Wall clock time and date at job start Wed Apr 1 2020 00:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 O 1.42896 * 109.47378 * 120.00009 * 2 1 3 5 5 C 1.42903 * 114.00295 * 149.99777 * 4 2 1 6 6 C 1.53001 * 109.47414 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47295 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99827 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00071 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99866 * 359.97438 * 9 7 6 11 11 C 1.46497 * 119.99955 * 179.97438 * 9 7 6 12 12 H 1.09005 * 110.28974 * 359.32699 * 11 9 7 13 13 C 1.54255 * 110.32498 * 121.45494 * 11 9 7 14 14 C 1.54382 * 105.06425 * 118.89523 * 13 11 9 15 15 N 1.48567 * 104.58967 * 23.85394 * 14 13 11 16 16 C 1.46906 * 110.99486 * 200.96044 * 15 14 13 17 17 C 1.50701 * 109.46732 * 176.48973 * 16 15 14 18 18 O 1.21290 * 119.99956 * 6.06191 * 17 16 15 19 19 N 1.34777 * 119.99602 * 186.06075 * 17 16 15 20 20 C 1.37098 * 119.99358 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00653 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99770 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99786 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00092 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47185 * 89.99817 * 24 22 20 26 26 H 1.48503 * 109.46690 * 209.99748 * 24 22 20 27 27 H 1.48507 * 109.46951 * 329.99392 * 24 22 20 28 28 C 1.48562 * 104.22149 * 320.51573 * 15 14 13 29 29 H 1.09001 * 109.46829 * 299.99549 * 1 2 3 30 30 H 1.08990 * 109.47109 * 59.99855 * 1 2 3 31 31 H 1.08998 * 109.46701 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47150 * 239.99745 * 2 1 3 33 33 H 1.08992 * 109.47688 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46853 * 300.00214 * 3 2 1 35 35 H 1.09002 * 109.47153 * 59.99747 * 3 2 1 36 36 H 1.09002 * 109.47214 * 300.00083 * 5 4 2 37 37 H 1.09001 * 109.47005 * 59.99681 * 5 4 2 38 38 H 1.09002 * 109.46761 * 300.00070 * 6 5 4 39 39 H 1.08992 * 109.47252 * 59.99715 * 6 5 4 40 40 H 1.09000 * 109.47009 * 90.00188 * 10 9 7 41 41 H 1.08998 * 109.47122 * 209.99671 * 10 9 7 42 42 H 1.08995 * 109.47377 * 330.00454 * 10 9 7 43 43 H 1.09007 * 110.32752 * 237.79002 * 13 11 9 44 44 H 1.08995 * 110.32505 * 359.89542 * 13 11 9 45 45 H 1.08999 * 110.41001 * 142.62727 * 14 13 11 46 46 H 1.08991 * 110.41251 * 265.07716 * 14 13 11 47 47 H 1.08998 * 109.47070 * 296.48782 * 16 15 14 48 48 H 1.09002 * 109.46940 * 56.49437 * 16 15 14 49 49 H 0.96994 * 120.00265 * 0.02562 * 19 17 16 50 50 H 0.96998 * 120.00212 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.41216 * 280.70374 * 28 15 14 52 52 H 1.09003 * 110.40964 * 158.26549 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9886 6 6 3.6756 -2.0092 2.2941 7 6 5.0042 -2.6950 2.1064 8 8 5.5683 -2.6411 1.0341 9 7 5.5661 -3.3674 3.1304 10 6 4.8855 -3.4311 4.4261 11 6 6.8575 -4.0347 2.9477 12 1 7.2132 -3.8967 1.9266 13 6 7.8907 -3.4867 3.9535 14 6 8.3062 -4.7051 4.8058 15 7 8.0180 -5.8804 3.9440 16 6 7.8832 -7.1024 4.7482 17 6 7.5071 -8.2543 3.8523 18 8 7.4726 -8.1011 2.6496 19 7 7.2090 -9.4548 4.3876 20 6 6.8674 -10.5029 3.5725 21 1 6.8374 -10.3667 2.5015 22 6 6.5596 -11.7405 4.1243 23 7 6.5965 -11.9063 5.4273 24 14 6.0947 -13.1687 3.0137 25 1 7.3183 -13.9198 2.6349 26 1 5.1622 -14.0725 3.7340 27 1 5.4338 -12.6491 1.7895 28 6 6.7356 -5.5380 3.2767 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1809 -2.0707 0.1986 37 1 4.0200 -0.5874 0.7123 38 1 3.7606 -1.2632 3.0844 39 1 2.9215 -2.7463 2.5699 40 1 4.2323 -4.3034 4.4509 41 1 5.6261 -3.5091 5.2220 42 1 4.2917 -2.5284 4.5694 43 1 8.7544 -3.0814 3.4263 44 1 7.4376 -2.7200 4.5819 45 1 9.3692 -4.6587 5.0424 46 1 7.7140 -4.7495 5.7197 47 1 8.8311 -7.3196 5.2407 48 1 7.1074 -6.9586 5.5002 49 1 7.2363 -9.5772 5.3493 50 1 6.3820 -12.7703 5.8126 51 1 5.8975 -5.7128 3.9514 52 1 6.6159 -6.1189 2.3622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698557267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:04 Heat of formation + Delta-G solvation = -135.857831 kcal Electronic energy + Delta-G solvation = -30068.605705 eV Core-core repulsion = 25874.326298 eV Total energy + Delta-G solvation = -4194.279407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51723 -40.44257 -39.43678 -38.92763 -36.38601 -35.86626 -34.37281 -33.35525 -32.73514 -31.53285 -29.63938 -28.39417 -28.12771 -27.64219 -26.11134 -24.83252 -22.43242 -22.29327 -21.83595 -20.96986 -19.99092 -19.87931 -18.68177 -17.75437 -17.70362 -17.37958 -17.10006 -16.62165 -16.53892 -16.21092 -15.92956 -15.82355 -15.69572 -15.22435 -14.98619 -14.66101 -14.32024 -14.15189 -14.01612 -13.69492 -13.67710 -13.54819 -13.44736 -13.17540 -13.10435 -13.07155 -12.96225 -12.83975 -12.66844 -12.43896 -12.40790 -12.33215 -12.26673 -12.13395 -12.10907 -11.78098 -11.62730 -11.49516 -10.94430 -10.58292 -10.30858 -10.02454 -9.74482 -9.39712 -8.48289 -5.96577 1.35870 1.39844 1.48596 1.52178 1.75196 2.03571 2.27270 2.66543 2.88833 3.18457 3.36517 3.48410 3.64908 3.76167 3.89600 3.95211 4.03687 4.11274 4.14177 4.20394 4.28120 4.28773 4.31601 4.35960 4.43606 4.46407 4.54788 4.59400 4.66790 4.70707 4.75351 4.79008 4.83587 4.90260 4.91311 4.94310 4.96801 4.99481 5.08426 5.16586 5.27256 5.32367 5.38514 5.39953 5.81172 5.91823 6.07832 6.20943 6.29824 6.59484 7.04622 7.11894 7.54777 8.11552 8.68996 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.002069 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.182270 B =13527.829670 C =15048.808678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.172 4.172 4 O -0.394 6.394 5 C 0.081 3.919 6 C -0.126 4.126 7 C 0.513 3.487 8 O -0.588 6.588 9 N -0.604 5.604 10 C 0.064 3.936 11 C 0.139 3.861 12 H 0.078 0.922 13 C -0.119 4.119 14 C 0.033 3.967 15 N -0.509 5.509 16 C 0.050 3.950 17 C 0.437 3.563 18 O -0.619 6.619 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.276 1.276 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.115 0.885 48 H 0.074 0.926 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.048 0.952 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 25.938 2.216 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 C -0.229 4.229 4 O -0.315 6.315 5 C 0.004 3.996 6 C -0.165 4.165 7 C 0.302 3.698 8 O -0.468 6.468 9 N -0.336 5.336 10 C -0.077 4.077 11 C 0.034 3.966 12 H 0.096 0.904 13 C -0.158 4.158 14 C -0.094 4.094 15 N -0.234 5.234 16 C -0.082 4.082 17 C 0.224 3.776 18 O -0.505 6.505 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.193 1.193 27 H -0.201 1.201 28 C -0.091 4.091 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.092 0.908 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.066 0.934 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.822 25.781 0.806 26.954 hybrid contribution -0.480 -1.297 0.074 1.385 sum -8.302 24.484 0.880 25.868 Atomic orbital electron populations 1.21868 0.92359 1.02726 1.03424 1.22314 0.95947 0.92924 0.87504 1.22275 1.01200 0.96050 1.03398 1.87816 1.36398 1.70307 1.36934 1.22049 0.85526 0.95479 0.96592 1.21464 0.93260 1.01790 1.00014 1.21024 0.87419 0.78288 0.83026 1.90698 1.65611 1.62945 1.27573 1.47983 1.21063 1.51442 1.13159 1.22123 0.98393 1.03896 0.83299 1.21650 0.83723 0.90240 1.00969 0.90376 1.22625 0.98308 0.97706 0.97156 1.23295 1.03016 0.88249 0.94836 1.65096 1.29757 1.01978 1.26604 1.21954 1.03354 0.88971 0.93883 1.20834 0.82564 0.84864 0.89313 1.90499 1.58550 1.84092 1.17367 1.41908 1.60630 1.08789 1.09633 1.19612 1.44968 0.89925 0.91747 0.90687 1.25993 0.96834 1.00610 0.97668 1.69658 1.48958 1.26355 1.10890 0.84967 0.78424 0.77408 0.77774 1.19674 1.19301 1.20088 1.23231 0.91178 0.95110 0.99533 0.91667 0.89482 0.92508 0.92387 0.93148 0.90078 0.91623 0.94094 0.93109 0.85229 0.86629 0.92436 0.89305 0.87555 0.90059 0.87942 0.88375 0.91533 0.86707 0.90797 0.76915 0.91260 0.93375 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.56 71.98 0.69 -1.07 16 2 C 0.07 1.08 3.34 30.59 0.10 1.18 16 3 C -0.17 -2.16 9.53 71.98 0.69 -1.47 16 4 O -0.39 -7.55 9.99 -148.98 -1.49 -9.04 16 5 C 0.08 1.63 5.04 71.98 0.36 1.99 16 6 C -0.13 -2.14 4.62 29.85 0.14 -2.00 16 7 C 0.51 12.76 7.67 87.66 0.67 13.44 16 8 O -0.59 -20.08 15.34 -3.04 -0.05 -20.13 16 9 N -0.60 -13.41 2.79 -817.62 -2.28 -15.69 16 10 C 0.06 0.87 8.87 127.77 1.13 2.00 16 11 C 0.14 3.81 3.46 45.89 0.16 3.97 16 12 H 0.08 2.68 6.96 -2.38 -0.02 2.66 16 13 C -0.12 -2.36 6.17 31.49 0.19 -2.17 16 14 C 0.03 0.69 6.49 86.45 0.56 1.26 16 15 N -0.51 -16.47 5.18 -886.01 -4.59 -21.06 16 16 C 0.05 1.69 5.39 85.56 0.46 2.15 16 17 C 0.44 21.04 7.43 87.66 0.65 21.69 16 18 O -0.62 -35.24 14.01 -3.06 -0.04 -35.28 16 19 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 20 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.32 13.05 21.67 0.28 -49.04 16 24 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 C 0.04 1.31 5.18 86.45 0.45 1.75 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.91 7.79 -2.39 -0.02 0.89 16 33 H 0.05 0.70 7.87 -2.39 -0.02 0.68 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.95 8.04 -2.39 -0.02 0.93 16 37 H 0.05 1.07 7.83 -2.39 -0.02 1.05 16 38 H 0.13 1.47 7.40 -2.39 -0.02 1.46 16 39 H 0.12 1.71 8.11 -2.39 -0.02 1.69 16 40 H 0.06 0.85 7.89 -2.39 -0.02 0.83 16 41 H 0.09 0.97 6.84 -2.39 -0.02 0.96 16 42 H 0.11 0.78 6.44 -2.39 -0.02 0.77 16 43 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.10 1.46 6.98 -2.39 -0.02 1.44 16 45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 47 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 48 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 49 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 51 H 0.05 1.53 6.69 -2.39 -0.02 1.51 16 52 H 0.05 2.40 6.53 -2.39 -0.02 2.38 16 Total: -1.00 -77.11 414.22 -0.05 -77.16 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.18 Total: 34.43 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.54 Total: 24.28 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -8.22 Total: -116.87 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -1.58 Total: -64.45 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -77.11 -0.05 -77.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.700 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds