Wall clock time and date at job start Wed Apr 1 2020 00:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46770 * 2 1 4 4 O 1.21277 * 120.00030 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00055 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00071 * 180.02562 * 5 3 2 7 7 H 1.08994 * 109.47297 * 325.00426 * 6 5 3 8 8 C 1.52997 * 109.47154 * 85.00595 * 6 5 3 9 9 C 1.50702 * 109.46946 * 205.00204 * 6 5 3 10 10 O 1.21274 * 120.00204 * 351.27304 * 9 6 5 11 11 N 1.34780 * 119.99887 * 171.26978 * 9 6 5 12 12 C 1.46924 * 120.62882 * 176.98722 * 11 9 6 13 13 C 1.53191 * 108.89178 * 126.34388 * 12 11 9 14 14 C 1.53354 * 109.15237 * 54.57650 * 13 12 11 15 15 C 1.53035 * 109.60383 * 298.71426 * 14 13 12 16 16 H 1.09000 * 109.49975 * 301.41796 * 15 14 13 17 17 N 1.46504 * 109.52518 * 181.34214 * 15 14 13 18 18 C 1.36934 * 119.99609 * 300.14302 * 17 15 14 19 19 H 1.07999 * 120.00231 * 322.84057 * 18 17 15 20 20 C 1.38816 * 120.00108 * 142.83529 * 18 17 15 21 21 N 1.31619 * 119.99879 * 338.62998 * 20 18 17 22 22 Si 1.86797 * 120.00218 * 158.62442 * 20 18 17 23 23 H 1.48499 * 109.46964 * 60.00405 * 22 20 18 24 24 H 1.48500 * 109.47416 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47419 * 300.00850 * 22 20 18 26 26 C 1.46499 * 120.00185 * 120.14117 * 17 15 14 27 27 C 1.52994 * 109.47032 * 84.41662 * 26 17 15 28 28 O 1.42901 * 109.47155 * 65.00315 * 27 26 17 29 29 C 1.46926 * 120.62867 * 357.00665 * 11 9 6 30 30 H 1.08998 * 109.46858 * 299.99118 * 1 2 3 31 31 H 1.08998 * 109.47038 * 60.00094 * 1 2 3 32 32 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46858 * 240.00882 * 2 1 3 34 34 H 1.08992 * 109.46959 * 120.00343 * 2 1 3 35 35 H 0.96998 * 119.99599 * 0.02562 * 5 3 2 36 36 H 1.09000 * 109.46745 * 305.02148 * 8 6 5 37 37 H 1.09001 * 109.47559 * 65.01909 * 8 6 5 38 38 H 1.08996 * 109.47669 * 185.02402 * 8 6 5 39 39 H 1.09009 * 109.58486 * 246.19772 * 12 11 9 40 40 H 1.08999 * 109.59043 * 6.48279 * 12 11 9 41 41 H 1.09005 * 109.49673 * 174.65205 * 13 12 11 42 42 H 1.09000 * 109.49605 * 294.75188 * 13 12 11 43 43 H 1.08992 * 109.41712 * 178.67498 * 14 13 12 44 44 H 1.08998 * 109.43000 * 58.75742 * 14 13 12 45 45 H 0.97002 * 119.99818 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.46629 * 204.41617 * 26 17 15 47 47 H 1.08997 * 109.46766 * 324.41319 * 26 17 15 48 48 H 1.08996 * 109.46840 * 184.99507 * 27 26 17 49 49 H 1.08998 * 109.47378 * 305.00109 * 27 26 17 50 50 H 0.96698 * 114.00037 * 180.02562 * 28 27 26 51 51 H 1.08997 * 109.58871 * 353.37415 * 29 11 9 52 52 H 1.09002 * 109.58556 * 113.65659 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0485 0.0011 7 1 3.1733 3.6718 -0.5883 8 6 3.8967 3.5707 1.4382 9 6 5.2273 3.0930 -0.5989 10 8 5.8163 2.0613 -0.8425 11 7 5.8085 4.2796 -0.8650 12 6 7.1800 4.3408 -1.3883 13 6 7.1844 5.1775 -2.6715 14 6 6.5574 6.5467 -2.3815 15 6 5.1079 6.3618 -1.9270 16 1 4.5469 5.8409 -2.7030 17 7 4.5008 7.6723 -1.6812 18 6 5.0393 8.5109 -0.7422 19 1 5.4444 8.1069 0.1739 20 6 5.0647 9.8804 -0.9676 21 7 4.9782 10.3470 -2.1953 22 14 5.2216 11.0611 0.4714 23 1 6.4901 10.7932 1.1954 24 1 5.2242 12.4581 -0.0325 25 1 4.0747 10.8708 1.3953 26 6 3.3178 8.0856 -2.4401 27 6 2.0611 7.5269 -1.7698 28 8 1.9073 8.1185 -0.4781 29 6 5.0827 5.5366 -0.6367 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9877 0.9300 0.0005 36 1 2.9169 3.4556 1.9017 37 1 4.6355 3.0039 2.0049 38 1 4.1741 4.6248 1.4322 39 1 7.8332 4.8033 -0.6483 40 1 7.5326 3.3331 -1.6080 41 1 8.2099 5.3091 -3.0166 42 1 6.6039 4.6676 -3.4403 43 1 6.5797 7.1543 -3.2861 44 1 7.1238 7.0456 -1.5951 45 1 4.9955 11.3040 -2.3527 46 1 3.2636 9.1740 -2.4641 47 1 3.3873 7.7027 -3.4583 48 1 1.1894 7.7588 -2.3816 49 1 2.1549 6.4460 -1.6655 50 1 1.1292 7.8096 0.0058 51 1 4.0506 5.3180 -0.3628 52 1 5.5633 6.0954 0.1663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692233556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:59 Heat of formation + Delta-G solvation = -102.971620 kcal Electronic energy + Delta-G solvation = -32432.861302 eV Core-core repulsion = 28240.007948 eV Total energy + Delta-G solvation = -4192.853354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.60859 -39.42800 -37.64049 -36.17899 -35.12636 -34.53357 -33.12184 -32.49812 -31.49562 -30.32087 -29.53622 -27.27744 -25.78810 -24.90128 -24.18059 -23.25228 -22.11332 -20.83677 -20.33904 -19.80737 -18.93358 -17.66319 -16.87993 -16.57797 -16.27743 -16.18907 -15.77241 -15.31819 -14.98599 -14.70293 -14.40149 -14.23841 -13.92784 -13.77113 -13.61051 -13.52441 -13.06663 -12.79813 -12.78821 -12.65595 -12.39838 -12.30596 -12.25896 -11.96436 -11.94608 -11.68507 -11.36916 -11.33985 -11.01995 -10.98586 -10.78684 -10.66623 -10.38286 -10.24856 -9.98276 -9.96330 -9.90943 -9.73052 -9.53014 -9.21793 -9.10596 -8.54174 -8.30262 -6.57576 -5.76760 -3.31110 2.49612 2.63961 2.79226 3.35497 3.41861 3.47712 3.53700 4.38224 4.54388 4.59458 4.85916 4.86485 5.04492 5.06288 5.15370 5.24902 5.27647 5.32403 5.35386 5.44935 5.51907 5.56469 5.60825 5.67484 5.71562 5.72076 5.76536 5.94650 5.98607 6.01320 6.09136 6.11651 6.15405 6.23365 6.28741 6.34392 6.40477 6.52168 6.59908 6.75882 6.78576 6.96978 7.17261 7.39658 7.53676 7.63277 7.83885 8.10684 8.18271 8.44170 8.59913 9.18851 9.83049 10.37970 11.26450 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.003689 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.616556 B = 7588.995616 C = 8818.222924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.539 6.539 5 N -0.715 5.715 6 C 0.125 3.875 7 H 0.112 0.888 8 C -0.160 4.160 9 C 0.513 3.487 10 O -0.556 6.556 11 N -0.595 5.595 12 C 0.113 3.887 13 C -0.133 4.133 14 C -0.120 4.120 15 C 0.165 3.835 16 H 0.049 0.951 17 N -0.567 5.567 18 C -0.244 4.244 19 H 0.057 0.943 20 C 0.020 3.980 21 N -0.891 5.891 22 Si 0.896 3.104 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.147 3.853 27 C 0.059 3.941 28 O -0.544 6.544 29 C 0.090 3.910 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.408 0.592 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.103 0.897 47 H 0.036 0.964 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.351 0.649 51 H 0.079 0.921 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -17.258 2.660 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.416 6.416 5 N -0.369 5.369 6 C 0.017 3.983 7 H 0.130 0.870 8 C -0.219 4.219 9 C 0.300 3.700 10 O -0.436 6.436 11 N -0.327 5.327 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.160 4.160 15 C 0.056 3.944 16 H 0.067 0.933 17 N -0.286 5.286 18 C -0.373 4.373 19 H 0.074 0.926 20 C -0.180 4.180 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.207 1.207 26 C 0.020 3.980 27 C -0.022 4.022 28 O -0.345 6.345 29 C -0.034 4.034 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.121 0.879 47 H 0.054 0.946 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.194 0.806 51 H 0.097 0.903 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.763 -16.594 2.258 16.973 hybrid contribution -0.154 0.142 0.820 0.847 sum -2.918 -16.452 3.079 16.990 Atomic orbital electron populations 1.21531 0.92930 1.01507 1.03474 1.21617 0.98644 0.93566 1.04436 1.20814 0.81746 0.92053 0.75547 1.90722 1.55200 1.46451 1.49187 1.45852 1.07475 1.08061 1.75507 1.20735 0.93792 0.85031 0.98732 0.86989 1.22176 1.03245 1.02517 0.93928 1.20465 0.87649 0.83637 0.78237 1.90623 1.65324 1.32984 1.54653 1.48174 1.15504 1.06247 1.62814 1.21619 0.82109 1.01290 0.95884 1.22022 1.01129 0.97481 0.96539 1.21967 0.97479 0.94189 1.02356 1.20602 0.93039 0.87991 0.92718 0.93275 1.43648 1.27403 1.13271 1.44316 1.18690 1.35984 0.87273 0.95365 0.92568 1.25034 0.99490 0.98015 0.95430 1.69985 1.52297 1.12693 1.18379 0.86496 0.78036 0.80013 0.82865 1.21098 1.21957 1.20704 1.21006 0.82941 1.03348 0.90694 1.23077 0.99169 0.95286 0.84637 1.86826 1.48592 1.68913 1.30211 1.22691 0.96168 0.82939 1.01621 0.91932 0.91916 0.92133 0.88847 0.88896 0.75491 0.90962 0.92084 0.89969 0.91452 0.89696 0.91308 0.92348 0.91743 0.91183 0.93680 0.87926 0.94552 0.96135 0.96054 0.80605 0.90256 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.16 0.34 -0.79 16 2 C -0.14 -1.14 6.42 -27.88 -0.18 -1.32 16 3 C 0.51 6.18 7.79 -10.98 -0.09 6.10 16 4 O -0.54 -8.54 15.64 5.56 0.09 -8.45 16 5 N -0.71 -8.48 5.00 -54.94 -0.27 -8.76 16 6 C 0.13 1.70 2.13 -69.08 -0.15 1.55 16 7 H 0.11 1.70 6.51 -51.93 -0.34 1.36 16 8 C -0.16 -2.00 9.15 37.16 0.34 -1.66 16 9 C 0.51 7.71 7.05 -10.98 -0.08 7.63 16 10 O -0.56 -9.23 15.24 5.56 0.08 -9.14 16 11 N -0.60 -9.01 2.97 -172.77 -0.51 -9.53 16 12 C 0.11 1.61 6.43 -3.71 -0.02 1.59 16 13 C -0.13 -1.93 6.11 -26.45 -0.16 -2.09 16 14 C -0.12 -2.19 5.12 -26.53 -0.14 -2.32 16 15 C 0.17 3.12 2.79 -67.81 -0.19 2.93 16 16 H 0.05 0.92 7.87 -51.93 -0.41 0.52 16 17 N -0.57 -12.78 2.33 -165.53 -0.39 -13.17 16 18 C -0.24 -6.15 8.02 -15.06 -0.12 -6.27 16 19 H 0.06 1.43 6.75 -52.49 -0.35 1.07 16 20 C 0.02 0.54 4.90 -17.43 -0.09 0.45 16 21 N -0.89 -24.74 11.53 55.49 0.64 -24.10 16 22 Si 0.90 21.51 29.60 -169.99 -5.03 16.48 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.15 3.27 5.56 -4.05 -0.02 3.25 16 27 C 0.06 1.13 7.39 37.15 0.27 1.40 16 28 O -0.54 -11.09 13.40 -35.23 -0.47 -11.57 16 29 C 0.09 1.49 4.47 -3.71 -0.02 1.48 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.41 4.32 7.72 -40.82 -0.32 4.01 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.07 6.08 -51.93 -0.32 0.76 16 39 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 40 H 0.08 1.20 7.00 -51.93 -0.36 0.84 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.10 2.67 5.57 -51.93 -0.29 2.38 16 47 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.35 5.35 9.12 45.56 0.42 5.77 16 51 H 0.08 1.31 4.89 -51.93 -0.25 1.05 16 52 H 0.08 1.43 6.81 -51.93 -0.35 1.08 16 LS Contribution 407.68 15.07 6.14 6.14 Total: -1.00 -31.34 407.68 -8.03 -39.37 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.02 Total: 10.77 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.29 Total: 11.94 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.53 Total: -55.55 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.30 Total: -29.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.34 -8.03 -39.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692233556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.601 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds