Wall clock time and date at job start Wed Apr 1 2020 00:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46960 * 2 1 4 4 O 1.21281 * 120.00412 * 0.02562 * 3 2 1 5 5 N 1.34782 * 120.00026 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00124 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.47278 * 35.00410 * 6 5 3 8 8 C 1.52998 * 109.47342 * 275.00044 * 6 5 3 9 9 C 1.50703 * 109.46883 * 154.99968 * 6 5 3 10 10 O 1.21281 * 120.00285 * 10.44320 * 9 6 5 11 11 N 1.34772 * 119.99932 * 190.43900 * 9 6 5 12 12 C 1.46932 * 120.63153 * 182.71621 * 11 9 6 13 13 C 1.53196 * 108.77590 * 233.63328 * 12 11 9 14 14 C 1.53037 * 109.33403 * 305.37882 * 13 12 11 15 15 C 1.53036 * 109.54463 * 61.32007 * 14 13 12 16 16 H 1.09002 * 109.50016 * 58.64731 * 15 14 13 17 17 N 1.46497 * 109.50130 * 178.71383 * 15 14 13 18 18 C 1.36941 * 120.00038 * 59.93624 * 17 15 14 19 19 H 1.07996 * 119.99987 * 37.49078 * 18 17 15 20 20 C 1.38812 * 119.99919 * 217.49768 * 18 17 15 21 21 N 1.31621 * 120.00106 * 21.24346 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 201.25035 * 20 18 17 23 23 H 1.48499 * 109.47305 * 89.99808 * 22 20 18 24 24 H 1.48503 * 109.46936 * 210.00045 * 22 20 18 25 25 H 1.48500 * 109.46840 * 329.99274 * 22 20 18 26 26 C 1.46500 * 120.00243 * 239.93337 * 17 15 14 27 27 C 1.53002 * 109.46903 * 275.60242 * 26 17 15 28 28 O 1.42897 * 109.47077 * 294.99555 * 27 26 17 29 29 C 1.46924 * 120.63194 * 2.73532 * 11 9 6 30 30 H 1.08998 * 109.47059 * 300.00203 * 1 2 3 31 31 H 1.08999 * 109.46681 * 59.99767 * 1 2 3 32 32 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47059 * 239.99797 * 2 1 3 34 34 H 1.09000 * 109.47193 * 120.00116 * 2 1 3 35 35 H 0.97002 * 119.99734 * 0.02562 * 5 3 2 36 36 H 1.08996 * 109.47465 * 302.88237 * 8 6 5 37 37 H 1.08996 * 109.46910 * 62.88576 * 8 6 5 38 38 H 1.09000 * 109.47218 * 182.87958 * 8 6 5 39 39 H 1.09003 * 109.58383 * 353.41433 * 12 11 9 40 40 H 1.08997 * 109.58799 * 113.70057 * 12 11 9 41 41 H 1.09004 * 109.49603 * 65.31059 * 13 12 11 42 42 H 1.08998 * 109.49899 * 185.37733 * 13 12 11 43 43 H 1.08997 * 109.43418 * 301.30960 * 14 13 12 44 44 H 1.09001 * 109.48638 * 181.35241 * 14 13 12 45 45 H 0.97002 * 120.00292 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.47379 * 155.60199 * 26 17 15 47 47 H 1.08997 * 109.46867 * 35.59807 * 26 17 15 48 48 H 1.08997 * 109.47412 * 54.99656 * 27 26 17 49 49 H 1.09003 * 109.46867 * 174.99930 * 27 26 17 50 50 H 0.96702 * 114.00007 * 180.02562 * 28 27 26 51 51 H 1.08994 * 109.58657 * 6.58569 * 29 11 9 52 52 H 1.08999 * 109.59185 * 246.15640 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1730 3.6718 0.5887 8 6 3.8980 3.5702 -1.4373 9 6 5.2270 3.0930 0.6011 10 8 5.8282 2.0620 0.8166 11 7 5.7941 4.2787 0.8992 12 6 7.1626 4.3415 1.4303 13 6 7.1494 5.1470 2.7333 14 6 6.5112 6.5142 2.4773 15 6 5.0659 6.3252 2.0109 16 1 4.5069 5.7788 2.7705 17 7 4.4463 7.6352 1.7956 18 6 4.9794 8.5026 0.8799 19 1 5.3871 8.1264 -0.0467 20 6 4.9960 9.8655 1.1427 21 7 4.9040 10.2978 2.3825 22 14 5.1489 11.0860 -0.2631 23 1 3.7948 11.4491 -0.7529 24 1 5.8462 12.3069 0.2150 25 1 5.9273 10.4724 -1.3688 26 6 3.2563 8.0171 2.5599 27 6 2.0079 7.4622 1.8710 28 8 1.8525 8.0840 0.5938 29 6 5.0556 5.5330 0.6996 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9878 0.9298 0.0005 36 1 4.5304 2.9170 -2.0384 37 1 2.8913 3.5861 -1.8548 38 1 4.3093 4.5796 -1.4426 39 1 7.5244 3.3325 1.6282 40 1 7.8144 4.8276 0.7043 41 1 6.5712 4.6113 3.4863 42 1 8.1712 5.2825 3.0877 43 1 7.0757 7.0394 1.7070 44 1 6.5222 7.0986 3.3974 45 1 4.9152 11.2503 2.5662 46 1 3.1904 9.1038 2.6107 47 1 3.3261 7.6097 3.5685 48 1 2.1134 6.3852 1.7403 49 1 1.1315 7.6696 2.4851 50 1 1.0790 7.7797 0.0997 51 1 4.0272 5.3103 0.4155 52 1 5.5349 6.1186 -0.0848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692233552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:46 Heat of formation + Delta-G solvation = -126.262010 kcal Electronic energy + Delta-G solvation = -32437.821440 eV Core-core repulsion = 28243.958139 eV Total energy + Delta-G solvation = -4193.863301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77452 -40.51653 -39.10750 -37.69985 -36.26306 -36.10791 -34.09294 -33.67194 -33.20136 -31.52482 -30.96489 -29.01778 -26.96657 -25.96729 -25.85313 -24.35625 -23.52165 -22.25016 -21.46889 -21.28064 -20.15608 -18.71983 -18.42218 -18.16213 -17.65497 -17.31740 -16.78804 -16.68305 -16.35377 -16.06808 -16.02833 -15.48405 -15.42699 -15.14379 -14.82173 -14.52150 -14.48916 -14.35444 -14.00425 -13.93765 -13.68473 -13.52917 -13.28156 -13.09105 -13.04997 -12.84426 -12.79096 -12.63615 -12.61754 -12.48712 -12.34725 -12.00751 -11.95546 -11.75388 -11.60717 -11.54361 -11.33694 -10.97518 -10.86625 -10.67020 -10.40300 -10.24394 -9.73584 -8.45703 -7.74421 -5.30969 1.37578 1.48183 1.54369 1.57078 1.60525 1.72768 2.28947 2.58554 3.19858 3.38226 3.61228 3.75792 3.80330 3.92360 3.97959 4.03062 4.09308 4.16793 4.23889 4.28027 4.29751 4.40670 4.54024 4.56471 4.58493 4.66254 4.68623 4.75272 4.78475 4.85574 4.91080 4.98756 5.01197 5.02031 5.07112 5.07896 5.08969 5.16203 5.25826 5.39617 5.45075 5.48329 5.62358 5.75694 5.81738 6.28454 6.49503 6.55226 6.93848 7.17376 7.21354 7.27171 7.93709 8.45428 9.24681 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003699 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.335376 B = 7567.627637 C = 8797.741345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.507 3.493 4 O -0.582 6.582 5 N -0.709 5.709 6 C 0.128 3.872 7 H 0.096 0.904 8 C -0.151 4.151 9 C 0.517 3.483 10 O -0.567 6.567 11 N -0.596 5.596 12 C 0.113 3.887 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.162 3.838 16 H 0.052 0.948 17 N -0.579 5.579 18 C -0.227 4.227 19 H 0.055 0.945 20 C -0.029 4.029 21 N -0.920 5.920 22 Si 0.944 3.056 23 H -0.295 1.295 24 H -0.301 1.301 25 H -0.269 1.269 26 C 0.143 3.857 27 C 0.069 3.931 28 O -0.571 6.571 29 C 0.109 3.891 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.417 0.583 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.039 0.961 45 H 0.245 0.755 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.033 0.967 49 H 0.042 0.958 50 H 0.374 0.626 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -20.089 -3.840 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.296 3.704 4 O -0.461 6.461 5 N -0.363 5.363 6 C 0.019 3.981 7 H 0.114 0.886 8 C -0.210 4.210 9 C 0.305 3.695 10 O -0.447 6.447 11 N -0.327 5.327 12 C -0.008 4.008 13 C -0.158 4.158 14 C -0.151 4.151 15 C 0.055 3.945 16 H 0.070 0.930 17 N -0.299 5.299 18 C -0.358 4.358 19 H 0.073 0.927 20 C -0.226 4.226 21 N -0.565 5.565 22 Si 0.774 3.226 23 H -0.223 1.223 24 H -0.228 1.228 25 H -0.194 1.194 26 C 0.017 3.983 27 C -0.011 4.011 28 O -0.376 6.376 29 C -0.015 4.015 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.221 0.779 51 H 0.100 0.900 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.434 -19.491 -3.461 19.945 hybrid contribution -0.251 0.952 -0.521 1.114 sum -2.685 -18.539 -3.982 19.151 Atomic orbital electron populations 1.21542 0.93279 1.02711 1.01915 1.21695 0.98205 0.90865 1.06732 1.21616 0.81219 0.93392 0.74180 1.90705 1.56129 1.48133 1.51169 1.45855 1.07798 1.07488 1.75195 1.20626 0.92485 0.86062 0.98917 0.88639 1.22078 1.03533 1.02065 0.93322 1.20634 0.87995 0.83175 0.77712 1.90620 1.65089 1.33198 1.55832 1.48155 1.16015 1.05938 1.62622 1.21710 0.81797 1.01808 0.95526 1.21855 1.02047 0.95120 0.96823 1.21761 0.96996 0.95989 1.00393 1.20745 0.93181 0.86646 0.93966 0.93013 1.43773 1.27281 1.13324 1.45484 1.18878 1.33966 0.87334 0.95612 0.92722 1.25575 1.00854 0.99530 0.96643 1.70112 1.54748 1.13074 1.18582 0.85644 0.76981 0.79178 0.80784 1.22298 1.22818 1.19410 1.20918 0.84525 1.01382 0.91488 1.22851 0.98275 0.95131 0.84818 1.86742 1.50969 1.68176 1.31702 1.22284 0.96237 0.83289 0.99693 0.93696 0.93340 0.89473 0.86148 0.86706 0.74471 0.90765 0.91197 0.90800 0.88851 0.90542 0.92132 0.89147 0.93045 0.94260 0.94547 0.91650 0.94052 0.94894 0.93959 0.77939 0.89968 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.14 -1.78 6.42 29.85 0.19 -1.59 16 3 C 0.51 11.40 7.79 87.65 0.68 12.08 16 4 O -0.58 -18.09 15.64 -3.03 -0.05 -18.14 16 5 N -0.71 -15.40 5.01 -446.11 -2.23 -17.63 16 6 C 0.13 3.28 2.13 44.25 0.09 3.38 16 7 H 0.10 2.83 6.42 -2.39 -0.02 2.81 16 8 C -0.15 -3.55 9.14 71.98 0.66 -2.89 16 9 C 0.52 14.52 7.04 87.66 0.62 15.13 16 10 O -0.57 -17.37 15.24 -3.03 -0.05 -17.41 16 11 N -0.60 -17.02 2.97 -818.88 -2.43 -19.46 16 12 C 0.11 2.97 6.44 86.36 0.56 3.53 16 13 C -0.12 -3.26 6.08 30.67 0.19 -3.07 16 14 C -0.11 -4.04 5.11 30.62 0.16 -3.88 16 15 C 0.16 6.09 2.78 45.07 0.13 6.21 16 16 H 0.05 1.91 7.87 -2.39 -0.02 1.90 16 17 N -0.58 -26.29 2.32 -677.61 -1.57 -27.87 16 18 C -0.23 -11.59 8.01 84.03 0.67 -10.91 16 19 H 0.06 2.79 6.75 -2.91 -0.02 2.77 16 20 C -0.03 -1.59 4.90 84.86 0.42 -1.18 16 21 N -0.92 -52.64 11.54 21.65 0.25 -52.39 16 22 Si 0.94 44.98 29.60 68.60 2.03 47.01 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.14 6.47 5.56 86.38 0.48 6.95 16 27 C 0.07 2.61 7.39 71.98 0.53 3.14 16 28 O -0.57 -22.84 13.40 -148.98 -2.00 -24.83 16 29 C 0.11 3.55 4.43 86.37 0.38 3.93 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.42 7.71 7.72 -92.71 -0.72 7.00 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.82 6.26 -2.39 -0.01 1.81 16 39 H 0.09 2.37 7.00 -2.39 -0.02 2.35 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 2.03 7.70 -2.39 -0.02 2.02 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 46 H 0.07 3.51 5.59 -2.39 -0.01 3.49 16 47 H 0.04 1.77 8.04 -2.39 -0.02 1.75 16 48 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.37 10.90 9.12 -74.06 -0.68 10.22 16 51 H 0.08 2.65 5.03 -2.39 -0.01 2.63 16 52 H 0.07 2.39 6.80 -2.39 -0.02 2.38 16 Total: -1.00 -68.62 407.86 -0.09 -68.72 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.46 Total: 32.51 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 6.41 Total: 29.50 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -5.99 Total: -117.35 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -2.09 Total: -60.39 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.62 -0.09 -68.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.545 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds