Wall clock time and date at job start Wed Apr 1 2020 00:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47518 * 2 1 4 4 O 1.42907 * 109.46967 * 119.99869 * 2 1 3 5 5 C 1.42903 * 113.99838 * 149.99918 * 4 2 1 6 6 C 1.53000 * 109.46726 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99832 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 12 12 H 1.08995 * 110.28770 * 0.67064 * 11 9 7 13 13 C 1.54268 * 110.32291 * 238.54327 * 11 9 7 14 14 C 1.54374 * 105.05708 * 241.10366 * 13 11 9 15 15 N 1.48554 * 104.59827 * 23.85141 * 14 13 11 16 16 C 1.46906 * 110.99980 * 200.95998 * 15 14 13 17 17 C 1.50703 * 109.46859 * 290.12650 * 16 15 14 18 18 O 1.21286 * 120.00444 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99666 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00120 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99565 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00138 * 179.97438 * 20 19 17 23 23 N 1.31419 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47654 * 89.99829 * 24 22 20 26 26 H 1.48500 * 109.47080 * 209.99877 * 24 22 20 27 27 H 1.48496 * 109.47236 * 329.99414 * 24 22 20 28 28 C 1.48561 * 104.22391 * 320.51593 * 15 14 13 29 29 H 1.08997 * 109.47037 * 300.00376 * 1 2 3 30 30 H 1.08994 * 109.46768 * 60.00085 * 1 2 3 31 31 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47713 * 239.99613 * 2 1 3 33 33 H 1.09003 * 109.47031 * 300.00044 * 3 2 1 34 34 H 1.09001 * 109.46812 * 59.99677 * 3 2 1 35 35 H 1.08995 * 109.47447 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46938 * 60.00058 * 5 4 2 37 37 H 1.08992 * 109.47388 * 300.00049 * 5 4 2 38 38 H 1.09002 * 109.47398 * 300.00244 * 6 5 4 39 39 H 1.09001 * 109.47194 * 60.00425 * 6 5 4 40 40 H 1.08999 * 109.47333 * 89.99805 * 10 9 7 41 41 H 1.08997 * 109.47024 * 210.00620 * 10 9 7 42 42 H 1.09000 * 109.46875 * 330.00379 * 10 9 7 43 43 H 1.09001 * 110.31960 * 359.97438 * 13 11 9 44 44 H 1.09001 * 110.31976 * 122.20590 * 13 11 9 45 45 H 1.08996 * 110.40888 * 142.63583 * 14 13 11 46 46 H 1.09003 * 110.40980 * 264.95668 * 14 13 11 47 47 H 1.08998 * 109.47112 * 50.12321 * 16 15 14 48 48 H 1.09000 * 109.47139 * 170.13058 * 16 15 14 49 49 H 0.97001 * 120.00132 * 359.97438 * 19 17 16 50 50 H 0.96995 * 119.99598 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.41166 * 280.70195 * 28 15 14 52 52 H 1.08997 * 110.41040 * 158.25847 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2660 -1.3245 0.9887 6 6 3.6760 -2.0081 2.2947 7 6 5.0047 -2.6940 2.1070 8 8 5.5679 -2.6416 1.0343 9 7 5.5665 -3.3664 3.1310 10 6 4.8858 -3.4301 4.4268 11 6 6.8584 -4.0327 2.9488 12 1 7.2257 -3.8741 1.9350 13 6 6.7291 -5.5417 3.2420 14 6 7.6849 -5.8037 4.4256 15 7 7.8178 -4.4859 5.0983 16 6 9.0382 -4.4320 5.9142 17 6 8.8842 -5.3378 7.1087 18 8 7.8586 -5.9661 7.2653 19 7 9.8859 -5.4490 8.0036 20 6 9.7461 -6.2735 9.0901 21 1 8.8331 -6.8335 9.2290 22 6 10.7788 -6.3885 10.0124 23 7 11.8899 -5.7075 9.8430 24 14 10.5886 -7.5124 11.4922 25 1 11.0777 -8.8716 11.1479 26 1 11.3804 -6.9743 12.6275 27 1 9.1565 -7.5847 11.8780 28 6 7.8815 -3.5100 3.9800 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.0200 -0.5874 0.7125 37 1 3.1809 -2.0707 0.1988 38 1 3.7611 -1.2616 3.0844 39 1 2.9221 -2.7451 2.5712 40 1 4.2326 -4.3023 4.4516 41 1 5.6264 -3.5079 5.2228 42 1 4.2921 -2.5273 4.5700 43 1 5.7044 -5.7865 3.5219 44 1 7.0346 -6.1238 2.3725 45 1 7.2537 -6.5368 5.1073 46 1 8.6538 -6.1468 4.0629 47 1 9.8892 -4.7597 5.3171 48 1 9.2041 -3.4093 6.2528 49 1 10.7060 -4.9463 7.8786 50 1 12.6107 -5.7875 10.4871 51 1 8.8819 -3.4921 3.5475 52 1 7.5983 -2.5160 4.3262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698557266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:01 Heat of formation + Delta-G solvation = -133.144223 kcal Electronic energy + Delta-G solvation = -29877.266918 eV Core-core repulsion = 25683.105182 eV Total energy + Delta-G solvation = -4194.161736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46177 -40.36690 -39.41526 -38.90431 -36.25983 -35.76858 -34.33490 -33.31720 -32.73178 -31.52282 -29.64084 -28.44526 -28.10944 -27.42535 -26.05422 -24.78430 -22.47501 -22.27680 -21.79746 -20.92997 -19.90442 -19.85085 -18.60972 -17.77727 -17.60727 -17.33281 -17.09742 -16.65040 -16.33862 -16.22209 -15.87236 -15.84862 -15.55412 -15.39787 -14.85067 -14.64496 -14.33353 -14.05366 -13.94931 -13.70118 -13.50461 -13.40149 -13.14913 -13.10248 -13.09354 -13.02943 -12.93546 -12.84160 -12.72096 -12.62642 -12.39482 -12.32962 -12.14677 -12.11447 -12.07355 -11.81619 -11.59943 -11.45342 -10.88409 -10.54974 -10.32253 -9.98525 -9.69591 -9.36606 -8.44855 -5.93154 1.38741 1.42569 1.53829 1.55043 1.84522 2.08450 2.29430 2.73715 2.81214 3.22132 3.39084 3.51531 3.67651 3.78052 3.91972 3.99278 4.12487 4.14824 4.17004 4.25049 4.29892 4.30638 4.35100 4.41797 4.45523 4.52830 4.54232 4.67347 4.71595 4.71898 4.76999 4.77602 4.82521 4.89637 4.92523 4.93846 4.98729 5.07654 5.13496 5.18949 5.29353 5.34101 5.42663 5.52360 5.83332 5.87580 6.07824 6.25663 6.39179 6.62733 7.08527 7.15283 7.59242 8.14896 8.72608 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.001678 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.372225 B =16680.910167 C =16961.305222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.398 6.398 5 C 0.082 3.918 6 C -0.130 4.130 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.597 5.597 10 C 0.071 3.929 11 C 0.141 3.859 12 H 0.104 0.896 13 C -0.122 4.122 14 C 0.039 3.961 15 N -0.496 5.496 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.026 3.974 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.395 0.605 50 H 0.276 0.724 51 H 0.067 0.933 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 11.709 -19.227 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.318 6.318 5 C 0.005 3.995 6 C -0.170 4.170 7 C 0.308 3.692 8 O -0.465 6.465 9 N -0.329 5.329 10 C -0.071 4.071 11 C 0.036 3.964 12 H 0.122 0.878 13 C -0.161 4.161 14 C -0.089 4.089 15 N -0.220 5.220 16 C -0.086 4.086 17 C 0.232 3.768 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.103 4.103 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.087 0.913 48 H 0.127 0.873 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.820 11.437 -18.997 27.831 hybrid contribution 1.627 -0.614 0.265 1.759 sum -15.193 10.823 -18.731 26.435 Atomic orbital electron populations 1.21871 0.92457 1.02803 1.03283 1.22300 0.95862 0.92755 0.87597 1.22290 1.01214 0.96339 1.03257 1.87836 1.36535 1.70355 1.37047 1.22055 0.85361 0.95538 0.96506 1.21473 0.93902 1.01745 0.99864 1.20827 0.87273 0.78065 0.83047 1.90671 1.65581 1.63009 1.27236 1.47919 1.20828 1.51485 1.12633 1.22013 0.98368 1.02896 0.83868 1.21746 0.83214 0.91699 0.99701 0.87832 1.22634 1.00545 0.95199 0.97675 1.23046 0.98558 0.92288 0.94985 1.65115 1.34358 1.04624 1.17929 1.21930 0.92666 1.00451 0.93528 1.20679 0.84063 0.86107 0.85960 1.90476 1.30403 1.50717 1.78211 1.41936 1.16435 1.41233 1.21800 1.19650 1.02465 1.22427 1.01464 0.90252 1.26004 0.94473 0.99223 1.01582 1.69676 1.05903 1.42314 1.38387 0.84945 0.78258 0.78010 0.77239 1.19762 1.19691 1.19756 1.23528 0.98742 0.97162 0.90840 0.92024 0.89479 0.92254 0.91915 0.90027 0.92007 0.93145 0.93337 0.93268 0.86429 0.86545 0.92082 0.90087 0.88950 0.90512 0.89309 0.91545 0.93927 0.91260 0.87286 0.77135 0.91416 0.91514 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.56 71.98 0.69 -0.87 16 2 C 0.07 0.99 3.34 30.59 0.10 1.09 16 3 C -0.17 -2.07 9.53 71.98 0.69 -1.38 16 4 O -0.40 -7.13 9.99 -148.98 -1.49 -8.62 16 5 C 0.08 1.48 5.04 71.98 0.36 1.85 16 6 C -0.13 -2.09 4.62 29.85 0.14 -1.95 16 7 C 0.52 11.28 7.67 87.66 0.67 11.95 16 8 O -0.58 -16.63 15.34 -3.02 -0.05 -16.67 16 9 N -0.60 -12.46 2.74 -817.58 -2.24 -14.69 16 10 C 0.07 1.31 9.30 127.77 1.19 2.50 16 11 C 0.14 3.17 3.47 45.89 0.16 3.32 16 12 H 0.10 2.45 6.96 -2.39 -0.02 2.43 16 13 C -0.12 -2.83 6.48 31.49 0.20 -2.62 16 14 C 0.04 1.17 5.80 86.45 0.50 1.67 16 15 N -0.50 -14.85 3.94 -886.06 -3.49 -18.34 16 16 C 0.05 1.52 5.30 85.56 0.45 1.97 16 17 C 0.44 20.54 7.58 87.66 0.66 21.20 16 18 O -0.61 -32.63 14.42 -3.05 -0.04 -32.67 16 19 N -0.58 -29.10 5.29 -306.99 -1.62 -30.73 16 20 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 23 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 24 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.03 0.59 5.42 86.45 0.47 1.06 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.82 7.79 -2.39 -0.02 0.80 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 36 H 0.05 0.94 7.83 -2.39 -0.02 0.92 16 37 H 0.05 0.94 8.04 -2.39 -0.02 0.92 16 38 H 0.12 1.55 7.40 -2.39 -0.02 1.53 16 39 H 0.12 1.56 8.11 -2.39 -0.02 1.54 16 40 H 0.06 1.08 7.91 -2.39 -0.02 1.06 16 41 H 0.08 1.92 6.26 -2.39 -0.01 1.91 16 42 H 0.09 1.23 6.44 -2.39 -0.02 1.21 16 43 H 0.08 1.81 7.24 -2.39 -0.02 1.80 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.46 6.91 -2.39 -0.02 2.44 16 46 H 0.04 1.23 7.83 -2.39 -0.02 1.21 16 47 H 0.07 2.07 7.88 -2.39 -0.02 2.05 16 48 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 49 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 50 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 51 H 0.07 1.39 8.00 -2.39 -0.02 1.38 16 52 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 Total: -1.00 -69.39 414.78 1.13 -68.27 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.17 Total: 36.12 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 7.57 Total: 21.83 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -7.07 Total: -112.95 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -1.58 Total: -57.96 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -69.39 1.13 -68.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.875 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds