Wall clock time and date at job start Wed Apr 1 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00494 * 2 1 4 4 C 1.52997 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47279 * 305.00630 * 4 3 2 6 6 C 1.53003 * 109.46903 * 65.00502 * 4 3 2 7 7 C 1.53005 * 109.46944 * 185.00235 * 4 3 2 8 8 C 1.50703 * 109.46908 * 175.00442 * 7 4 3 9 9 O 1.21278 * 119.99853 * 359.97438 * 8 7 4 10 10 N 1.34774 * 119.99820 * 180.02562 * 8 7 4 11 11 C 1.46506 * 119.99882 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.27329 * 324.36503 * 11 10 8 13 13 C 1.54592 * 110.30469 * 86.45581 * 11 10 8 14 14 C 1.54935 * 102.92193 * 97.05946 * 13 11 10 15 15 N 1.48531 * 103.22993 * 37.41173 * 14 13 11 16 16 C 1.46902 * 111.00158 * 200.28190 * 15 14 13 17 17 C 1.50701 * 109.47049 * 293.83796 * 16 15 14 18 18 O 1.21293 * 119.99703 * 354.17263 * 17 16 15 19 19 N 1.34771 * 119.99997 * 174.16939 * 17 16 15 20 20 C 1.37095 * 120.00107 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00107 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00407 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99665 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00378 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47212 * 59.99956 * 24 22 20 26 26 H 1.48501 * 109.47333 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47167 * 300.00126 * 24 22 20 28 28 C 1.47902 * 105.81599 * 320.79383 * 15 14 13 29 29 H 1.09006 * 109.91759 * 265.97612 * 28 15 14 30 30 C 1.53001 * 109.91794 * 144.68386 * 28 15 14 31 31 H 1.09000 * 109.46851 * 299.99619 * 1 2 3 32 32 H 1.08998 * 109.47292 * 59.99287 * 1 2 3 33 33 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46830 * 60.00204 * 3 2 1 35 35 H 1.09004 * 109.47133 * 300.00623 * 3 2 1 36 36 H 1.09005 * 109.47118 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46859 * 299.99786 * 6 4 3 38 38 H 1.09000 * 109.47451 * 59.99755 * 6 4 3 39 39 H 1.08999 * 109.47101 * 55.00248 * 7 4 3 40 40 H 1.09001 * 109.46906 * 295.00010 * 7 4 3 41 41 H 0.96997 * 119.99990 * 359.97438 * 10 8 7 42 42 H 1.08996 * 110.72950 * 338.69752 * 13 11 10 43 43 H 1.09003 * 110.72038 * 215.41256 * 13 11 10 44 44 H 1.08999 * 110.66727 * 278.97478 * 14 13 11 45 45 H 1.09000 * 110.81026 * 155.91775 * 14 13 11 46 46 H 1.09005 * 109.46852 * 53.83726 * 16 15 14 47 47 H 1.08993 * 109.47178 * 173.83516 * 16 15 14 48 48 H 0.97001 * 120.00145 * 0.02562 * 19 17 16 49 49 H 0.96996 * 119.99598 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.46652 * 61.44953 * 30 28 15 51 51 H 1.09000 * 109.47456 * 181.44945 * 30 28 15 52 52 H 1.08999 * 109.47157 * 301.45871 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5680 0.8408 6 6 3.9952 0.5368 -1.3084 7 6 4.1575 2.5768 0.1251 8 6 5.6541 2.4491 0.2479 9 8 6.1721 1.3526 0.2365 10 7 6.4167 3.5535 0.3715 11 6 7.8715 3.4293 0.4914 12 1 8.1286 2.5397 1.0663 13 6 8.5221 3.3694 -0.9097 14 6 8.9633 4.8351 -1.1497 15 7 9.4174 5.2778 0.1934 16 6 9.4219 6.7435 0.2911 17 6 10.4645 7.3058 -0.6405 18 8 11.2089 6.5586 -1.2394 19 7 10.5698 8.6389 -0.8081 20 6 11.5180 9.1505 -1.6559 21 1 12.1809 8.4851 -2.1892 22 6 11.6269 10.5249 -1.8284 23 7 10.8207 11.3345 -1.1791 24 14 12.9194 11.2219 -2.9830 25 1 12.6869 10.7054 -4.3558 26 1 12.8297 12.7042 -2.9895 27 1 14.2694 10.8101 -2.5213 28 6 8.4642 4.6853 1.1567 29 1 7.6697 5.3978 1.3789 30 6 9.1963 4.2975 2.4430 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6887 1.8463 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 5.0819 0.4511 -1.3091 37 1 3.5521 -0.4550 -1.3980 38 1 3.6792 1.1533 -2.1499 39 1 3.7612 3.0731 1.0110 40 1 3.9144 3.1646 -0.7600 41 1 6.0023 4.4304 0.3810 42 1 7.7952 3.0577 -1.6596 43 1 9.3845 2.7027 -0.9063 44 1 8.1223 5.4392 -1.4899 45 1 9.7828 4.8803 -1.8671 46 1 8.4408 7.1291 0.0135 47 1 9.6520 7.0388 1.3147 48 1 9.9747 9.2365 -0.3289 49 1 10.8965 12.2939 -1.2998 50 1 9.6272 5.1891 2.8986 51 1 8.4926 3.8384 3.1373 52 1 9.9909 3.5889 2.2092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692399249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:34 Heat of formation + Delta-G solvation = -146.726112 kcal Electronic energy + Delta-G solvation = -30029.336762 eV Core-core repulsion = 25834.586071 eV Total energy + Delta-G solvation = -4194.750691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43272 -40.42585 -39.37276 -38.81649 -36.04647 -35.67769 -35.19337 -33.29503 -32.28802 -32.26900 -29.27242 -28.18243 -27.92563 -26.55532 -25.88318 -25.78561 -22.90283 -21.73473 -21.45144 -20.94708 -20.60914 -19.85839 -18.28967 -17.83003 -17.48306 -17.12476 -16.94382 -16.57233 -16.44806 -16.25061 -16.02962 -15.84583 -15.75758 -15.31912 -15.07173 -14.86041 -14.41787 -14.26448 -14.04318 -13.80591 -13.65278 -13.45876 -13.19572 -13.04285 -12.95856 -12.91606 -12.69230 -12.47335 -12.41850 -12.36870 -12.32226 -12.14857 -12.11577 -12.05575 -11.83142 -11.73358 -11.63810 -11.45962 -10.72771 -10.56490 -10.29168 -10.04583 -9.98698 -9.32899 -8.45436 -5.93603 1.39952 1.42070 1.52426 1.69225 2.07286 2.09544 2.29819 2.79393 2.96237 3.21551 3.32850 3.48684 3.72282 3.75534 3.92357 4.05199 4.09760 4.18293 4.24182 4.29262 4.34418 4.42925 4.46188 4.50091 4.50705 4.53100 4.56792 4.61608 4.68806 4.74363 4.75882 4.83003 4.88602 4.91654 4.95726 5.02512 5.05384 5.12749 5.15426 5.33922 5.38107 5.41751 5.43666 5.54748 5.86281 5.98582 6.12783 6.29352 6.58517 6.62795 7.14946 7.31634 7.58618 8.15221 8.71652 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.213851 B =15527.271121 C =16029.853815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.066 3.934 4 C -0.073 4.073 5 H 0.063 0.937 6 C -0.146 4.146 7 C -0.128 4.128 8 C 0.512 3.488 9 O -0.574 6.574 10 N -0.714 5.714 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.122 4.122 14 C 0.045 3.955 15 N -0.507 5.507 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.061 3.939 29 H 0.081 0.919 30 C -0.131 4.131 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.413 0.587 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.059 0.941 51 H 0.077 0.923 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.636 -14.091 6.735 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.011 4.011 4 C -0.092 4.092 5 H 0.082 0.918 6 C -0.203 4.203 7 C -0.168 4.168 8 C 0.301 3.699 9 O -0.453 6.453 10 N -0.366 5.366 11 C 0.043 3.957 12 H 0.108 0.892 13 C -0.161 4.161 14 C -0.083 4.083 15 N -0.232 5.232 16 C -0.080 4.080 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.047 4.047 29 H 0.099 0.901 30 C -0.189 4.189 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.250 0.750 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.128 0.872 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.096 0.904 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.150 -15.473 6.451 26.988 hybrid contribution -0.371 1.646 -0.669 1.815 sum -21.521 -13.827 5.781 26.226 Atomic orbital electron populations 1.22896 0.79618 1.03566 1.00918 1.87853 1.21289 1.29105 1.95619 1.22646 0.92411 0.84419 1.01585 1.20768 0.93327 0.95746 0.99332 0.91812 1.21824 1.01410 1.00545 0.96501 1.21670 0.89470 0.98668 1.06972 1.21136 0.90551 0.83603 0.74639 1.90693 1.75940 1.27794 1.50898 1.46095 1.06203 1.09913 1.74417 1.21619 0.79976 0.98452 0.95674 0.89163 1.22792 1.00407 0.95644 0.97236 1.23115 0.98232 0.95320 0.91599 1.64414 1.47876 1.06671 1.04282 1.21932 0.96981 0.88968 1.00113 1.20767 0.87928 0.82265 0.86222 1.90495 1.48002 1.58983 1.52721 1.41907 1.32749 1.05689 1.40827 1.19598 1.13229 0.91344 1.22091 0.90512 1.25976 1.00039 0.95658 0.99409 1.69659 1.38890 1.04556 1.42911 0.85030 0.78063 0.77269 0.78221 1.19829 1.19442 1.19907 1.22695 0.93745 0.94841 0.93466 0.90091 1.21717 1.00473 1.01866 0.94832 0.92985 0.93154 0.89130 0.91504 0.91843 0.92992 0.93367 0.92323 0.85682 0.86303 0.74974 0.90587 0.91146 0.93594 0.92225 0.90858 0.87171 0.76999 0.91341 0.92223 0.90400 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.95 10.24 -148.98 -1.53 -8.47 16 3 C 0.07 0.78 5.32 71.98 0.38 1.16 16 4 C -0.07 -1.11 2.27 -10.79 -0.02 -1.13 16 5 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 6 C -0.15 -2.75 8.83 71.98 0.64 -2.12 16 7 C -0.13 -1.34 5.17 29.85 0.15 -1.19 16 8 C 0.51 9.34 7.54 87.66 0.66 10.00 16 9 O -0.57 -15.64 13.66 -3.02 -0.04 -15.69 16 10 N -0.71 -11.30 5.08 -438.38 -2.23 -13.53 16 11 C 0.15 3.20 2.93 45.87 0.13 3.33 16 12 H 0.09 2.18 7.19 -2.39 -0.02 2.16 16 13 C -0.12 -3.18 6.78 31.80 0.22 -2.96 16 14 C 0.04 1.41 5.79 86.65 0.50 1.91 16 15 N -0.51 -15.65 4.62 -862.62 -3.98 -19.64 16 16 C 0.05 1.68 5.18 85.56 0.44 2.13 16 17 C 0.44 20.59 7.47 87.66 0.66 21.25 16 18 O -0.62 -33.95 14.39 -3.07 -0.04 -34.00 16 19 N -0.57 -28.93 5.29 -306.99 -1.62 -30.55 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 24 Si 0.99 42.71 29.55 68.60 2.03 44.73 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 C 0.06 1.32 2.87 45.06 0.13 1.45 16 29 H 0.08 1.37 7.23 -2.38 -0.02 1.36 16 30 C -0.13 -2.67 9.32 71.98 0.67 -2.00 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.05 1.24 5.95 -2.38 -0.01 1.23 16 37 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.41 4.18 8.29 -92.71 -0.77 3.41 16 42 H 0.08 1.90 8.05 -2.39 -0.02 1.89 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.33 7.91 -2.39 -0.02 1.31 16 45 H 0.06 2.38 6.85 -2.39 -0.02 2.37 16 46 H 0.07 2.03 7.98 -2.38 -0.02 2.01 16 47 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 49 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 50 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 51 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.78 417.30 -0.63 -75.41 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.58 Total: 35.01 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 7.09 Total: 15.26 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -7.55 Total: -112.26 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: -1.61 Total: -58.16 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.78 -0.63 -75.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692399249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.318 kcal (2) G-P(sol) polarization free energy of solvation -74.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds