Wall clock time and date at job start Wed Apr 1 2020 00:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47518 * 2 1 4 4 O 1.42907 * 109.46967 * 119.99869 * 2 1 3 5 5 C 1.42903 * 113.99838 * 149.99918 * 4 2 1 6 6 C 1.53000 * 109.46726 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99832 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 12 12 H 1.08995 * 110.28770 * 0.67064 * 11 9 7 13 13 C 1.54268 * 110.32291 * 238.54327 * 11 9 7 14 14 C 1.54374 * 105.05708 * 241.10366 * 13 11 9 15 15 N 1.48554 * 104.59827 * 23.85141 * 14 13 11 16 16 C 1.46906 * 110.99980 * 200.95998 * 15 14 13 17 17 C 1.50703 * 109.46859 * 290.12650 * 16 15 14 18 18 O 1.21286 * 120.00444 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99666 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00120 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99565 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00138 * 179.97438 * 20 19 17 23 23 N 1.31419 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47654 * 89.99829 * 24 22 20 26 26 H 1.48500 * 109.47080 * 209.99877 * 24 22 20 27 27 H 1.48496 * 109.47236 * 329.99414 * 24 22 20 28 28 C 1.48561 * 104.22391 * 320.51593 * 15 14 13 29 29 H 1.08997 * 109.47037 * 300.00376 * 1 2 3 30 30 H 1.08994 * 109.46768 * 60.00085 * 1 2 3 31 31 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47713 * 239.99613 * 2 1 3 33 33 H 1.09003 * 109.47031 * 300.00044 * 3 2 1 34 34 H 1.09001 * 109.46812 * 59.99677 * 3 2 1 35 35 H 1.08995 * 109.47447 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46938 * 60.00058 * 5 4 2 37 37 H 1.08992 * 109.47388 * 300.00049 * 5 4 2 38 38 H 1.09002 * 109.47398 * 300.00244 * 6 5 4 39 39 H 1.09001 * 109.47194 * 60.00425 * 6 5 4 40 40 H 1.08999 * 109.47333 * 89.99805 * 10 9 7 41 41 H 1.08997 * 109.47024 * 210.00620 * 10 9 7 42 42 H 1.09000 * 109.46875 * 330.00379 * 10 9 7 43 43 H 1.09001 * 110.31960 * 359.97438 * 13 11 9 44 44 H 1.09001 * 110.31976 * 122.20590 * 13 11 9 45 45 H 1.08996 * 110.40888 * 142.63583 * 14 13 11 46 46 H 1.09003 * 110.40980 * 264.95668 * 14 13 11 47 47 H 1.08998 * 109.47112 * 50.12321 * 16 15 14 48 48 H 1.09000 * 109.47139 * 170.13058 * 16 15 14 49 49 H 0.97001 * 120.00132 * 359.97438 * 19 17 16 50 50 H 0.96995 * 119.99598 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.41166 * 280.70195 * 28 15 14 52 52 H 1.08997 * 110.41040 * 158.25847 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2660 -1.3245 0.9887 6 6 3.6760 -2.0081 2.2947 7 6 5.0047 -2.6940 2.1070 8 8 5.5679 -2.6416 1.0343 9 7 5.5665 -3.3664 3.1310 10 6 4.8858 -3.4301 4.4268 11 6 6.8584 -4.0327 2.9488 12 1 7.2257 -3.8741 1.9350 13 6 6.7291 -5.5417 3.2420 14 6 7.6849 -5.8037 4.4256 15 7 7.8178 -4.4859 5.0983 16 6 9.0382 -4.4320 5.9142 17 6 8.8842 -5.3378 7.1087 18 8 7.8586 -5.9661 7.2653 19 7 9.8859 -5.4490 8.0036 20 6 9.7461 -6.2735 9.0901 21 1 8.8331 -6.8335 9.2290 22 6 10.7788 -6.3885 10.0124 23 7 11.8899 -5.7075 9.8430 24 14 10.5886 -7.5124 11.4922 25 1 11.0777 -8.8716 11.1479 26 1 11.3804 -6.9743 12.6275 27 1 9.1565 -7.5847 11.8780 28 6 7.8815 -3.5100 3.9800 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.0200 -0.5874 0.7125 37 1 3.1809 -2.0707 0.1988 38 1 3.7611 -1.2616 3.0844 39 1 2.9221 -2.7451 2.5712 40 1 4.2326 -4.3023 4.4516 41 1 5.6264 -3.5079 5.2228 42 1 4.2921 -2.5273 4.5700 43 1 5.7044 -5.7865 3.5219 44 1 7.0346 -6.1238 2.3725 45 1 7.2537 -6.5368 5.1073 46 1 8.6538 -6.1468 4.0629 47 1 9.8892 -4.7597 5.3171 48 1 9.2041 -3.4093 6.2528 49 1 10.7060 -4.9463 7.8786 50 1 12.6107 -5.7875 10.4871 51 1 8.8819 -3.4921 3.5475 52 1 7.5983 -2.5160 4.3262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698557266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:01 Heat of formation + Delta-G solvation = -111.566931 kcal Electronic energy + Delta-G solvation = -29876.331257 eV Core-core repulsion = 25683.105182 eV Total energy + Delta-G solvation = -4193.226075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47807 -39.05331 -38.50686 -37.54623 -35.11656 -33.89752 -33.67157 -31.83888 -31.21729 -30.60669 -28.58860 -27.62353 -27.15248 -26.27505 -24.43810 -23.83260 -21.70149 -21.23108 -20.84428 -19.19510 -18.97250 -17.92466 -17.73971 -16.80819 -16.53117 -16.18312 -16.01200 -15.42856 -15.27804 -15.12890 -14.68174 -14.50564 -14.12846 -14.02670 -13.77903 -13.58400 -13.35233 -13.10091 -12.83473 -12.71286 -12.60805 -12.48593 -12.26708 -12.19659 -11.98164 -11.91530 -11.78555 -11.69704 -11.52012 -11.48411 -11.43360 -11.12533 -11.02395 -10.90970 -10.69393 -10.40103 -10.22949 -9.92697 -9.88123 -9.50400 -8.83652 -8.47285 -8.06817 -7.96128 -6.42738 -3.83626 2.43767 2.68482 3.16737 3.25612 3.31232 3.43405 3.89189 4.01577 4.25144 4.40189 4.47075 4.61035 4.61795 4.70593 4.75684 4.79116 4.88282 5.02610 5.11689 5.19155 5.19993 5.21978 5.26618 5.33334 5.35399 5.39958 5.42144 5.45605 5.50208 5.56981 5.57520 5.67975 5.75472 5.77904 5.78713 5.81932 5.83608 5.90499 6.00731 6.16107 6.25313 6.40283 6.45487 6.90533 7.03645 7.14936 7.28631 7.54049 7.98794 8.04964 8.60555 9.17094 9.53435 10.05047 10.75022 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.001678 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.372225 B =16680.910167 C =16961.305222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.138 4.138 7 C 0.518 3.482 8 O -0.551 6.551 9 N -0.598 5.598 10 C 0.068 3.932 11 C 0.138 3.862 12 H 0.105 0.895 13 C -0.133 4.133 14 C 0.038 3.962 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.040 0.960 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.053 0.947 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.475 10.793 -18.624 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.177 4.177 7 C 0.306 3.694 8 O -0.430 6.430 9 N -0.331 5.331 10 C -0.074 4.074 11 C 0.034 3.966 12 H 0.123 0.877 13 C -0.172 4.172 14 C -0.090 4.090 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.110 4.110 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.071 0.929 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.237 10.504 -18.388 26.685 hybrid contribution 1.498 -0.348 0.135 1.544 sum -14.739 10.156 -18.252 25.564 Atomic orbital electron populations 1.21866 0.93572 1.02740 1.02523 1.22069 0.94926 0.92448 0.88117 1.22308 1.01725 0.96756 1.02573 1.87857 1.36698 1.70134 1.35908 1.22150 0.85391 0.95902 0.96406 1.21497 0.95231 1.01319 0.99695 1.20424 0.86727 0.78540 0.83690 1.90683 1.64537 1.61783 1.25955 1.47869 1.21076 1.51873 1.12243 1.21994 0.98849 1.01343 0.85262 1.21834 0.82779 0.91953 1.00062 0.87665 1.22729 1.01404 0.94693 0.98403 1.23164 0.97985 0.93059 0.94823 1.65164 1.35152 1.03794 1.16622 1.22068 0.91187 1.01044 0.95501 1.19671 0.85347 0.86600 0.85314 1.90496 1.29150 1.49355 1.77218 1.41864 1.15699 1.40983 1.21627 1.19689 1.02615 1.20957 0.99559 0.87925 1.25254 0.95038 0.98172 0.99471 1.69614 1.05525 1.41682 1.37515 0.85862 0.78501 0.79645 0.80304 1.20456 1.20942 1.19424 1.23530 0.97775 0.97872 0.91857 0.91740 0.91280 0.91971 0.92159 0.91671 0.91726 0.92376 0.92552 0.92546 0.87943 0.88000 0.92533 0.87914 0.91458 0.90343 0.90875 0.88027 0.94196 0.93138 0.89313 0.77528 0.91892 0.92882 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 37.16 0.36 -0.55 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.18 -1.16 9.53 37.16 0.35 -0.80 16 4 O -0.39 -3.69 9.99 -35.23 -0.35 -4.04 16 5 C 0.08 0.74 5.04 37.16 0.19 0.93 16 6 C -0.14 -1.23 4.62 -27.88 -0.13 -1.36 16 7 C 0.52 6.03 7.67 -10.98 -0.08 5.94 16 8 O -0.55 -8.10 15.34 5.56 0.09 -8.01 16 9 N -0.60 -6.73 2.74 -172.35 -0.47 -7.20 16 10 C 0.07 0.69 9.30 59.85 0.56 1.24 16 11 C 0.14 1.66 3.47 -66.55 -0.23 1.42 16 12 H 0.11 1.33 6.96 -51.93 -0.36 0.97 16 13 C -0.13 -1.62 6.48 -25.35 -0.16 -1.78 16 14 C 0.04 0.56 5.80 -2.19 -0.01 0.55 16 15 N -0.48 -7.46 3.94 -231.41 -0.91 -8.37 16 16 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 17 C 0.45 10.17 7.58 -10.98 -0.08 10.09 16 18 O -0.58 -14.99 14.42 5.55 0.08 -14.91 16 19 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 C 0.02 0.23 5.42 -2.18 -0.01 0.22 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 37 H 0.06 0.55 8.04 -51.93 -0.42 0.14 16 38 H 0.10 0.81 7.40 -51.93 -0.38 0.42 16 39 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 40 H 0.06 0.54 7.91 -51.93 -0.41 0.13 16 41 H 0.10 1.27 6.26 -51.93 -0.33 0.95 16 42 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 43 H 0.08 0.96 7.24 -51.93 -0.38 0.58 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 46 H 0.04 0.59 7.83 -51.93 -0.41 0.18 16 47 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 48 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 49 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 52 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 LS Contribution 414.78 15.07 6.25 6.25 Total: -1.00 -31.85 414.78 -8.34 -40.20 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -9.05 Total: 8.83 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.38 Total: 9.13 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.72 Total: -53.26 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.19 Total: -26.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.85 -8.34 -40.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.369 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds