Wall clock time and date at job start Wed Apr 1 2020 00:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47283 * 2 1 4 4 O 1.21276 * 119.99637 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99919 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00018 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46483 * 34.99885 * 6 5 3 8 8 C 1.52992 * 109.47025 * 275.00028 * 6 5 3 9 9 C 1.50697 * 109.47196 * 154.99753 * 6 5 3 10 10 O 1.21287 * 120.00025 * 9.19945 * 9 6 5 11 11 N 1.34774 * 120.00048 * 189.19799 * 9 6 5 12 12 C 1.46927 * 120.63209 * 2.74725 * 11 9 6 13 13 C 1.53618 * 108.54468 * 126.37003 * 12 11 9 14 14 C 1.53040 * 109.24165 * 54.85880 * 13 12 11 15 15 C 1.53049 * 109.53575 * 298.50914 * 14 13 12 16 16 H 1.08998 * 109.49975 * 301.41597 * 15 14 13 17 17 N 1.46499 * 109.52219 * 181.33255 * 15 14 13 18 18 C 1.36941 * 120.00017 * 300.15228 * 17 15 14 19 19 H 1.07996 * 119.99518 * 322.87801 * 18 17 15 20 20 C 1.38813 * 120.00042 * 142.88635 * 18 17 15 21 21 N 1.31620 * 119.99800 * 338.55722 * 20 18 17 22 22 Si 1.86798 * 120.00012 * 158.56247 * 20 18 17 23 23 H 1.48500 * 109.47217 * 59.99601 * 22 20 18 24 24 H 1.48500 * 109.47386 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47127 * 300.00031 * 22 20 18 26 26 C 1.46499 * 120.00089 * 120.14668 * 17 15 14 27 27 C 1.52995 * 109.47116 * 84.39527 * 26 17 15 28 28 O 1.42905 * 109.46788 * 65.00374 * 27 26 17 29 29 C 1.46922 * 120.63111 * 183.03148 * 11 9 6 30 30 H 1.09001 * 109.47600 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47353 * 300.00764 * 1 2 3 32 32 H 1.08999 * 109.46757 * 60.00310 * 1 2 3 33 33 H 1.08994 * 109.47297 * 239.99410 * 2 1 3 34 34 H 1.08999 * 109.46757 * 119.99690 * 2 1 3 35 35 H 0.96996 * 119.99948 * 359.97438 * 5 3 2 36 36 H 1.09002 * 109.47417 * 302.61772 * 8 6 5 37 37 H 1.09002 * 109.47603 * 62.61868 * 8 6 5 38 38 H 1.08998 * 109.47196 * 182.61388 * 8 6 5 39 39 H 1.09006 * 109.58659 * 246.20710 * 12 11 9 40 40 H 1.09001 * 109.58676 * 6.62673 * 12 11 9 41 41 H 1.09005 * 109.63339 * 294.86590 * 13 12 11 42 42 H 1.08995 * 109.46023 * 174.74681 * 13 12 11 43 43 H 1.09004 * 109.45772 * 178.49088 * 14 13 12 44 44 H 1.08999 * 109.46193 * 58.53086 * 14 13 12 45 45 H 0.96998 * 119.99563 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.47487 * 204.40009 * 26 17 15 47 47 H 1.09003 * 109.46997 * 324.40015 * 26 17 15 48 48 H 1.08997 * 109.47367 * 185.00103 * 27 26 17 49 49 H 1.08992 * 109.47494 * 305.00362 * 27 26 17 50 50 H 0.96702 * 113.99986 * 180.02562 * 28 27 26 51 51 H 1.09006 * 109.58843 * 353.36747 * 29 11 9 52 52 H 1.09002 * 109.59334 * 113.65444 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1729 3.6717 0.5887 8 6 3.8980 3.5701 -1.4373 9 6 5.2269 3.0930 0.6011 10 8 5.8191 2.0612 0.8376 11 7 5.8042 4.2794 0.8760 12 6 5.0765 5.5359 0.6513 13 6 5.0965 6.3516 1.9528 14 6 6.5454 6.5378 2.4092 15 6 7.1738 5.1705 2.6883 16 1 6.5947 4.6533 3.4533 17 7 8.5505 5.3506 3.1555 18 6 9.4674 5.9814 2.3576 19 1 9.4503 5.8265 1.2889 20 6 10.4187 6.8198 2.9223 21 7 10.2098 7.3462 4.1104 22 14 11.9954 7.2012 1.9959 23 1 11.6647 7.8530 0.7033 24 1 12.8386 8.1141 2.8087 25 1 12.7359 5.9399 1.7390 26 6 8.9464 4.8561 4.4765 27 6 9.3156 3.3747 4.3768 28 8 10.4752 3.2271 3.5548 29 6 7.1753 4.3412 1.4002 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.9877 0.9298 0.0013 36 1 4.5342 2.9194 -2.0373 37 1 2.8919 3.5816 -1.8565 38 1 4.3050 4.5812 -1.4421 39 1 5.5608 6.1012 -0.1450 40 1 4.0461 5.3164 0.3717 41 1 4.5369 5.8232 2.7248 42 1 4.6421 7.3267 1.7773 43 1 6.5653 7.1391 3.3182 44 1 7.1104 7.0442 1.6266 45 1 10.8744 7.9323 4.5049 46 1 9.8070 5.4218 4.8334 47 1 8.1172 4.9777 5.1735 48 1 9.5243 2.9844 5.3729 49 1 8.4856 2.8222 3.9367 50 1 10.7668 2.3115 3.4468 51 1 7.5302 3.3332 1.6152 52 1 7.8278 4.8089 0.6629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692233554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:50 Heat of formation + Delta-G solvation = -126.820512 kcal Electronic energy + Delta-G solvation = -31830.653948 eV Core-core repulsion = 27636.766428 eV Total energy + Delta-G solvation = -4193.887520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75087 -40.50940 -39.07225 -37.76137 -36.37462 -36.08198 -34.02315 -33.67204 -32.94905 -31.87989 -30.85833 -29.03024 -26.97772 -25.97717 -25.82657 -24.18256 -23.59335 -22.35670 -21.46819 -21.24491 -20.16605 -18.71618 -18.32765 -18.22072 -17.76617 -17.24784 -16.90921 -16.63255 -16.30411 -16.10987 -15.97471 -15.49420 -15.42369 -15.09497 -14.79000 -14.55126 -14.47293 -14.36449 -14.11917 -13.86011 -13.70888 -13.44983 -13.36794 -13.11086 -13.04683 -12.84260 -12.72988 -12.63952 -12.60825 -12.50533 -12.33446 -12.00408 -11.98144 -11.74001 -11.65254 -11.58842 -11.26935 -10.96954 -10.87121 -10.69958 -10.42475 -10.22805 -9.72216 -8.47667 -7.76684 -5.32499 1.42051 1.45709 1.50758 1.56691 1.60134 1.73610 2.30688 2.57226 3.26888 3.35291 3.53139 3.75377 3.77672 3.98446 3.99468 4.06558 4.09310 4.12503 4.24613 4.28491 4.29821 4.42267 4.50242 4.58336 4.59370 4.65415 4.71398 4.77692 4.78891 4.86339 4.86873 4.96341 5.00553 5.02404 5.06733 5.08821 5.13564 5.20919 5.27466 5.40127 5.42905 5.50299 5.63511 5.72215 5.79354 6.35933 6.48324 6.52967 6.98723 7.13821 7.19410 7.24730 7.91971 8.43758 9.22464 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018375 B = 0.002768 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.433184 B =10114.781085 C =10626.167115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.511 3.489 4 O -0.579 6.579 5 N -0.713 5.713 6 C 0.131 3.869 7 H 0.113 0.887 8 C -0.155 4.155 9 C 0.509 3.491 10 O -0.577 6.577 11 N -0.597 5.597 12 C 0.100 3.900 13 C -0.124 4.124 14 C -0.112 4.112 15 C 0.167 3.833 16 H 0.047 0.953 17 N -0.581 5.581 18 C -0.228 4.228 19 H 0.049 0.951 20 C -0.031 4.031 21 N -0.919 5.919 22 Si 0.945 3.055 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.289 1.289 26 C 0.143 3.857 27 C 0.068 3.932 28 O -0.573 6.573 29 C 0.122 3.878 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.038 0.962 44 H 0.050 0.950 45 H 0.247 0.753 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.047 0.953 49 H 0.028 0.972 50 H 0.374 0.626 51 H 0.061 0.939 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 -11.774 -8.423 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 C 0.300 3.700 4 O -0.458 6.458 5 N -0.367 5.367 6 C 0.022 3.978 7 H 0.130 0.870 8 C -0.213 4.213 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.163 4.163 14 C -0.152 4.152 15 C 0.059 3.941 16 H 0.065 0.935 17 N -0.301 5.301 18 C -0.359 4.359 19 H 0.066 0.934 20 C -0.227 4.227 21 N -0.564 5.564 22 Si 0.775 3.225 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.012 4.012 28 O -0.378 6.378 29 C -0.002 4.002 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.047 0.953 50 H 0.221 0.779 51 H 0.080 0.920 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.033 -10.865 -8.221 21.811 hybrid contribution 1.824 -0.421 0.132 1.876 sum -15.209 -11.286 -8.089 20.594 Atomic orbital electron populations 1.21533 0.93065 1.02675 1.02066 1.21703 0.98385 0.91253 1.06515 1.21477 0.81130 0.93255 0.74150 1.90677 1.55965 1.47903 1.51301 1.45929 1.07821 1.07856 1.75100 1.20725 0.91591 0.86160 0.99329 0.86987 1.22154 1.03783 1.02604 0.92747 1.20979 0.88371 0.83136 0.77826 1.90650 1.65908 1.33909 1.55289 1.48185 1.15305 1.06599 1.62762 1.22261 0.97831 0.83701 0.98319 1.21988 0.95976 1.01303 0.97024 1.21759 0.95363 0.97599 1.00432 1.20705 0.85743 0.94267 0.93356 0.93474 1.43790 1.05139 1.64933 1.16262 1.18774 1.08331 1.18473 0.90315 0.93350 1.25576 1.02461 0.96768 0.97900 1.70101 1.34532 1.32827 1.18979 0.85698 0.81562 0.76850 0.78379 1.20110 1.22367 1.21580 1.20930 0.99322 0.91130 0.86989 1.22871 0.86699 0.99260 0.92322 1.86749 1.46785 1.31622 1.72611 1.21849 0.81366 1.00383 0.96643 0.89740 0.93520 0.93060 0.86387 0.87095 0.74789 0.91732 0.90490 0.89326 0.89623 0.87039 0.91765 0.88475 0.94273 0.93103 0.94415 0.91455 0.93975 0.93502 0.95347 0.77924 0.92049 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.20 71.98 0.66 -1.08 16 2 C -0.14 -1.67 6.42 29.85 0.19 -1.48 16 3 C 0.51 10.20 7.79 87.66 0.68 10.89 16 4 O -0.58 -15.56 15.64 -3.02 -0.05 -15.60 16 5 N -0.71 -14.23 5.00 -446.12 -2.23 -16.46 16 6 C 0.13 2.81 2.13 44.24 0.09 2.91 16 7 H 0.11 2.44 6.50 -2.39 -0.02 2.42 16 8 C -0.15 -2.69 9.13 71.98 0.66 -2.04 16 9 C 0.51 14.34 7.05 87.66 0.62 14.95 16 10 O -0.58 -20.00 15.24 -3.05 -0.05 -20.05 16 11 N -0.60 -17.08 2.97 -818.06 -2.43 -19.50 16 12 C 0.10 2.19 5.08 86.51 0.44 2.63 16 13 C -0.12 -3.09 6.10 30.82 0.19 -2.90 16 14 C -0.11 -4.05 5.11 30.62 0.16 -3.89 16 15 C 0.17 6.63 2.78 45.07 0.13 6.76 16 16 H 0.05 1.87 7.87 -2.39 -0.02 1.85 16 17 N -0.58 -27.80 2.33 -677.59 -1.58 -29.38 16 18 C -0.23 -12.13 8.02 84.03 0.67 -11.45 16 19 H 0.05 2.61 6.75 -2.91 -0.02 2.59 16 20 C -0.03 -1.69 4.90 84.86 0.42 -1.28 16 21 N -0.92 -53.34 11.53 21.65 0.25 -53.09 16 22 Si 0.95 45.80 29.60 68.60 2.03 47.83 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 C 0.14 6.70 5.56 86.38 0.48 7.18 16 27 C 0.07 2.71 7.39 71.98 0.53 3.24 16 28 O -0.57 -24.16 13.40 -148.98 -2.00 -26.16 16 29 C 0.12 4.51 5.76 86.36 0.50 5.01 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.41 7.74 7.72 -92.71 -0.72 7.02 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.33 6.12 -2.39 -0.01 1.32 16 39 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.11 1.80 4.99 -2.39 -0.01 1.79 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.05 2.02 7.70 -2.39 -0.02 2.00 16 45 H 0.25 14.08 8.31 -92.71 -0.77 13.30 16 46 H 0.07 3.70 5.56 -2.39 -0.01 3.68 16 47 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 48 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.37 11.47 9.12 -74.06 -0.68 10.80 16 51 H 0.06 2.55 7.00 -2.38 -0.02 2.53 16 52 H 0.06 2.29 6.81 -2.39 -0.02 2.28 16 Total: -1.00 -72.93 407.70 -0.09 -73.02 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.46 Total: 29.95 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 6.41 Total: 29.45 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.98 Total: -118.43 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -2.09 Total: -61.81 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.93 -0.09 -73.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.805 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds