Wall clock time and date at job start Wed Apr 1 2020 00:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00356 * 2 1 4 4 C 1.50697 * 109.47531 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99843 * 359.97438 * 4 3 2 6 6 N 1.34769 * 120.00112 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00079 * 354.93605 * 6 4 3 8 8 C 1.46497 * 120.00396 * 174.93985 * 6 4 3 9 9 C 1.50701 * 109.47394 * 94.76893 * 8 6 4 10 10 O 1.21278 * 119.99958 * 5.02145 * 9 8 6 11 11 N 1.34776 * 120.00305 * 185.02468 * 9 8 6 12 12 C 1.46933 * 120.62982 * 355.75159 * 11 9 8 13 13 C 1.53194 * 108.77454 * 233.61316 * 12 11 9 14 14 C 1.53045 * 109.30931 * 305.36313 * 13 12 11 15 15 C 1.53037 * 109.53853 * 61.36809 * 14 13 12 16 16 H 1.09004 * 109.49674 * 58.61749 * 15 14 13 17 17 C 1.52995 * 109.49596 * 178.67860 * 15 14 13 18 18 C 1.46934 * 120.60612 * 175.77511 * 11 9 8 19 19 H 1.08994 * 109.56236 * 246.19235 * 18 11 9 20 20 C 1.52994 * 109.61400 * 6.62182 * 18 11 9 21 21 N 1.46498 * 109.47668 * 61.93143 * 20 18 11 22 22 C 1.36930 * 120.00227 * 183.86639 * 21 20 18 23 23 H 1.07997 * 120.00366 * 4.99938 * 22 21 20 24 24 C 1.38817 * 120.00158 * 185.00121 * 22 21 20 25 25 N 1.31624 * 120.00057 * 184.83103 * 24 22 21 26 26 Si 1.86804 * 119.99786 * 4.83499 * 24 22 21 27 27 H 1.48496 * 109.46843 * 94.57857 * 26 24 22 28 28 H 1.48502 * 109.46938 * 214.58010 * 26 24 22 29 29 H 1.48497 * 109.46739 * 334.57864 * 26 24 22 30 30 H 1.08998 * 109.47002 * 299.99872 * 1 2 3 31 31 H 1.08997 * 109.46986 * 60.00122 * 1 2 3 32 32 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46686 * 59.99773 * 3 2 1 34 34 H 1.08997 * 109.46796 * 300.00386 * 3 2 1 35 35 H 1.08999 * 109.47106 * 270.00474 * 7 6 4 36 36 H 1.09002 * 109.46827 * 30.00304 * 7 6 4 37 37 H 1.09003 * 109.47438 * 150.00508 * 7 6 4 38 38 H 1.09004 * 109.47042 * 334.76892 * 8 6 4 39 39 H 1.09001 * 109.47816 * 214.77285 * 8 6 4 40 40 H 1.08997 * 109.58540 * 113.81952 * 12 11 9 41 41 H 1.09004 * 109.58481 * 353.39945 * 12 11 9 42 42 H 1.08997 * 109.49354 * 185.41670 * 13 12 11 43 43 H 1.09001 * 109.52615 * 65.33142 * 13 12 11 44 44 H 1.08997 * 109.45894 * 301.34401 * 14 13 12 45 45 H 1.09002 * 109.45749 * 181.38874 * 14 13 12 46 46 H 1.09003 * 109.47244 * 59.93811 * 17 15 14 47 47 H 1.08998 * 109.47634 * 299.93535 * 17 15 14 48 48 H 1.09006 * 109.47408 * 179.97438 * 17 15 14 49 49 H 1.09005 * 109.47450 * 181.93410 * 20 18 11 50 50 H 1.09001 * 109.46888 * 301.92640 * 20 18 11 51 51 H 0.97004 * 119.99619 * 3.85660 * 21 20 18 52 52 H 0.96995 * 119.99419 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2764 2.2967 -0.0002 7 6 3.6504 3.6167 -0.1112 8 6 5.7328 2.1839 0.1111 9 6 6.3441 2.1929 -1.2664 10 8 5.6437 2.3758 -2.2394 11 7 7.6691 1.9976 -1.4169 12 6 8.5446 1.8672 -0.2442 13 6 9.6883 2.8789 -0.3677 14 6 10.3990 2.6780 -1.7082 15 6 9.4124 2.9222 -2.8523 16 1 9.0132 3.9339 -2.7787 17 6 10.1320 2.7534 -4.1919 18 6 8.2651 1.9116 -2.7572 19 1 8.6500 0.9053 -2.9216 20 6 7.2059 2.2375 -3.8121 21 7 6.7311 3.6100 -3.6199 22 6 5.7189 4.1001 -4.4010 23 1 5.2160 3.4514 -5.1029 24 6 5.3392 5.4308 -4.2909 25 7 4.3052 5.8786 -4.9712 26 14 6.2957 6.5858 -3.1771 27 1 7.3226 7.3040 -3.9737 28 1 5.3649 7.5694 -2.5676 29 1 6.9597 5.8022 -2.1046 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.5695 3.8932 -1.1624 36 1 2.6560 3.5857 0.3340 37 1 4.2601 4.3531 0.4123 38 1 5.9875 1.2518 0.6155 39 1 6.1197 3.0254 0.6858 40 1 8.9527 0.8574 -0.2034 41 1 7.9739 2.0697 0.6622 42 1 10.3973 2.7276 0.4462 43 1 9.2866 3.8909 -0.3170 44 1 10.7796 1.6584 -1.7682 45 1 11.2288 3.3803 -1.7880 46 1 10.5310 1.7417 -4.2650 47 1 10.9490 3.4719 -4.2586 48 1 9.4288 2.9270 -5.0065 49 1 7.6413 2.1396 -4.8066 50 1 6.3691 1.5462 -3.7123 51 1 7.1338 4.1716 -2.9391 52 1 4.0402 6.8085 -4.8944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698945059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:29 Heat of formation + Delta-G solvation = -73.227663 kcal Electronic energy + Delta-G solvation = -33143.496117 eV Core-core repulsion = 28951.932558 eV Total energy + Delta-G solvation = -4191.563559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82411 -40.84438 -38.75521 -38.22330 -36.78405 -36.22692 -34.69144 -33.71019 -32.18751 -31.22221 -29.38743 -28.36651 -27.36975 -27.09966 -26.35460 -25.18781 -24.02764 -22.37129 -21.71013 -20.50902 -19.78057 -19.55581 -18.49411 -18.00455 -17.76573 -17.22790 -17.05619 -16.58014 -16.39648 -16.10144 -15.84311 -15.81384 -15.42210 -15.30856 -14.98749 -14.72009 -14.56633 -14.25541 -14.09226 -13.97763 -13.84042 -13.60091 -13.45018 -13.30139 -13.25845 -13.18468 -12.91728 -12.76953 -12.61111 -12.52310 -12.36621 -12.10143 -11.97398 -11.77756 -11.66187 -11.48544 -11.17360 -10.94657 -10.88638 -10.80694 -10.36451 -9.55768 -9.39879 -8.83781 -7.89777 -5.13053 1.28319 1.34632 1.36833 1.42522 1.68995 1.93175 2.22968 2.53204 2.92188 3.39730 3.52315 3.59332 3.78649 3.88835 3.93493 3.96444 4.02230 4.13731 4.18279 4.19442 4.24573 4.31426 4.33487 4.36492 4.48742 4.53622 4.57286 4.57922 4.64421 4.79247 4.82606 4.85349 4.91237 4.95922 4.96526 4.99840 5.11370 5.17565 5.25128 5.28203 5.36619 5.44773 5.55306 5.79450 5.86906 5.96325 6.24159 6.32083 6.63317 7.01752 7.21338 7.55387 7.98735 8.22734 9.34586 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.004854 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.739504 B = 5767.090986 C = 7424.478982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.049 3.951 4 C 0.512 3.488 5 O -0.570 6.570 6 N -0.592 5.592 7 C 0.076 3.924 8 C 0.102 3.898 9 C 0.453 3.547 10 O -0.501 6.501 11 N -0.617 5.617 12 C 0.104 3.896 13 C -0.132 4.132 14 C -0.108 4.108 15 C -0.099 4.099 16 H 0.044 0.956 17 C -0.141 4.141 18 C 0.152 3.848 19 H 0.087 0.913 20 C 0.167 3.833 21 N -0.714 5.714 22 C -0.180 4.180 23 H 0.032 0.968 24 C -0.074 4.074 25 N -0.996 5.996 26 Si 0.958 3.042 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.262 1.262 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.036 0.964 49 H 0.012 0.988 50 H 0.018 0.982 51 H 0.361 0.639 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 -6.937 19.163 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.030 4.030 4 C 0.301 3.699 5 O -0.449 6.449 6 N -0.325 5.325 7 C -0.066 4.066 8 C -0.024 4.024 9 C 0.238 3.762 10 O -0.373 6.373 11 N -0.354 5.354 12 C -0.018 4.018 13 C -0.170 4.170 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.063 0.937 17 C -0.199 4.199 18 C 0.048 3.952 19 H 0.105 0.895 20 C 0.040 3.960 21 N -0.359 5.359 22 C -0.312 4.312 23 H 0.050 0.950 24 C -0.263 4.263 25 N -0.650 5.650 26 Si 0.787 3.213 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.187 1.187 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.036 0.964 51 H 0.195 0.805 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.947 -7.613 18.495 21.173 hybrid contribution -0.300 1.225 -0.346 1.308 sum 6.647 -6.388 18.150 20.357 Atomic orbital electron populations 1.23054 0.78217 1.04333 1.01555 1.87941 1.22272 1.26421 1.95747 1.22348 0.89353 0.86799 1.04547 1.20841 0.90278 0.83614 0.75173 1.90654 1.75586 1.27893 1.50731 1.47407 1.05921 1.07210 1.71970 1.22023 1.00247 0.82534 1.01816 1.21518 0.80292 1.06348 0.94255 1.21741 0.83128 0.78506 0.92831 1.91094 1.61655 1.44619 1.39908 1.48158 1.06512 1.73559 1.07214 1.21998 0.91997 1.00575 0.87198 1.21938 0.97669 0.98762 0.98609 1.21572 0.97026 1.03104 0.92807 1.21469 0.95234 0.98005 0.97193 0.93734 1.21756 0.99807 1.02694 0.95594 1.21436 0.92787 0.99160 0.81807 0.89505 1.20847 0.93618 0.86896 0.94618 1.42417 1.41272 1.11096 1.41161 1.18817 1.07504 0.92847 1.12066 0.95002 1.25284 0.99976 0.98401 1.02653 1.69922 1.30552 1.15192 1.49305 0.85343 0.77894 0.78841 0.79172 1.21623 1.21944 1.18736 0.91457 0.93273 0.88256 0.86179 0.89735 0.94916 0.87565 0.88856 0.86661 0.84818 0.89756 0.88268 0.87539 0.93042 0.90087 0.90676 0.90861 0.91517 0.94449 0.97016 0.96374 0.80469 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.69 16 2 O -0.40 -11.84 10.24 -129.94 -1.33 -13.17 16 3 C 0.05 1.26 4.87 71.23 0.35 1.60 16 4 C 0.51 17.03 7.74 87.66 0.68 17.71 16 5 O -0.57 -23.54 16.05 16.01 0.26 -23.29 16 6 N -0.59 -17.52 2.39 -851.13 -2.03 -19.55 16 7 C 0.08 1.95 10.22 127.77 1.31 3.25 16 8 C 0.10 2.76 4.30 85.63 0.37 3.13 16 9 C 0.45 16.19 7.21 87.66 0.63 16.82 16 10 O -0.50 -23.81 9.97 -3.02 -0.03 -23.84 16 11 N -0.62 -18.03 2.93 -795.01 -2.33 -20.36 16 12 C 0.10 1.86 6.30 86.36 0.54 2.40 16 13 C -0.13 -2.09 6.08 30.67 0.19 -1.90 16 14 C -0.11 -1.95 5.17 30.62 0.16 -1.79 16 15 C -0.10 -2.71 2.21 -10.72 -0.02 -2.73 16 16 H 0.04 1.52 6.50 -2.39 -0.02 1.51 16 17 C -0.14 -3.60 8.96 71.98 0.65 -2.96 16 18 C 0.15 4.80 2.64 44.97 0.12 4.92 16 19 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 20 C 0.17 7.34 4.76 86.38 0.41 7.75 16 21 N -0.71 -36.08 2.83 -343.46 -0.97 -37.05 16 22 C -0.18 -11.15 9.75 84.04 0.82 -10.33 16 23 H 0.03 2.25 8.06 -2.91 -0.02 2.22 16 24 C -0.07 -4.60 5.50 84.86 0.47 -4.13 16 25 N -1.00 -66.87 13.97 21.65 0.30 -66.57 16 26 Si 0.96 47.81 28.01 68.60 1.92 49.73 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.26 -11.81 6.15 99.48 0.61 -11.20 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.12 2.02 7.58 -2.38 -0.02 2.00 16 34 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.85 6.44 -2.39 -0.02 1.84 16 37 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 38 H 0.12 2.90 7.09 -2.39 -0.02 2.89 16 39 H 0.13 2.56 7.58 -2.39 -0.02 2.55 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.35 6.00 -2.38 -0.01 1.34 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.04 1.18 6.67 -2.38 -0.02 1.17 16 49 H 0.01 0.55 6.73 -2.38 -0.02 0.53 16 50 H 0.02 0.95 6.25 -2.39 -0.01 0.93 16 51 H 0.36 17.48 3.63 -92.71 -0.34 17.15 16 52 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -92.43 397.99 4.17 -88.26 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.48 Total: 30.39 kcal Atomic # 6 Polarization: 27.54 SS G_CDS: 7.91 Total: 35.45 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -5.03 Total: -143.53 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -1.10 Total: -60.30 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.92 Total: 49.73 kcal Total: -92.43 4.17 -88.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698945059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -92.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds