 6 10.5099 3.0041 -0.0502 21 7 11.9668 2.9098 -0.1715 22 6 12.5882 1.6974 -0.0335 23 1 12.0043 0.8107 0.1644 24 6 13.9688 1.6082 -0.1479 25 7 14.5662 0.4429 -0.0148 26 14 14.9786 3.1417 -0.4909 27 1 15.3748 3.7712 0.7943 28 1 16.1959 2.7717 -1.2569 29 1 14.1681 4.1013 -1.2831 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8592 3.1726 -0.0001 36 1 6.0585 1.6399 -0.8895 37 1 6.0585 1.6405 0.8905 38 1 6.0374 4.1197 0.8904 39 1 6.0375 4.1198 -0.8896 40 1 8.1665 6.4540 -0.8117 41 1 6.9439 5.7959 0.3040 42 1 8.2940 7.6724 1.3109 43 1 8.4394 6.1452 2.2140 44 1 11.9279 7.4665 2.0620 45 1 10.4674 8.4717 2.2216 46 1 10.6192 6.9666 3.1597 47 1 10.4722 4.7468 1.9932 48 1 11.8060 5.2560 0.9296 49 1 10.1959 2.5746 0.9011 50 1 10.0410 2.4571 -0.8682 51 1 12.4911 3.7062 -0.3497 52 1 15.5308 0.3805 -0.0951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691815519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:02 Heat of formation + Delta-G solvation = -123.279200 kcal Electronic energy + Delta-G solvation = -30464.402121 eV Core-core repulsion = 26270.668165 eV Total energy + Delta-G solvation = -4193.733957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.71475 -40.80762 -38.89701 -38.40463 -36.91706 -36.23953 -34.95844 -34.08245 -32.51408 -31.61654 -29.81290 -29.04513 -27.44214 -26.87877 -25.23360 -24.46158 -23.87744 -22.43382 -21.91407 -21.30232 -20.16945 -19.53042 -18.37749 -18.09449 -17.54980 -17.42388 -17.09781 -16.87969 -16.45319 -16.19045 -16.02331 -15.63948 -15.56347 -15.37927 -15.01182 -14.88120 -14.82617 -14.48625 -14.39820 -14.05311 -14.01545 -13.83500 -13.63408 -13.13843 -13.00630 -12.90950 -12.83344 -12.71451 -12.53222 -12.44777 -12.33501 -12.20842 -12.04640 -11.91945 -11.80919 -11.38405 -11.22078 -11.03188 -10.98593 -10.74439 -10.22898 -10.21439 -9.62200 -9.23904 -8.05271 -5.39744 1.31257 1.38686 1.46011 1.54049 1.63631 1.66438 2.11114 2.45493 3.13613 3.24400 3.49712 3.59695 3.73754 3.80352 3.84623 3.88228 3.99535 4.05743 4.12339 4.22355 4.25647 4.29781 4.31762 4.46488 4.51579 4.59360 4.60368 4.68889 4.70882 4.79790 4.82626 4.89620 4.90886 4.94417 4.96722 5.09549 5.13350 5.19042 5.24577 5.29705 5.31395 5.40392 5.56402 5.66347 5.72399 6.07240 6.17647 6.47448 6.56919 7.03276 7.23371 7.27500 7.78771 8.02862 9.17353 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002458 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.576243 B =11387.971093 C =13566.177686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.499 3.501 5 O -0.586 6.586 6 N -0.704 5.704 7 C 0.139 3.861 8 C -0.128 4.128 9 C 0.496 3.504 10 O -0.577 6.577 11 N -0.603 5.603 12 C 0.100 3.900 13 C -0.125 4.125 14 C -0.090 4.090 15 H 0.082 0.918 16 C -0.145 4.145 17 C -0.118 4.118 18 C 0.146 3.854 19 H 0.079 0.921 20 C 0.178 3.822 21 N -0.757 5.757 22 C -0.235 4.235 23 H 0.038 0.962 24 C -0.070 4.070 25 N -0.988 5.988 26 Si 0.966 3.034 27 H -0.272 1.272 28 H -0.291 1.291 29 H -0.248 1.248 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.426 0.574 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.056 0.944 49 H 0.011 0.989 50 H 0.022 0.978 51 H 0.365 0.635 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.559 24.437 0.880 39.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.030 4.030 4 C 0.287 3.713 5 O -0.465 6.465 6 N -0.360 5.360 7 C 0.014 3.986 8 C -0.168 4.168 9 C 0.285 3.715 10 O -0.456 6.456 11 N -0.337 5.337 12 C -0.020 4.020 13 C -0.163 4.163 14 C -0.109 4.109 15 H 0.101 0.899 16 C -0.202 4.202 17 C -0.157 4.157 18 C 0.042 3.958 19 H 0.097 0.903 20 C 0.052 3.948 21 N -0.405 5.405 22 C -0.366 4.366 23 H 0.056 0.944 24 C -0.261 4.261 25 N -0.638 5.638 26 Si 0.792 3.208 27 H -0.197 1.197 28 H -0.217 1.217 29 H -0.172 1.172 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.029 0.971 50 H 0.039 0.961 51 H 0.198 0.802 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -30.863 22.716 0.919 38.333 hybrid contribution 1.262 -0.063 -0.047 1.265 sum -29.601 22.653 0.872 37.284 Atomic orbital electron populations 1.23029 0.78126 1.04014 1.01875 1.87987 1.22325 1.27278 1.95850 1.22406 0.87949 0.86682 1.05951 1.21236 0.90760 0.83976 0.75371 1.90775 1.76080 1.29360 1.50253 1.45541 1.05750 1.09508 1.75236 1.20769 0.79413 0.97196 1.01263 1.21792 0.88946 0.97462 1.08590 1.21314 0.90924 0.83584 0.75668 1.90921 1.74761 1.29301 1.50637 1.48234 1.05247 1.07816 1.72393 1.22211 0.99324 0.80484 0.99984 1.22006 0.93669 1.02302 0.98299 1.21176 0.96412 0.92997 1.00273 0.89937 1.21800 1.00167 1.00593 0.97631 1.21966 0.99772 0.96785 0.97170 1.21269 0.80667 0.94829 0.99074 0.90316 1.21113 0.81197 0.94171 0.98276 1.42854 1.03890 1.05764 1.88039 1.18924 0.90782 0.86912 1.39967 0.94431 1.25677 0.97422 1.00610 1.02392 1.69931 1.09377 1.25647 1.58861 0.85253 0.77922 0.79115 0.78540 1.19745 1.21742 1.17240 0.91903 0.91893 0.89323 0.86533 0.86518 0.73460 0.93824 0.93902 0.84117 0.84010 0.89248 0.85681 0.87182 0.92162 0.93681 0.90303 0.93409 0.93425 0.92500 0.97052 0.96056 0.80155 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.42 -8.21 10.24 -129.94 -1.33 -9.54 16 3 C 0.05 0.57 6.42 71.23 0.46 1.03 16 4 C 0.50 10.77 7.91 87.65 0.69 11.46 16 5 O -0.59 -21.44 16.50 15.99 0.26 -21.17 16 6 N -0.70 -9.68 5.56 -463.06 -2.57 -12.25 16 7 C 0.14 3.03 4.96 86.38 0.43 3.46 16 8 C -0.13 -1.66 4.21 29.85 0.13 -1.53 16 9 C 0.50 13.21 7.61 87.66 0.67 13.87 16 10 O -0.58 -23.82 11.39 -3.07 -0.03 -23.86 16 11 N -0.60 -13.67 2.97 -795.03 -2.36 -16.03 16 12 C 0.10 0.98 6.33 86.36 0.55 1.52 16 13 C -0.12 -1.31 5.37 30.69 0.16 -1.15 16 14 C -0.09 -1.54 2.68 -10.75 -0.03 -1.57 16 15 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 16 C -0.14 -2.31 9.20 71.98 0.66 -1.65 16 17 C -0.12 -3.33 4.40 30.67 0.14 -3.20 16 18 C 0.15 4.59 3.03 44.98 0.14 4.72 16 19 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 20 C 0.18 8.27 4.10 86.38 0.35 8.63 16 21 N -0.76 -40.04 5.08 -343.45 -1.75 -41.79 16 22 C -0.23 -15.16 10.47 84.04 0.88 -14.28 16 23 H 0.04 2.76 8.06 -2.91 -0.02 2.73 16 24 C -0.07 -4.49 5.50 84.86 0.47 -4.03 16 25 N -0.99 -68.09 13.97 21.65 0.30 -67.79 16 26 Si 0.97 47.92 27.73 68.60 1.90 49.82 16 27 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 29 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.43 0.92 8.47 -92.71 -0.79 0.13 16 36 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.14 0.69 7.48 -2.39 -0.02 0.67 16 39 H 0.14 0.70 8.11 -2.39 -0.02 0.68 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.13 0.22 5.96 -2.39 -0.01 0.20 16 42 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.06 1.82 7.22 -2.39 -0.02 1.80 16 49 H 0.01 0.60 7.07 -2.39 -0.02 0.58 16 50 H 0.02 1.13 6.41 -2.39 -0.02 1.11 16 51 H 0.36 17.56 4.68 -92.71 -0.43 17.12 16 52 H 0.26 16.78 8.31 -92.71 -0.77 16.01 16 Total: -1.00 -105.71 409.34 1.00 -104.71 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.36 Total: 19.12 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.94 Total: 18.78 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -6.38 Total: -137.87 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -1.10 Total: -54.57 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.90 Total: 49.82 kcal Total: -105.71 1.00 -104.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691815519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.566 kcal (2) G-P(sol) polarization free energy of solvation -105.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds