Wall clock time and date at job start Wed Apr 1 2020 00:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47215 * 2 1 4 4 O 1.21287 * 119.99758 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00276 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63053 * 355.95737 * 5 3 2 7 7 C 1.52758 * 109.00898 * 233.58471 * 6 5 3 8 8 C 1.53038 * 109.38412 * 305.58636 * 7 6 5 9 9 C 1.53041 * 109.53652 * 61.23765 * 8 7 6 10 10 C 1.46923 * 120.62935 * 176.23523 * 5 3 2 11 11 H 1.08998 * 109.58730 * 246.15598 * 10 5 3 12 12 C 1.50693 * 109.59070 * 6.58341 * 10 5 3 13 13 O 1.21282 * 120.00112 * 65.61675 * 12 10 5 14 14 N 1.34774 * 120.00116 * 245.62141 * 12 10 5 15 15 C 1.46502 * 120.00015 * 4.71313 * 14 12 10 16 16 C 1.53001 * 109.47360 * 84.45428 * 15 14 12 17 17 O 1.42896 * 109.47062 * 64.99971 * 16 15 14 18 18 C 1.46506 * 120.00197 * 184.71152 * 14 12 10 19 19 C 1.52994 * 109.46980 * 90.00076 * 18 14 12 20 20 N 1.46506 * 109.46980 * 179.97438 * 19 18 14 21 21 C 1.36936 * 119.99826 * 179.97438 * 20 19 18 22 22 H 1.07992 * 120.00271 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99801 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00117 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00157 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47215 * 89.99517 * 25 23 21 27 27 H 1.48504 * 109.47251 * 209.99699 * 25 23 21 28 28 H 1.48501 * 109.47130 * 329.99613 * 25 23 21 29 29 H 1.08997 * 109.46866 * 60.00599 * 1 2 3 30 30 H 1.09005 * 109.46675 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47364 * 300.00118 * 1 2 3 32 32 H 1.09002 * 109.47232 * 239.99516 * 2 1 3 33 33 H 1.09006 * 109.47199 * 119.99899 * 2 1 3 34 34 H 1.09005 * 109.58530 * 353.41655 * 6 5 3 35 35 H 1.08996 * 109.58683 * 113.83817 * 6 5 3 36 36 H 1.08997 * 109.56695 * 185.55357 * 7 6 5 37 37 H 1.09004 * 109.36374 * 65.49749 * 7 6 5 38 38 H 1.08997 * 109.46009 * 301.22036 * 8 7 6 39 39 H 1.08993 * 109.45371 * 181.25232 * 8 7 6 40 40 H 1.09000 * 109.49679 * 178.68490 * 9 8 7 41 41 H 1.09000 * 109.52445 * 58.60654 * 9 8 7 42 42 H 1.08999 * 109.47085 * 204.45768 * 15 14 12 43 43 H 1.09006 * 109.46660 * 324.45445 * 15 14 12 44 44 H 1.09003 * 109.46788 * 185.00538 * 16 15 14 45 45 H 1.09002 * 109.46818 * 304.99669 * 16 15 14 46 46 H 0.96701 * 113.99528 * 180.02562 * 17 16 15 47 47 H 1.09008 * 109.46831 * 210.00128 * 18 14 12 48 48 H 1.08997 * 109.46901 * 329.99804 * 18 14 12 49 49 H 1.09000 * 109.47326 * 299.99377 * 19 18 14 50 50 H 1.08997 * 109.47525 * 60.00111 * 19 18 14 51 51 H 0.97001 * 119.99871 * 0.02562 * 20 19 18 52 52 H 0.96994 * 120.00403 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3238 0.5641 0.0902 7 6 5.2813 0.8345 1.2493 8 6 5.9175 2.2149 1.0712 9 6 4.8255 3.2871 1.0842 10 6 3.8628 3.0442 -0.0825 11 1 4.3900 3.1837 -1.0263 12 6 2.7105 4.0114 0.0036 13 8 2.0616 4.0922 1.0250 14 7 2.4009 4.7866 -1.0545 15 6 3.1168 4.6168 -2.3214 16 6 2.4670 3.4904 -3.1275 17 8 1.1386 3.8706 -3.4920 18 6 1.3484 5.7990 -0.9379 19 6 1.9619 7.1213 -0.4735 20 7 0.9095 8.1339 -0.3575 21 6 1.2233 9.4043 0.0458 22 1 2.2465 9.6600 0.2780 23 6 0.2260 10.3636 0.1563 24 7 -1.0211 10.0522 -0.1272 25 14 0.6540 12.0969 0.7058 26 1 0.9768 12.9273 -0.4823 27 1 -0.5036 12.6886 1.4236 28 1 1.8289 12.0526 1.6128 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7943 -0.3723 0.2664 35 1 4.8892 0.4971 -0.8392 36 1 6.0616 0.0735 1.2634 37 1 4.7288 0.8070 2.1885 38 1 6.4493 2.2497 0.1204 39 1 6.6176 2.3998 1.8858 40 1 5.2813 4.2718 0.9807 41 1 4.2771 3.2372 2.0248 42 1 3.0713 5.5447 -2.8916 43 1 4.1580 4.3651 -2.1194 44 1 3.0518 3.3042 -4.0283 45 1 2.4326 2.5841 -2.5229 46 1 0.6653 3.2021 -4.0060 47 1 0.8713 5.9405 -1.9078 48 1 0.6052 5.4685 -0.2123 49 1 2.4389 6.9798 0.4963 50 1 2.7051 7.4518 -1.1992 51 1 -0.0096 7.9042 -0.5657 52 1 -1.7179 10.7226 -0.0504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700028065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:13 Heat of formation + Delta-G solvation = -92.757765 kcal Electronic energy + Delta-G solvation = -32579.399783 eV Core-core repulsion = 28386.989335 eV Total energy + Delta-G solvation = -4192.410448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.14869 -38.85302 -37.62645 -36.95661 -35.33638 -34.13836 -33.44371 -32.77718 -31.77197 -31.05755 -29.32659 -27.46855 -26.21333 -24.45309 -24.22674 -23.21123 -22.79193 -21.30890 -21.02397 -19.54509 -18.57271 -17.85644 -17.29898 -17.02160 -16.50328 -16.22896 -15.84627 -15.76535 -14.91372 -14.60787 -14.53193 -14.48835 -14.19011 -13.88297 -13.86036 -13.77394 -13.32411 -13.16268 -13.10280 -13.00166 -12.69505 -12.52437 -12.34368 -12.24490 -11.89893 -11.74933 -11.47732 -11.43325 -11.31762 -11.16201 -11.02513 -10.98639 -10.80271 -10.76286 -10.41677 -10.07336 -10.00127 -9.62758 -9.50381 -9.22325 -8.85265 -8.73692 -8.12900 -6.77892 -5.62790 -2.91213 2.44019 2.54247 3.27191 3.39795 3.52283 3.56608 3.59322 4.15619 4.19363 4.34641 4.50502 4.53367 4.68238 4.71153 4.73348 4.78801 4.82957 4.85044 5.01220 5.07520 5.09684 5.13685 5.23184 5.28107 5.37303 5.42276 5.50255 5.52427 5.59510 5.68178 5.69374 5.74081 5.75213 5.75815 5.99580 6.06428 6.08774 6.16821 6.23536 6.26965 6.48278 6.84436 6.98901 7.15123 7.18823 7.59110 7.81582 7.86715 8.08966 8.55707 8.74937 9.66223 10.25484 10.60860 11.60327 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003040 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.312823 B = 9208.060890 C = 9816.469257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.496 3.504 4 O -0.482 6.482 5 N -0.609 5.609 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.122 3.878 11 H 0.087 0.913 12 C 0.534 3.466 13 O -0.513 6.513 14 N -0.596 5.596 15 C 0.106 3.894 16 C 0.062 3.938 17 O -0.556 6.556 18 C 0.121 3.879 19 C 0.143 3.857 20 N -0.729 5.729 21 C -0.234 4.234 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.373 0.627 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.018 0.982 50 H 0.014 0.986 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.479 -28.671 -5.329 33.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.283 3.717 4 O -0.354 6.354 5 N -0.347 5.347 6 C -0.012 4.012 7 C -0.176 4.176 8 C -0.154 4.154 9 C -0.164 4.164 10 C 0.016 3.984 11 H 0.104 0.896 12 C 0.321 3.679 13 O -0.387 6.387 14 N -0.330 5.330 15 C -0.018 4.018 16 C -0.017 4.017 17 O -0.360 6.360 18 C -0.001 4.001 19 C 0.015 3.985 20 N -0.374 5.374 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.212 4.212 24 N -0.582 5.582 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.219 0.781 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.036 0.964 50 H 0.032 0.968 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.903 -27.428 -4.369 31.519 hybrid contribution 0.034 0.255 -0.191 0.321 sum 14.937 -27.172 -4.561 31.341 Atomic orbital electron populations 1.21539 0.92803 1.01375 1.03796 1.21627 0.98772 0.93683 1.03652 1.20967 0.81726 0.92295 0.76685 1.90925 1.53894 1.44454 1.46172 1.48065 1.05766 1.05631 1.75198 1.21657 0.91134 0.89470 0.98923 1.21875 0.98872 0.97855 0.99034 1.21500 0.97412 0.94062 1.02445 1.21845 0.96130 0.99638 0.98750 1.21375 0.94674 0.82224 1.00156 0.89558 1.19587 0.83875 0.80392 0.84026 1.90703 1.50082 1.67114 1.30798 1.47535 1.38341 1.37082 1.10077 1.21666 0.94736 0.99836 0.85565 1.22652 0.84543 0.97347 0.97172 1.86616 1.26811 1.46284 1.76309 1.21549 0.89347 0.86648 1.02558 1.20936 0.92306 0.88086 0.97212 1.42223 1.06034 1.07477 1.81658 1.19216 0.93554 0.86850 1.36930 0.91306 1.24745 0.95392 0.98302 1.02752 1.69674 0.99430 1.33593 1.55527 0.86170 0.76985 0.84853 0.78090 1.21807 1.21794 1.20828 0.91921 0.92235 0.91716 0.89317 0.89246 0.89460 0.91260 0.90477 0.91188 0.91618 0.91078 0.90269 0.90043 0.88942 0.89684 0.93411 0.94160 0.78051 0.90321 0.89971 0.96415 0.96815 0.78219 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.14 -1.11 4.80 -27.88 -0.13 -1.25 16 3 C 0.50 6.17 7.15 -10.99 -0.08 6.09 16 4 O -0.48 -8.59 11.51 -19.28 -0.22 -8.81 16 5 N -0.61 -6.13 2.98 -166.80 -0.50 -6.63 16 6 C 0.11 0.62 6.30 -3.93 -0.02 0.60 16 7 C -0.14 -0.77 6.06 -26.84 -0.16 -0.93 16 8 C -0.12 -0.78 5.89 -26.69 -0.16 -0.93 16 9 C -0.13 -1.32 5.29 -26.61 -0.14 -1.46 16 10 C 0.12 1.43 2.83 -68.76 -0.19 1.23 16 11 H 0.09 0.80 5.41 -51.93 -0.28 0.52 16 12 C 0.53 9.18 4.19 -10.99 -0.05 9.14 16 13 O -0.51 -11.39 14.06 -19.27 -0.27 -11.66 16 14 N -0.60 -10.03 2.43 -173.68 -0.42 -10.45 16 15 C 0.11 1.30 5.46 -4.04 -0.02 1.28 16 16 C 0.06 0.67 7.35 37.16 0.27 0.94 16 17 O -0.56 -7.26 13.12 -35.23 -0.46 -7.72 16 18 C 0.12 2.54 5.47 -4.04 -0.02 2.51 16 19 C 0.14 3.39 6.58 -4.04 -0.03 3.36 16 20 N -0.73 -20.75 5.60 -59.91 -0.34 -21.09 16 21 C -0.23 -7.12 9.99 -15.06 -0.15 -7.27 16 22 H 0.07 2.03 7.83 -52.49 -0.41 1.61 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 24 N -0.93 -30.08 13.06 55.49 0.72 -29.35 16 25 Si 0.91 23.69 29.55 -169.99 -5.02 18.67 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.09 0.57 7.52 -51.93 -0.39 0.18 16 34 H 0.09 0.34 5.96 -51.93 -0.31 0.03 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.08 7.86 -51.93 -0.41 0.67 16 42 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 43 H 0.09 0.77 5.96 -51.93 -0.31 0.46 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.04 0.45 7.58 -51.93 -0.39 0.05 16 46 H 0.37 3.21 9.12 45.56 0.42 3.62 16 47 H 0.08 1.64 7.65 -51.92 -0.40 1.25 16 48 H 0.08 1.98 7.36 -51.93 -0.38 1.60 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.38 11.46 7.67 -40.82 -0.31 11.15 16 52 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 407.68 15.07 6.14 6.14 Total: -1.00 -40.89 407.68 -9.23 -50.12 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.22 Total: 9.01 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -0.64 Total: 11.77 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -0.53 Total: -67.52 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.96 Total: -28.19 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.02 Total: 18.67 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -40.89 -9.23 -50.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700028065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.637 kcal (2) G-P(sol) polarization free energy of solvation -40.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds