Wall clock time and date at job start Wed Apr 1 2020 01:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00494 * 2 1 4 4 C 1.52997 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47279 * 305.00630 * 4 3 2 6 6 C 1.53003 * 109.46903 * 65.00502 * 4 3 2 7 7 C 1.53005 * 109.46944 * 185.00235 * 4 3 2 8 8 C 1.50703 * 109.46908 * 175.00442 * 7 4 3 9 9 O 1.21278 * 119.99853 * 359.97438 * 8 7 4 10 10 N 1.34774 * 119.99820 * 180.02562 * 8 7 4 11 11 C 1.46506 * 119.99882 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.27329 * 324.36503 * 11 10 8 13 13 C 1.54592 * 110.30469 * 86.45581 * 11 10 8 14 14 C 1.54935 * 102.92193 * 97.05946 * 13 11 10 15 15 N 1.48531 * 103.22993 * 37.41173 * 14 13 11 16 16 C 1.46902 * 111.00158 * 200.28190 * 15 14 13 17 17 C 1.50701 * 109.47049 * 293.83796 * 16 15 14 18 18 O 1.21293 * 119.99703 * 354.17263 * 17 16 15 19 19 N 1.34771 * 119.99997 * 174.16939 * 17 16 15 20 20 C 1.37095 * 120.00107 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00107 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00407 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99665 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00378 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47212 * 59.99956 * 24 22 20 26 26 H 1.48501 * 109.47333 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47167 * 300.00126 * 24 22 20 28 28 C 1.47902 * 105.81599 * 320.79383 * 15 14 13 29 29 H 1.09006 * 109.91759 * 265.97612 * 28 15 14 30 30 C 1.53001 * 109.91794 * 144.68386 * 28 15 14 31 31 H 1.09000 * 109.46851 * 299.99619 * 1 2 3 32 32 H 1.08998 * 109.47292 * 59.99287 * 1 2 3 33 33 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46830 * 60.00204 * 3 2 1 35 35 H 1.09004 * 109.47133 * 300.00623 * 3 2 1 36 36 H 1.09005 * 109.47118 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46859 * 299.99786 * 6 4 3 38 38 H 1.09000 * 109.47451 * 59.99755 * 6 4 3 39 39 H 1.08999 * 109.47101 * 55.00248 * 7 4 3 40 40 H 1.09001 * 109.46906 * 295.00010 * 7 4 3 41 41 H 0.96997 * 119.99990 * 359.97438 * 10 8 7 42 42 H 1.08996 * 110.72950 * 338.69752 * 13 11 10 43 43 H 1.09003 * 110.72038 * 215.41256 * 13 11 10 44 44 H 1.08999 * 110.66727 * 278.97478 * 14 13 11 45 45 H 1.09000 * 110.81026 * 155.91775 * 14 13 11 46 46 H 1.09005 * 109.46852 * 53.83726 * 16 15 14 47 47 H 1.08993 * 109.47178 * 173.83516 * 16 15 14 48 48 H 0.97001 * 120.00145 * 0.02562 * 19 17 16 49 49 H 0.96996 * 119.99598 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.46652 * 61.44953 * 30 28 15 51 51 H 1.09000 * 109.47456 * 181.44945 * 30 28 15 52 52 H 1.08999 * 109.47157 * 301.45871 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5680 0.8408 6 6 3.9952 0.5368 -1.3084 7 6 4.1575 2.5768 0.1251 8 6 5.6541 2.4491 0.2479 9 8 6.1721 1.3526 0.2365 10 7 6.4167 3.5535 0.3715 11 6 7.8715 3.4293 0.4914 12 1 8.1286 2.5397 1.0663 13 6 8.5221 3.3694 -0.9097 14 6 8.9633 4.8351 -1.1497 15 7 9.4174 5.2778 0.1934 16 6 9.4219 6.7435 0.2911 17 6 10.4645 7.3058 -0.6405 18 8 11.2089 6.5586 -1.2394 19 7 10.5698 8.6389 -0.8081 20 6 11.5180 9.1505 -1.6559 21 1 12.1809 8.4851 -2.1892 22 6 11.6269 10.5249 -1.8284 23 7 10.8207 11.3345 -1.1791 24 14 12.9194 11.2219 -2.9830 25 1 12.6869 10.7054 -4.3558 26 1 12.8297 12.7042 -2.9895 27 1 14.2694 10.8101 -2.5213 28 6 8.4642 4.6853 1.1567 29 1 7.6697 5.3978 1.3789 30 6 9.1963 4.2975 2.4430 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6887 1.8463 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 5.0819 0.4511 -1.3091 37 1 3.5521 -0.4550 -1.3980 38 1 3.6792 1.1533 -2.1499 39 1 3.7612 3.0731 1.0110 40 1 3.9144 3.1646 -0.7600 41 1 6.0023 4.4304 0.3810 42 1 7.7952 3.0577 -1.6596 43 1 9.3845 2.7027 -0.9063 44 1 8.1223 5.4392 -1.4899 45 1 9.7828 4.8803 -1.8671 46 1 8.4408 7.1291 0.0135 47 1 9.6520 7.0388 1.3147 48 1 9.9747 9.2365 -0.3289 49 1 10.8965 12.2939 -1.2998 50 1 9.6272 5.1891 2.8986 51 1 8.4926 3.8384 3.1373 52 1 9.9909 3.5889 2.2092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692399249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:38 Heat of formation + Delta-G solvation = -121.468520 kcal Electronic energy + Delta-G solvation = -30028.241510 eV Core-core repulsion = 25834.586071 eV Total energy + Delta-G solvation = -4193.655440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49560 -39.21323 -38.36258 -37.63068 -35.05478 -34.38998 -33.81839 -31.44380 -31.25687 -30.95729 -28.54849 -27.58318 -26.43431 -25.85524 -24.98002 -24.11722 -21.89547 -20.82098 -20.46729 -19.86106 -19.17696 -17.90014 -17.51834 -16.81414 -16.47419 -16.39693 -15.89082 -15.61906 -15.31806 -15.01519 -14.93469 -14.55973 -14.42881 -14.01917 -13.77221 -13.74262 -13.53550 -13.27298 -12.95707 -12.69268 -12.56491 -12.36533 -12.21218 -11.95139 -11.91219 -11.69684 -11.48200 -11.42674 -11.30359 -11.27766 -11.15623 -11.12354 -10.98559 -10.81246 -10.71620 -10.45165 -10.22440 -10.06764 -9.88681 -9.49471 -9.16848 -8.48660 -8.04632 -7.95206 -6.42917 -3.83656 2.45158 2.84432 3.19187 3.24916 3.29338 3.44495 3.89605 3.99498 4.22762 4.35305 4.45236 4.49511 4.64376 4.72481 4.82778 4.89358 4.96127 4.97302 5.00930 5.04309 5.16507 5.17328 5.23412 5.25689 5.27737 5.39611 5.42699 5.47811 5.54440 5.63536 5.67946 5.80756 5.87053 5.91014 5.92371 5.98004 6.01018 6.14324 6.22477 6.24407 6.30694 6.41210 6.48154 6.75745 7.13787 7.20111 7.30871 7.53917 8.04865 8.05183 8.60742 9.17155 9.53163 10.05294 10.74793 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.213851 B =15527.271121 C =16029.853815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.065 3.935 4 C -0.074 4.074 5 H 0.087 0.913 6 C -0.150 4.150 7 C -0.138 4.138 8 C 0.515 3.485 9 O -0.532 6.532 10 N -0.725 5.725 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.130 4.130 14 C 0.041 3.959 15 N -0.485 5.485 16 C 0.038 3.962 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.055 3.945 29 H 0.055 0.945 30 C -0.133 4.133 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.398 0.602 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.036 0.964 45 H 0.102 0.898 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.391 0.609 49 H 0.272 0.728 50 H 0.060 0.940 51 H 0.054 0.946 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.261 -15.286 5.775 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.093 4.093 5 H 0.106 0.894 6 C -0.207 4.207 7 C -0.178 4.178 8 C 0.302 3.698 9 O -0.408 6.408 10 N -0.376 5.376 11 C 0.033 3.967 12 H 0.117 0.883 13 C -0.169 4.169 14 C -0.087 4.087 15 N -0.209 5.209 16 C -0.093 4.093 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.054 4.054 29 H 0.073 0.927 30 C -0.191 4.191 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.232 0.768 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.073 0.927 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.732 -16.696 5.468 25.682 hybrid contribution -1.104 2.106 -0.371 2.406 sum -19.836 -14.591 5.097 25.146 Atomic orbital electron populations 1.22742 0.81080 1.02795 0.99920 1.87891 1.19548 1.27852 1.95378 1.22607 0.93753 0.84745 1.00082 1.20813 0.91970 0.95202 1.01272 0.89446 1.21893 1.03195 1.00623 0.94957 1.21666 0.92415 0.99238 1.04464 1.20512 0.89162 0.84307 0.75830 1.90693 1.74954 1.26115 1.49080 1.46238 1.07368 1.09129 1.74913 1.21894 0.78600 0.98934 0.97276 0.88292 1.22898 1.00608 0.97587 0.95783 1.23296 0.99586 0.93561 0.92232 1.64495 1.45568 1.07378 1.03479 1.22068 0.98091 0.88233 1.00956 1.19677 0.87680 0.83127 0.86595 1.90514 1.46159 1.58159 1.51103 1.41853 1.32815 1.04816 1.40699 1.19650 1.11937 0.90838 1.20427 0.87972 1.25250 0.98393 0.95935 0.98327 1.69605 1.38194 1.04180 1.42444 0.85922 0.80648 0.77397 0.80273 1.19942 1.20998 1.19882 1.22657 0.93794 0.94574 0.94362 0.92747 1.21712 1.00367 1.02130 0.94850 0.94122 0.94100 0.89613 0.93330 0.93200 0.90541 0.92156 0.93567 0.88757 0.88636 0.76761 0.91019 0.89848 0.94560 0.87966 0.93585 0.89271 0.77565 0.91858 0.92131 0.92682 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.46 10.24 -35.23 -0.36 -3.82 16 3 C 0.06 0.46 5.32 37.16 0.20 0.66 16 4 C -0.07 -0.62 2.27 -90.62 -0.21 -0.82 16 5 H 0.09 0.89 7.95 -51.93 -0.41 0.47 16 6 C -0.15 -1.44 8.83 37.16 0.33 -1.11 16 7 C -0.14 -0.94 5.17 -27.88 -0.14 -1.08 16 8 C 0.52 5.20 7.54 -10.99 -0.08 5.12 16 9 O -0.53 -7.32 13.66 5.56 0.08 -7.25 16 10 N -0.72 -6.72 5.08 -52.49 -0.27 -6.99 16 11 C 0.14 1.59 2.93 -66.57 -0.20 1.40 16 12 H 0.10 1.24 7.19 -51.93 -0.37 0.87 16 13 C -0.13 -1.70 6.78 -24.87 -0.17 -1.87 16 14 C 0.04 0.64 5.79 -1.90 -0.01 0.63 16 15 N -0.48 -7.72 4.62 -224.00 -1.03 -8.75 16 16 C 0.04 0.66 5.18 -4.97 -0.03 0.63 16 17 C 0.44 10.27 7.47 -10.99 -0.08 10.19 16 18 O -0.58 -15.32 14.39 5.55 0.08 -15.24 16 19 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.06 0.67 2.87 -66.64 -0.19 0.48 16 29 H 0.05 0.58 7.23 -51.93 -0.38 0.21 16 30 C -0.13 -1.49 9.32 37.16 0.35 -1.15 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.89 5.95 -51.93 -0.31 0.58 16 37 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.40 2.82 8.29 -40.82 -0.34 2.48 16 42 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.54 7.91 -51.93 -0.41 0.13 16 45 H 0.10 1.94 6.85 -51.93 -0.36 1.59 16 46 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 47 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 49 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 417.30 15.07 6.29 6.29 Total: -1.00 -33.01 417.30 -8.08 -41.09 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -9.14 Total: 10.00 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 0.64 Total: 6.46 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.64 Total: -53.43 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.20 Total: -26.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.01 -8.08 -41.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692399249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.376 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds