Wall clock time and date at job start Wed Apr 1 2020 00:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46960 * 2 1 4 4 O 1.21281 * 120.00412 * 0.02562 * 3 2 1 5 5 N 1.34782 * 120.00026 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00124 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.47278 * 35.00410 * 6 5 3 8 8 C 1.52998 * 109.47342 * 275.00044 * 6 5 3 9 9 C 1.50703 * 109.46883 * 154.99968 * 6 5 3 10 10 O 1.21281 * 120.00285 * 10.44320 * 9 6 5 11 11 N 1.34772 * 119.99932 * 190.43900 * 9 6 5 12 12 C 1.46932 * 120.63153 * 182.71621 * 11 9 6 13 13 C 1.53196 * 108.77590 * 233.63328 * 12 11 9 14 14 C 1.53037 * 109.33403 * 305.37882 * 13 12 11 15 15 C 1.53036 * 109.54463 * 61.32007 * 14 13 12 16 16 H 1.09002 * 109.50016 * 58.64731 * 15 14 13 17 17 N 1.46497 * 109.50130 * 178.71383 * 15 14 13 18 18 C 1.36941 * 120.00038 * 59.93624 * 17 15 14 19 19 H 1.07996 * 119.99987 * 37.49078 * 18 17 15 20 20 C 1.38812 * 119.99919 * 217.49768 * 18 17 15 21 21 N 1.31621 * 120.00106 * 21.24346 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 201.25035 * 20 18 17 23 23 H 1.48499 * 109.47305 * 89.99808 * 22 20 18 24 24 H 1.48503 * 109.46936 * 210.00045 * 22 20 18 25 25 H 1.48500 * 109.46840 * 329.99274 * 22 20 18 26 26 C 1.46500 * 120.00243 * 239.93337 * 17 15 14 27 27 C 1.53002 * 109.46903 * 275.60242 * 26 17 15 28 28 O 1.42897 * 109.47077 * 294.99555 * 27 26 17 29 29 C 1.46924 * 120.63194 * 2.73532 * 11 9 6 30 30 H 1.08998 * 109.47059 * 300.00203 * 1 2 3 31 31 H 1.08999 * 109.46681 * 59.99767 * 1 2 3 32 32 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47059 * 239.99797 * 2 1 3 34 34 H 1.09000 * 109.47193 * 120.00116 * 2 1 3 35 35 H 0.97002 * 119.99734 * 0.02562 * 5 3 2 36 36 H 1.08996 * 109.47465 * 302.88237 * 8 6 5 37 37 H 1.08996 * 109.46910 * 62.88576 * 8 6 5 38 38 H 1.09000 * 109.47218 * 182.87958 * 8 6 5 39 39 H 1.09003 * 109.58383 * 353.41433 * 12 11 9 40 40 H 1.08997 * 109.58799 * 113.70057 * 12 11 9 41 41 H 1.09004 * 109.49603 * 65.31059 * 13 12 11 42 42 H 1.08998 * 109.49899 * 185.37733 * 13 12 11 43 43 H 1.08997 * 109.43418 * 301.30960 * 14 13 12 44 44 H 1.09001 * 109.48638 * 181.35241 * 14 13 12 45 45 H 0.97002 * 120.00292 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.47379 * 155.60199 * 26 17 15 47 47 H 1.08997 * 109.46867 * 35.59807 * 26 17 15 48 48 H 1.08997 * 109.47412 * 54.99656 * 27 26 17 49 49 H 1.09003 * 109.46867 * 174.99930 * 27 26 17 50 50 H 0.96702 * 114.00007 * 180.02562 * 28 27 26 51 51 H 1.08994 * 109.58657 * 6.58569 * 29 11 9 52 52 H 1.08999 * 109.59185 * 246.15640 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1730 3.6718 0.5887 8 6 3.8980 3.5702 -1.4373 9 6 5.2270 3.0930 0.6011 10 8 5.8282 2.0620 0.8166 11 7 5.7941 4.2787 0.8992 12 6 7.1626 4.3415 1.4303 13 6 7.1494 5.1470 2.7333 14 6 6.5112 6.5142 2.4773 15 6 5.0659 6.3252 2.0109 16 1 4.5069 5.7788 2.7705 17 7 4.4463 7.6352 1.7956 18 6 4.9794 8.5026 0.8799 19 1 5.3871 8.1264 -0.0467 20 6 4.9960 9.8655 1.1427 21 7 4.9040 10.2978 2.3825 22 14 5.1489 11.0860 -0.2631 23 1 3.7948 11.4491 -0.7529 24 1 5.8462 12.3069 0.2150 25 1 5.9273 10.4724 -1.3688 26 6 3.2563 8.0171 2.5599 27 6 2.0079 7.4622 1.8710 28 8 1.8525 8.0840 0.5938 29 6 5.0556 5.5330 0.6996 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9878 0.9298 0.0005 36 1 4.5304 2.9170 -2.0384 37 1 2.8913 3.5861 -1.8548 38 1 4.3093 4.5796 -1.4426 39 1 7.5244 3.3325 1.6282 40 1 7.8144 4.8276 0.7043 41 1 6.5712 4.6113 3.4863 42 1 8.1712 5.2825 3.0877 43 1 7.0757 7.0394 1.7070 44 1 6.5222 7.0986 3.3974 45 1 4.9152 11.2503 2.5662 46 1 3.1904 9.1038 2.6107 47 1 3.3261 7.6097 3.5685 48 1 2.1134 6.3852 1.7403 49 1 1.1315 7.6696 2.4851 50 1 1.0790 7.7797 0.0997 51 1 4.0272 5.3103 0.4155 52 1 5.5349 6.1186 -0.0848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692233552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:47 Heat of formation + Delta-G solvation = -103.583402 kcal Electronic energy + Delta-G solvation = -32436.838022 eV Core-core repulsion = 28243.958139 eV Total energy + Delta-G solvation = -4192.879883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.60688 -39.42840 -37.64634 -36.18222 -35.12337 -34.53391 -33.12148 -32.50453 -31.49262 -30.32892 -29.54211 -27.27884 -25.78101 -24.90639 -24.18572 -23.25833 -22.11065 -20.83191 -20.33998 -19.80878 -18.93133 -17.66415 -16.88062 -16.57971 -16.27602 -16.18860 -15.77273 -15.30390 -14.99247 -14.70843 -14.40481 -14.23112 -13.92601 -13.77249 -13.61295 -13.51983 -13.07597 -12.80577 -12.79435 -12.65126 -12.39913 -12.30638 -12.25029 -11.98548 -11.95041 -11.68046 -11.36797 -11.33827 -11.03323 -10.99101 -10.77076 -10.70224 -10.36273 -10.25705 -9.98510 -9.95898 -9.90681 -9.72451 -9.52562 -9.21607 -9.10710 -8.54549 -8.30507 -6.57495 -5.76813 -3.31726 2.49361 2.63850 2.79780 3.35196 3.42615 3.48762 3.51748 4.38475 4.54252 4.59389 4.85884 4.86455 5.04471 5.06438 5.15547 5.24698 5.27411 5.32347 5.35251 5.44913 5.51751 5.56301 5.59899 5.67871 5.71688 5.72696 5.76274 5.94861 5.99045 6.01426 6.09120 6.11732 6.14969 6.23276 6.28411 6.34435 6.40856 6.52086 6.59806 6.75886 6.78481 6.97048 7.17428 7.39646 7.53688 7.62876 7.84343 8.10715 8.18272 8.44102 8.59836 9.18795 9.82749 10.37891 11.26293 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003699 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.335376 B = 7567.627637 C = 8797.741345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.539 6.539 5 N -0.715 5.715 6 C 0.125 3.875 7 H 0.113 0.887 8 C -0.160 4.160 9 C 0.513 3.487 10 O -0.556 6.556 11 N -0.596 5.596 12 C 0.113 3.887 13 C -0.133 4.133 14 C -0.121 4.121 15 C 0.165 3.835 16 H 0.049 0.951 17 N -0.567 5.567 18 C -0.243 4.243 19 H 0.057 0.943 20 C 0.020 3.980 21 N -0.891 5.891 22 Si 0.897 3.103 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.280 1.280 26 C 0.147 3.853 27 C 0.059 3.941 28 O -0.544 6.544 29 C 0.090 3.910 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.253 0.747 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.351 0.649 51 H 0.079 0.921 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -17.276 -2.995 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.416 6.416 5 N -0.369 5.369 6 C 0.017 3.983 7 H 0.130 0.870 8 C -0.218 4.218 9 C 0.300 3.700 10 O -0.436 6.436 11 N -0.328 5.328 12 C -0.009 4.009 13 C -0.171 4.171 14 C -0.160 4.160 15 C 0.056 3.944 16 H 0.067 0.933 17 N -0.287 5.287 18 C -0.372 4.372 19 H 0.075 0.925 20 C -0.180 4.180 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.205 1.205 26 C 0.021 3.979 27 C -0.022 4.022 28 O -0.346 6.346 29 C -0.034 4.034 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.120 0.880 47 H 0.055 0.945 48 H 0.040 0.960 49 H 0.039 0.961 50 H 0.194 0.806 51 H 0.097 0.903 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.627 -16.620 -2.596 17.026 hybrid contribution -0.173 0.167 -0.805 0.840 sum -2.800 -16.453 -3.401 17.033 Atomic orbital electron populations 1.21531 0.92928 1.01506 1.03477 1.21616 0.98646 0.93565 1.04435 1.20816 0.81749 0.92052 0.75537 1.90722 1.55206 1.46443 1.49185 1.45860 1.07480 1.08055 1.75522 1.20743 0.93794 0.85038 0.98729 0.86970 1.22157 1.03533 1.02231 0.93903 1.20470 0.87720 0.83615 0.78196 1.90624 1.64613 1.32994 1.55366 1.48184 1.15706 1.06442 1.62429 1.21625 0.82206 1.01397 0.95658 1.21963 1.01135 0.97636 0.96408 1.21912 0.97441 0.94225 1.02426 1.20609 0.92991 0.88110 0.92645 0.93287 1.43655 1.26720 1.12518 1.45774 1.18741 1.35985 0.87036 0.95469 0.92509 1.25048 0.99504 0.98093 0.95347 1.69997 1.52395 1.13618 1.17314 0.86406 0.77729 0.80782 0.82375 1.21226 1.22199 1.20532 1.20999 0.82946 1.03416 0.90587 1.23080 0.99111 0.95012 0.84965 1.86822 1.49207 1.67461 1.31078 1.22681 0.95929 0.83069 1.01732 0.91908 0.91939 0.92131 0.88898 0.88847 0.75480 0.92015 0.90873 0.90147 0.89688 0.91434 0.92353 0.91338 0.91177 0.91719 0.93736 0.87982 0.94545 0.96041 0.96134 0.80594 0.90273 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.16 0.34 -0.79 16 2 C -0.14 -1.14 6.42 -27.88 -0.18 -1.32 16 3 C 0.51 6.18 7.79 -10.99 -0.09 6.10 16 4 O -0.54 -8.53 15.64 5.56 0.09 -8.45 16 5 N -0.72 -8.48 5.01 -54.94 -0.28 -8.76 16 6 C 0.13 1.70 2.13 -69.08 -0.15 1.55 16 7 H 0.11 1.71 6.42 -51.93 -0.33 1.37 16 8 C -0.16 -1.99 9.14 37.16 0.34 -1.65 16 9 C 0.51 7.71 7.04 -10.99 -0.08 7.63 16 10 O -0.56 -9.22 15.24 5.56 0.08 -9.14 16 11 N -0.60 -9.02 2.97 -172.76 -0.51 -9.53 16 12 C 0.11 1.61 6.44 -3.71 -0.02 1.59 16 13 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 14 C -0.12 -2.19 5.11 -26.69 -0.14 -2.32 16 15 C 0.17 3.12 2.78 -67.81 -0.19 2.93 16 16 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 17 N -0.57 -12.79 2.32 -165.53 -0.38 -13.18 16 18 C -0.24 -6.13 8.01 -15.06 -0.12 -6.25 16 19 H 0.06 1.45 6.75 -52.49 -0.35 1.09 16 20 C 0.02 0.53 4.90 -17.43 -0.09 0.45 16 21 N -0.89 -24.73 11.54 55.49 0.64 -24.09 16 22 Si 0.90 21.55 29.60 -169.99 -5.03 16.52 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 3.29 5.56 -4.04 -0.02 3.26 16 27 C 0.06 1.13 7.39 37.16 0.27 1.41 16 28 O -0.54 -11.09 13.40 -35.23 -0.47 -11.56 16 29 C 0.09 1.50 4.43 -3.71 -0.02 1.48 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.41 4.32 7.72 -40.82 -0.32 4.01 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.04 6.26 -51.93 -0.33 0.72 16 39 H 0.08 1.20 7.00 -51.93 -0.36 0.84 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.10 2.66 5.59 -51.93 -0.29 2.37 16 47 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.35 5.34 9.12 45.56 0.42 5.76 16 51 H 0.08 1.31 5.03 -51.93 -0.26 1.05 16 52 H 0.08 1.44 6.80 -51.93 -0.35 1.09 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -31.35 407.86 -8.04 -39.39 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.03 Total: 10.66 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.29 Total: 11.98 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.53 Total: -55.55 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.30 Total: -29.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.35 -8.04 -39.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.193 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds