Wall clock time and date at job start Wed Apr 1 2020 00:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47283 * 2 1 4 4 O 1.21276 * 119.99637 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99919 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00018 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46483 * 34.99885 * 6 5 3 8 8 C 1.52992 * 109.47025 * 275.00028 * 6 5 3 9 9 C 1.50697 * 109.47196 * 154.99753 * 6 5 3 10 10 O 1.21287 * 120.00025 * 9.19945 * 9 6 5 11 11 N 1.34774 * 120.00048 * 189.19799 * 9 6 5 12 12 C 1.46927 * 120.63209 * 2.74725 * 11 9 6 13 13 C 1.53618 * 108.54468 * 126.37003 * 12 11 9 14 14 C 1.53040 * 109.24165 * 54.85880 * 13 12 11 15 15 C 1.53049 * 109.53575 * 298.50914 * 14 13 12 16 16 H 1.08998 * 109.49975 * 301.41597 * 15 14 13 17 17 N 1.46499 * 109.52219 * 181.33255 * 15 14 13 18 18 C 1.36941 * 120.00017 * 300.15228 * 17 15 14 19 19 H 1.07996 * 119.99518 * 322.87801 * 18 17 15 20 20 C 1.38813 * 120.00042 * 142.88635 * 18 17 15 21 21 N 1.31620 * 119.99800 * 338.55722 * 20 18 17 22 22 Si 1.86798 * 120.00012 * 158.56247 * 20 18 17 23 23 H 1.48500 * 109.47217 * 59.99601 * 22 20 18 24 24 H 1.48500 * 109.47386 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47127 * 300.00031 * 22 20 18 26 26 C 1.46499 * 120.00089 * 120.14668 * 17 15 14 27 27 C 1.52995 * 109.47116 * 84.39527 * 26 17 15 28 28 O 1.42905 * 109.46788 * 65.00374 * 27 26 17 29 29 C 1.46922 * 120.63111 * 183.03148 * 11 9 6 30 30 H 1.09001 * 109.47600 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47353 * 300.00764 * 1 2 3 32 32 H 1.08999 * 109.46757 * 60.00310 * 1 2 3 33 33 H 1.08994 * 109.47297 * 239.99410 * 2 1 3 34 34 H 1.08999 * 109.46757 * 119.99690 * 2 1 3 35 35 H 0.96996 * 119.99948 * 359.97438 * 5 3 2 36 36 H 1.09002 * 109.47417 * 302.61772 * 8 6 5 37 37 H 1.09002 * 109.47603 * 62.61868 * 8 6 5 38 38 H 1.08998 * 109.47196 * 182.61388 * 8 6 5 39 39 H 1.09006 * 109.58659 * 246.20710 * 12 11 9 40 40 H 1.09001 * 109.58676 * 6.62673 * 12 11 9 41 41 H 1.09005 * 109.63339 * 294.86590 * 13 12 11 42 42 H 1.08995 * 109.46023 * 174.74681 * 13 12 11 43 43 H 1.09004 * 109.45772 * 178.49088 * 14 13 12 44 44 H 1.08999 * 109.46193 * 58.53086 * 14 13 12 45 45 H 0.96998 * 119.99563 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.47487 * 204.40009 * 26 17 15 47 47 H 1.09003 * 109.46997 * 324.40015 * 26 17 15 48 48 H 1.08997 * 109.47367 * 185.00103 * 27 26 17 49 49 H 1.08992 * 109.47494 * 305.00362 * 27 26 17 50 50 H 0.96702 * 113.99986 * 180.02562 * 28 27 26 51 51 H 1.09006 * 109.58843 * 353.36747 * 29 11 9 52 52 H 1.09002 * 109.59334 * 113.65444 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1729 3.6717 0.5887 8 6 3.8980 3.5701 -1.4373 9 6 5.2269 3.0930 0.6011 10 8 5.8191 2.0612 0.8376 11 7 5.8042 4.2794 0.8760 12 6 5.0765 5.5359 0.6513 13 6 5.0965 6.3516 1.9528 14 6 6.5454 6.5378 2.4092 15 6 7.1738 5.1705 2.6883 16 1 6.5947 4.6533 3.4533 17 7 8.5505 5.3506 3.1555 18 6 9.4674 5.9814 2.3576 19 1 9.4503 5.8265 1.2889 20 6 10.4187 6.8198 2.9223 21 7 10.2098 7.3462 4.1104 22 14 11.9954 7.2012 1.9959 23 1 11.6647 7.8530 0.7033 24 1 12.8386 8.1141 2.8087 25 1 12.7359 5.9399 1.7390 26 6 8.9464 4.8561 4.4765 27 6 9.3156 3.3747 4.3768 28 8 10.4752 3.2271 3.5548 29 6 7.1753 4.3412 1.4002 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.9877 0.9298 0.0013 36 1 4.5342 2.9194 -2.0373 37 1 2.8919 3.5816 -1.8565 38 1 4.3050 4.5812 -1.4421 39 1 5.5608 6.1012 -0.1450 40 1 4.0461 5.3164 0.3717 41 1 4.5369 5.8232 2.7248 42 1 4.6421 7.3267 1.7773 43 1 6.5653 7.1391 3.3182 44 1 7.1104 7.0442 1.6266 45 1 10.8744 7.9323 4.5049 46 1 9.8070 5.4218 4.8334 47 1 8.1172 4.9777 5.1735 48 1 9.5243 2.9844 5.3729 49 1 8.4856 2.8222 3.9367 50 1 10.7668 2.3115 3.4468 51 1 7.5302 3.3332 1.6152 52 1 7.8278 4.8089 0.6629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692233554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:51 Heat of formation + Delta-G solvation = -102.525753 kcal Electronic energy + Delta-G solvation = -31829.600448 eV Core-core repulsion = 27636.766428 eV Total energy + Delta-G solvation = -4192.834020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.64548 -39.47559 -37.60004 -36.20601 -35.19452 -34.62860 -33.14842 -32.32799 -31.32312 -30.76123 -29.44842 -27.26599 -25.85504 -24.95210 -24.18386 -23.13091 -22.21505 -20.85719 -20.45312 -19.77169 -18.96108 -17.73794 -16.77018 -16.60967 -16.46826 -16.08941 -15.86604 -15.40895 -14.90349 -14.70551 -14.38381 -14.19013 -14.02143 -13.86658 -13.62301 -13.45351 -13.19045 -12.88727 -12.83436 -12.63596 -12.45805 -12.35704 -12.33294 -12.01778 -11.99551 -11.77778 -11.43314 -11.32248 -10.99064 -10.96508 -10.79591 -10.65254 -10.39611 -10.24979 -10.07310 -9.93336 -9.87806 -9.68101 -9.55653 -9.29630 -9.07515 -8.51801 -8.28044 -6.54063 -5.74203 -3.27873 2.41381 2.63783 2.75106 3.30849 3.43035 3.48654 3.55338 4.33622 4.50749 4.54945 4.79541 4.79735 4.87993 4.92367 4.99798 5.21281 5.23737 5.25665 5.33644 5.37482 5.43636 5.50938 5.53616 5.57376 5.65314 5.67800 5.82744 5.92008 5.93464 5.94231 6.01672 6.12339 6.17544 6.20965 6.28072 6.35020 6.47794 6.56983 6.66253 6.76373 6.81378 7.02935 7.19486 7.31439 7.56063 7.65119 7.86619 8.02121 8.20177 8.46809 8.62635 9.22091 9.86269 10.41568 11.29016 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018375 B = 0.002768 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.433184 B =10114.781085 C =10626.167115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.544 6.544 5 N -0.714 5.714 6 C 0.124 3.876 7 H 0.111 0.889 8 C -0.161 4.161 9 C 0.509 3.491 10 O -0.546 6.546 11 N -0.596 5.596 12 C 0.101 3.899 13 C -0.134 4.134 14 C -0.121 4.121 15 C 0.167 3.833 16 H 0.048 0.952 17 N -0.568 5.568 18 C -0.240 4.240 19 H 0.056 0.944 20 C 0.018 3.982 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.147 3.853 27 C 0.058 3.942 28 O -0.544 6.544 29 C 0.103 3.897 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.253 0.747 46 H 0.103 0.897 47 H 0.036 0.964 48 H 0.020 0.980 49 H 0.023 0.977 50 H 0.350 0.650 51 H 0.083 0.917 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 -10.564 -7.038 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.421 6.421 5 N -0.368 5.368 6 C 0.015 3.985 7 H 0.129 0.871 8 C -0.219 4.219 9 C 0.295 3.705 10 O -0.425 6.425 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.173 4.173 14 C -0.161 4.161 15 C 0.059 3.941 16 H 0.066 0.934 17 N -0.287 5.287 18 C -0.370 4.370 19 H 0.073 0.927 20 C -0.182 4.182 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.208 1.208 26 C 0.021 3.979 27 C -0.023 4.023 28 O -0.345 6.345 29 C -0.020 4.020 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.120 0.880 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.041 0.959 50 H 0.193 0.807 51 H 0.102 0.898 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.241 -9.629 -6.810 19.271 hybrid contribution 1.312 -0.714 -0.312 1.526 sum -13.929 -10.343 -7.122 18.754 Atomic orbital electron populations 1.21527 0.92922 1.01575 1.03378 1.21625 0.98632 0.93529 1.04588 1.20815 0.81693 0.92075 0.75329 1.90693 1.55268 1.46518 1.49613 1.45865 1.07522 1.08126 1.75297 1.20763 0.94007 0.85231 0.98474 0.87144 1.22182 1.03434 1.02052 0.94272 1.20442 0.87516 0.83917 0.78622 1.90664 1.64855 1.32816 1.54118 1.48192 1.16520 1.05202 1.62967 1.22028 0.96294 0.85105 0.98712 1.22055 0.99466 0.99412 0.96359 1.21926 0.92377 0.99556 1.02205 1.20600 0.87526 0.93096 0.92904 0.93412 1.43636 1.03823 1.64840 1.16387 1.18694 1.08157 1.19741 0.90366 0.92668 1.25033 1.00166 0.95945 0.97017 1.69987 1.34130 1.31656 1.17732 0.86488 0.84257 0.77606 0.79009 1.21113 1.21958 1.20763 1.20993 1.00411 0.89557 0.86962 1.23094 0.86742 1.01459 0.90973 1.86832 1.46413 1.29075 1.72227 1.22387 0.79408 1.02424 0.97812 0.92075 0.91944 0.91986 0.88819 0.88733 0.75265 0.91737 0.90923 0.90500 0.90852 0.90219 0.92186 0.91173 0.91722 0.91179 0.93723 0.87971 0.94591 0.96215 0.95885 0.80686 0.89814 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.14 -1.05 6.42 -27.88 -0.18 -1.23 16 3 C 0.51 5.64 7.79 -10.99 -0.09 5.55 16 4 O -0.54 -7.72 15.64 5.56 0.09 -7.63 16 5 N -0.71 -7.84 5.00 -54.94 -0.27 -8.12 16 6 C 0.12 1.47 2.13 -69.09 -0.15 1.33 16 7 H 0.11 1.35 6.50 -51.93 -0.34 1.02 16 8 C -0.16 -1.62 9.13 37.15 0.34 -1.28 16 9 C 0.51 7.57 7.05 -10.99 -0.08 7.49 16 10 O -0.55 -9.70 15.24 5.55 0.08 -9.62 16 11 N -0.60 -8.97 2.97 -172.50 -0.51 -9.48 16 12 C 0.10 1.25 5.08 -3.49 -0.02 1.23 16 13 C -0.13 -1.81 6.10 -26.39 -0.16 -1.98 16 14 C -0.12 -2.20 5.11 -26.69 -0.14 -2.33 16 15 C 0.17 3.31 2.78 -67.81 -0.19 3.12 16 16 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 17 N -0.57 -13.33 2.33 -165.52 -0.39 -13.71 16 18 C -0.24 -6.25 8.02 -15.06 -0.12 -6.37 16 19 H 0.06 1.46 6.75 -52.49 -0.35 1.11 16 20 C 0.02 0.49 4.90 -17.43 -0.09 0.40 16 21 N -0.89 -25.15 11.53 55.49 0.64 -24.51 16 22 Si 0.90 21.90 29.60 -169.99 -5.03 16.87 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 26 C 0.15 3.40 5.56 -4.05 -0.02 3.38 16 27 C 0.06 1.16 7.39 37.15 0.27 1.43 16 28 O -0.54 -11.58 13.40 -35.23 -0.47 -12.05 16 29 C 0.10 1.90 5.76 -3.71 -0.02 1.88 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 4.22 7.72 -40.82 -0.32 3.91 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.71 6.12 -51.93 -0.32 0.39 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.80 4.99 -51.93 -0.26 0.54 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.10 2.72 5.56 -51.93 -0.29 2.43 16 47 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.35 5.55 9.12 45.56 0.42 5.96 16 51 H 0.08 1.72 7.00 -51.93 -0.36 1.36 16 52 H 0.07 1.46 6.81 -51.93 -0.35 1.11 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -32.70 407.70 -8.04 -40.74 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.03 Total: 9.43 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.29 Total: 11.95 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.53 Total: -55.83 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.30 Total: -29.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.70 -8.04 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.791 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds