Wall clock time and date at job start Wed Apr 1 2020 00:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46965 * 2 1 4 4 O 1.21278 * 120.00048 * 359.97438 * 3 2 1 5 5 N 1.34769 * 119.99920 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63280 * 359.97351 * 5 3 2 7 7 C 1.53194 * 108.77805 * 233.63154 * 6 5 3 8 8 C 1.53034 * 109.31341 * 305.36662 * 7 6 5 9 9 C 1.53361 * 109.61080 * 61.36909 * 8 7 6 10 10 H 1.09001 * 109.47160 * 58.54932 * 9 8 7 11 11 C 1.50700 * 109.68574 * 178.74691 * 9 8 7 12 12 O 1.21284 * 119.99701 * 17.32571 * 11 9 8 13 13 N 1.34774 * 119.99616 * 197.31963 * 11 9 8 14 14 C 1.46492 * 120.00393 * 4.38017 * 13 11 9 15 15 C 1.53001 * 109.47392 * 84.07604 * 14 13 11 16 16 O 1.42901 * 109.46913 * 64.99920 * 15 14 13 17 17 C 1.46508 * 119.99673 * 184.37467 * 13 11 9 18 18 C 1.53007 * 109.46909 * 90.00093 * 17 13 11 19 19 N 1.46491 * 109.46872 * 180.02562 * 18 17 13 20 20 C 1.36940 * 119.99818 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00025 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00262 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00183 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47415 * 60.00021 * 24 22 20 26 26 H 1.48501 * 109.47052 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47242 * 299.99478 * 24 22 20 28 28 C 1.46929 * 120.63341 * 179.97438 * 5 3 2 29 29 H 1.08993 * 109.47189 * 60.00466 * 1 2 3 30 30 H 1.09008 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47349 * 299.99952 * 1 2 3 32 32 H 1.08993 * 109.47348 * 239.99582 * 2 1 3 33 33 H 1.09001 * 109.46926 * 119.99518 * 2 1 3 34 34 H 1.09000 * 109.58838 * 353.41835 * 6 5 3 35 35 H 1.09004 * 109.58809 * 113.84532 * 6 5 3 36 36 H 1.09000 * 109.49319 * 65.31353 * 7 6 5 37 37 H 1.08993 * 109.49854 * 185.37706 * 7 6 5 38 38 H 1.08997 * 109.46603 * 181.38413 * 8 7 6 39 39 H 1.08999 * 109.46036 * 301.35857 * 8 7 6 40 40 H 1.09006 * 109.47402 * 204.07991 * 14 13 11 41 41 H 1.09005 * 109.46985 * 324.07219 * 14 13 11 42 42 H 1.09003 * 109.47152 * 185.00061 * 15 14 13 43 43 H 1.08997 * 109.47043 * 304.99882 * 15 14 13 44 44 H 0.96706 * 113.99654 * 180.02562 * 16 15 14 45 45 H 1.08998 * 109.46896 * 209.99810 * 17 13 11 46 46 H 1.09001 * 109.46969 * 330.01005 * 17 13 11 47 47 H 1.08997 * 109.46866 * 300.00326 * 18 17 13 48 48 H 1.09003 * 109.46651 * 59.99889 * 18 17 13 49 49 H 0.96997 * 120.00794 * 0.02562 * 19 18 17 50 50 H 0.97009 * 120.00027 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.58852 * 246.16134 * 28 5 3 52 52 H 1.09006 * 109.58079 * 6.44160 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 4.3244 0.5610 -0.0005 7 6 5.2968 0.7562 1.1670 8 6 5.9311 2.1455 1.0705 9 6 4.8389 3.2178 1.1672 10 1 4.3024 3.1061 2.1094 11 6 5.4648 4.5872 1.1032 12 8 6.5952 4.7182 0.6837 13 7 4.7684 5.6661 1.5122 14 6 3.4405 5.4983 2.1076 15 6 3.5858 5.1848 3.5981 16 8 4.1610 6.3088 4.2674 17 6 5.3394 7.0069 1.3612 18 6 4.9382 7.5819 0.0012 19 7 5.5097 8.9222 -0.1500 20 6 5.2830 9.6380 -1.2952 21 1 4.6833 9.2141 -2.0871 22 6 5.8240 10.9082 -1.4384 23 7 6.5545 11.4250 -0.4731 24 14 5.5154 11.8843 -3.0009 25 1 4.0555 12.0947 -3.1729 26 1 6.1968 13.2003 -2.9052 27 1 6.0482 11.1342 -4.1665 28 6 3.8623 3.0469 -0.0011 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7969 -0.3855 0.1177 35 1 4.8771 0.5588 -0.9400 36 1 4.7562 0.6677 2.1093 37 1 6.0765 -0.0042 1.1221 38 1 6.6419 2.2778 1.8862 39 1 6.4504 2.2422 0.1171 40 1 2.8679 6.4176 1.9838 41 1 2.9214 4.6776 1.6126 42 1 2.6043 4.9726 4.0222 43 1 4.2320 4.3164 3.7254 44 1 4.2829 6.1803 5.2181 45 1 4.9633 7.6533 2.1542 46 1 6.4260 6.9482 1.4246 47 1 5.3142 6.9354 -0.7917 48 1 3.8516 7.6404 -0.0622 49 1 6.0486 9.3028 0.5610 50 1 6.9329 12.3126 -0.5732 51 1 4.3773 3.2471 -0.9406 52 1 3.0296 3.7408 0.1142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700027719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:37 Heat of formation + Delta-G solvation = -140.516163 kcal Electronic energy + Delta-G solvation = -31470.997254 eV Core-core repulsion = 27276.515846 eV Total energy + Delta-G solvation = -4194.481408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87748 -40.75776 -38.46698 -38.04837 -37.12966 -35.97503 -34.42791 -33.53632 -33.39020 -32.25210 -30.73873 -29.02412 -27.04790 -26.27467 -25.12383 -24.38387 -23.79342 -23.32653 -21.90843 -20.14930 -19.82487 -19.23089 -18.73114 -18.32241 -17.74986 -17.54949 -17.04781 -16.71691 -16.55741 -16.25838 -15.66430 -15.57154 -15.40678 -15.27070 -15.07708 -15.00500 -14.72313 -14.56612 -14.30507 -14.07327 -13.87363 -13.71731 -13.34760 -13.11258 -13.03918 -12.92177 -12.79238 -12.67559 -12.58381 -12.47201 -12.22906 -12.19642 -11.99361 -11.96598 -11.91415 -11.87942 -11.67080 -11.05723 -11.01626 -10.93208 -10.70254 -9.79978 -9.72756 -9.11281 -8.00412 -5.32276 1.36450 1.43193 1.47937 1.54117 1.64542 1.79932 2.03215 2.53109 3.28907 3.30993 3.33715 3.46742 3.67863 3.77064 3.92235 4.00720 4.02869 4.04358 4.10570 4.18732 4.19199 4.24319 4.28846 4.31120 4.33252 4.45820 4.51863 4.57441 4.57753 4.64547 4.70164 4.79120 4.85106 4.88982 4.97732 5.01769 5.02609 5.08500 5.10267 5.12038 5.34126 5.37393 5.38978 5.45574 5.48233 6.20216 6.32101 6.39198 6.91085 7.05504 7.15660 7.26027 7.96612 8.23383 9.22838 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011885 B = 0.002697 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.415131 B =10378.380822 C =10989.492253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.505 3.495 4 O -0.587 6.587 5 N -0.609 5.609 6 C 0.098 3.902 7 C -0.124 4.124 8 C -0.103 4.103 9 C -0.106 4.106 10 H 0.116 0.884 11 C 0.511 3.489 12 O -0.576 6.576 13 N -0.595 5.595 14 C 0.096 3.904 15 C 0.063 3.937 16 O -0.590 6.590 17 C 0.132 3.868 18 C 0.151 3.849 19 N -0.742 5.742 20 C -0.255 4.255 21 H 0.072 0.928 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.981 3.019 25 H -0.274 1.274 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.123 3.877 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.396 0.604 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.001 0.999 48 H 0.024 0.976 49 H 0.375 0.625 50 H 0.255 0.745 51 H 0.058 0.942 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -33.272 9.574 36.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.296 3.704 4 O -0.467 6.467 5 N -0.342 5.342 6 C -0.024 4.024 7 C -0.162 4.162 8 C -0.141 4.141 9 C -0.128 4.128 10 H 0.133 0.867 11 C 0.300 3.700 12 O -0.455 6.455 13 N -0.326 5.326 14 C -0.026 4.026 15 C -0.016 4.016 16 O -0.398 6.398 17 C 0.008 3.992 18 C 0.023 3.977 19 N -0.385 5.385 20 C -0.386 4.386 21 H 0.090 0.910 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.809 3.191 25 H -0.200 1.200 26 H -0.215 1.215 27 H -0.205 1.205 28 C -0.001 4.001 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.245 0.755 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.019 0.981 48 H 0.041 0.959 49 H 0.207 0.793 50 H 0.063 0.937 51 H 0.077 0.923 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.924 -32.464 8.593 35.018 hybrid contribution 0.452 1.398 -0.100 1.473 sum -9.472 -31.066 8.493 33.570 Atomic orbital electron populations 1.21558 0.93781 1.02627 1.01733 1.21749 0.97833 0.91037 1.06796 1.21682 0.81076 0.93364 0.74304 1.90703 1.55906 1.48388 1.51718 1.48237 1.06284 1.06548 1.73091 1.22164 0.90862 0.89720 0.99615 1.21925 0.99431 0.95595 0.99219 1.21453 0.95916 0.93815 1.02925 1.21758 0.98505 0.90802 1.01720 0.86654 1.21195 0.85453 0.87122 0.76278 1.90703 1.20407 1.86871 1.47559 1.47861 1.18890 1.05540 1.60326 1.22067 0.83025 1.04513 0.93021 1.22708 0.98743 0.88501 0.91628 1.86550 1.85548 1.40749 1.26997 1.21221 0.98471 0.82985 0.96550 1.20930 0.95729 0.85721 0.95301 1.42369 1.62054 1.14580 1.19506 1.19554 1.26312 0.97325 0.95445 0.91008 1.25673 1.00453 0.98674 1.01745 1.69829 1.39740 1.17516 1.34666 0.85113 0.77879 0.77433 0.78715 1.20007 1.21485 1.20461 1.21272 0.96784 0.85272 0.96793 0.94068 0.89528 0.93439 0.86443 0.85652 0.85608 0.90644 0.89986 0.87617 0.91549 0.92330 0.89735 0.87370 0.89736 0.92609 0.75467 0.89556 0.92331 0.98090 0.95853 0.79287 0.93678 0.92329 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.20 71.98 0.66 -0.81 16 2 C -0.13 -1.00 4.77 29.85 0.14 -0.86 16 3 C 0.50 8.64 7.70 87.66 0.67 9.32 16 4 O -0.59 -15.81 15.39 -3.02 -0.05 -15.86 16 5 N -0.61 -9.18 2.97 -818.82 -2.43 -11.61 16 6 C 0.10 0.70 6.34 86.36 0.55 1.25 16 7 C -0.12 -0.92 6.08 30.67 0.19 -0.74 16 8 C -0.10 -1.75 4.60 30.73 0.14 -1.61 16 9 C -0.11 -2.17 1.84 -11.34 -0.02 -2.19 16 10 H 0.12 1.86 5.91 -2.39 -0.01 1.84 16 11 C 0.51 15.95 6.82 87.66 0.60 16.54 16 12 O -0.58 -23.40 15.61 -3.04 -0.05 -23.45 16 13 N -0.59 -18.58 2.43 -821.79 -2.00 -20.58 16 14 C 0.10 2.25 5.43 86.38 0.47 2.72 16 15 C 0.06 1.10 7.12 71.98 0.51 1.61 16 16 O -0.59 -12.92 13.19 -148.98 -1.97 -14.88 16 17 C 0.13 5.24 5.49 86.38 0.47 5.71 16 18 C 0.15 7.13 6.58 86.38 0.57 7.70 16 19 N -0.74 -42.31 5.60 -343.46 -1.92 -44.24 16 20 C -0.25 -15.54 9.99 84.03 0.84 -14.70 16 21 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 22 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -62.28 13.06 21.65 0.28 -62.00 16 24 Si 0.98 48.56 29.55 68.60 2.03 50.59 16 25 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 C 0.12 2.64 5.48 86.37 0.47 3.11 16 29 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 30 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.05 0.64 8.10 -2.39 -0.02 0.62 16 32 H 0.12 0.36 7.94 -2.39 -0.02 0.35 16 33 H 0.13 0.18 7.69 -2.39 -0.02 0.16 16 34 H 0.13 0.01 5.93 -2.39 -0.01 0.00 16 35 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.24 7.97 -2.39 -0.02 1.22 16 40 H 0.08 2.18 8.03 -2.38 -0.02 2.16 16 41 H 0.11 2.21 4.90 -2.38 -0.01 2.19 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.06 0.84 6.96 -2.39 -0.02 0.83 16 44 H 0.40 4.83 9.12 -74.05 -0.68 4.15 16 45 H 0.09 3.40 7.69 -2.39 -0.02 3.38 16 46 H 0.06 2.61 7.37 -2.39 -0.02 2.60 16 47 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.38 22.41 7.67 -92.71 -0.71 21.70 16 50 H 0.25 15.71 8.31 -92.70 -0.77 14.94 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.08 2.10 5.09 -2.38 -0.01 2.08 16 Total: -1.00 -87.91 409.97 0.18 -87.74 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.45 Total: 31.23 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.74 Total: 23.07 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -6.07 Total: -138.43 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -2.06 Total: -54.19 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -87.91 0.18 -87.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700027719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.781 kcal (2) G-P(sol) polarization free energy of solvation -87.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds