Wall clock time and date at job start Wed Apr 1 2020 00:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47215 * 2 1 4 4 O 1.21287 * 119.99758 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00276 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63053 * 355.95737 * 5 3 2 7 7 C 1.52758 * 109.00898 * 233.58471 * 6 5 3 8 8 C 1.53038 * 109.38412 * 305.58636 * 7 6 5 9 9 C 1.53041 * 109.53652 * 61.23765 * 8 7 6 10 10 C 1.46923 * 120.62935 * 176.23523 * 5 3 2 11 11 H 1.08998 * 109.58730 * 246.15598 * 10 5 3 12 12 C 1.50693 * 109.59070 * 6.58341 * 10 5 3 13 13 O 1.21282 * 120.00112 * 65.61675 * 12 10 5 14 14 N 1.34774 * 120.00116 * 245.62141 * 12 10 5 15 15 C 1.46502 * 120.00015 * 4.71313 * 14 12 10 16 16 C 1.53001 * 109.47360 * 84.45428 * 15 14 12 17 17 O 1.42896 * 109.47062 * 64.99971 * 16 15 14 18 18 C 1.46506 * 120.00197 * 184.71152 * 14 12 10 19 19 C 1.52994 * 109.46980 * 90.00076 * 18 14 12 20 20 N 1.46506 * 109.46980 * 179.97438 * 19 18 14 21 21 C 1.36936 * 119.99826 * 179.97438 * 20 19 18 22 22 H 1.07992 * 120.00271 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99801 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00117 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00157 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47215 * 89.99517 * 25 23 21 27 27 H 1.48504 * 109.47251 * 209.99699 * 25 23 21 28 28 H 1.48501 * 109.47130 * 329.99613 * 25 23 21 29 29 H 1.08997 * 109.46866 * 60.00599 * 1 2 3 30 30 H 1.09005 * 109.46675 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47364 * 300.00118 * 1 2 3 32 32 H 1.09002 * 109.47232 * 239.99516 * 2 1 3 33 33 H 1.09006 * 109.47199 * 119.99899 * 2 1 3 34 34 H 1.09005 * 109.58530 * 353.41655 * 6 5 3 35 35 H 1.08996 * 109.58683 * 113.83817 * 6 5 3 36 36 H 1.08997 * 109.56695 * 185.55357 * 7 6 5 37 37 H 1.09004 * 109.36374 * 65.49749 * 7 6 5 38 38 H 1.08997 * 109.46009 * 301.22036 * 8 7 6 39 39 H 1.08993 * 109.45371 * 181.25232 * 8 7 6 40 40 H 1.09000 * 109.49679 * 178.68490 * 9 8 7 41 41 H 1.09000 * 109.52445 * 58.60654 * 9 8 7 42 42 H 1.08999 * 109.47085 * 204.45768 * 15 14 12 43 43 H 1.09006 * 109.46660 * 324.45445 * 15 14 12 44 44 H 1.09003 * 109.46788 * 185.00538 * 16 15 14 45 45 H 1.09002 * 109.46818 * 304.99669 * 16 15 14 46 46 H 0.96701 * 113.99528 * 180.02562 * 17 16 15 47 47 H 1.09008 * 109.46831 * 210.00128 * 18 14 12 48 48 H 1.08997 * 109.46901 * 329.99804 * 18 14 12 49 49 H 1.09000 * 109.47326 * 299.99377 * 19 18 14 50 50 H 1.08997 * 109.47525 * 60.00111 * 19 18 14 51 51 H 0.97001 * 119.99871 * 0.02562 * 20 19 18 52 52 H 0.96994 * 120.00403 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3238 0.5641 0.0902 7 6 5.2813 0.8345 1.2493 8 6 5.9175 2.2149 1.0712 9 6 4.8255 3.2871 1.0842 10 6 3.8628 3.0442 -0.0825 11 1 4.3900 3.1837 -1.0263 12 6 2.7105 4.0114 0.0036 13 8 2.0616 4.0922 1.0250 14 7 2.4009 4.7866 -1.0545 15 6 3.1168 4.6168 -2.3214 16 6 2.4670 3.4904 -3.1275 17 8 1.1386 3.8706 -3.4920 18 6 1.3484 5.7990 -0.9379 19 6 1.9619 7.1213 -0.4735 20 7 0.9095 8.1339 -0.3575 21 6 1.2233 9.4043 0.0458 22 1 2.2465 9.6600 0.2780 23 6 0.2260 10.3636 0.1563 24 7 -1.0211 10.0522 -0.1272 25 14 0.6540 12.0969 0.7058 26 1 0.9768 12.9273 -0.4823 27 1 -0.5036 12.6886 1.4236 28 1 1.8289 12.0526 1.6128 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7943 -0.3723 0.2664 35 1 4.8892 0.4971 -0.8392 36 1 6.0616 0.0735 1.2634 37 1 4.7288 0.8070 2.1885 38 1 6.4493 2.2497 0.1204 39 1 6.6176 2.3998 1.8858 40 1 5.2813 4.2718 0.9807 41 1 4.2771 3.2372 2.0248 42 1 3.0713 5.5447 -2.8916 43 1 4.1580 4.3651 -2.1194 44 1 3.0518 3.3042 -4.0283 45 1 2.4326 2.5841 -2.5229 46 1 0.6653 3.2021 -4.0060 47 1 0.8713 5.9405 -1.9078 48 1 0.6052 5.4685 -0.2123 49 1 2.4389 6.9798 0.4963 50 1 2.7051 7.4518 -1.1992 51 1 -0.0096 7.9042 -0.5657 52 1 -1.7179 10.7226 -0.0504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700028065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:12 Heat of formation + Delta-G solvation = -124.846025 kcal Electronic energy + Delta-G solvation = -32580.791235 eV Core-core repulsion = 28386.989335 eV Total energy + Delta-G solvation = -4193.801899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.14098 -40.02214 -38.44489 -38.01878 -37.07417 -35.84854 -34.27569 -33.70277 -33.30325 -32.22211 -30.73107 -28.99316 -27.18586 -25.82752 -25.09517 -24.56961 -23.88256 -23.03436 -21.73323 -20.61831 -19.55210 -19.24509 -18.80458 -18.23656 -17.62025 -17.19126 -17.09233 -16.64614 -16.47976 -15.97022 -15.52972 -15.42652 -15.29879 -15.17050 -15.07277 -14.93161 -14.68742 -14.52235 -14.42372 -14.02905 -13.79637 -13.75372 -13.16783 -13.11300 -13.03934 -12.90928 -12.79506 -12.63353 -12.52083 -12.43067 -12.21530 -12.15413 -12.10217 -11.96917 -11.89616 -11.72389 -11.58561 -11.01474 -10.95040 -10.60931 -10.44624 -9.72749 -9.48453 -9.11139 -7.99543 -5.32102 1.42652 1.47378 1.51382 1.55836 1.66111 2.00362 2.30987 2.53929 3.29694 3.32944 3.34559 3.69926 3.77451 3.83619 3.96153 4.06142 4.07424 4.10985 4.14904 4.16012 4.21357 4.23508 4.27121 4.35841 4.45212 4.49400 4.53107 4.59465 4.64627 4.72551 4.82332 4.84948 4.87430 4.91466 5.00287 5.01700 5.07110 5.08316 5.14158 5.22411 5.30520 5.39339 5.44798 5.51101 5.61962 6.20543 6.38455 6.55223 6.90895 7.20971 7.25456 7.49188 7.96608 8.23628 9.24374 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003040 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.312823 B = 9208.060890 C = 9816.469257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.481 3.519 4 O -0.548 6.548 5 N -0.604 5.604 6 C 0.103 3.897 7 C -0.137 4.137 8 C -0.110 4.110 9 C -0.125 4.125 10 C 0.130 3.870 11 H 0.122 0.878 12 C 0.527 3.473 13 O -0.578 6.578 14 N -0.599 5.599 15 C 0.094 3.906 16 C 0.065 3.935 17 O -0.590 6.590 18 C 0.145 3.855 19 C 0.154 3.846 20 N -0.744 5.744 21 C -0.253 4.253 22 H 0.076 0.924 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.985 3.015 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.270 1.270 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.028 0.972 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.390 0.610 47 H 0.076 0.924 48 H 0.037 0.963 49 H -0.002 1.002 50 H 0.032 0.968 51 H 0.372 0.628 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.318 -31.071 -7.001 37.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.271 3.729 4 O -0.425 6.425 5 N -0.340 5.340 6 C -0.017 4.017 7 C -0.174 4.174 8 C -0.147 4.147 9 C -0.164 4.164 10 C 0.024 3.976 11 H 0.139 0.861 12 C 0.317 3.683 13 O -0.456 6.456 14 N -0.332 5.332 15 C -0.028 4.028 16 C -0.013 4.013 17 O -0.398 6.398 18 C 0.021 3.979 19 C 0.027 3.973 20 N -0.387 5.387 21 C -0.385 4.385 22 H 0.094 0.906 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.812 3.188 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.194 1.194 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.146 0.854 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.144 0.856 44 H 0.108 0.892 45 H 0.056 0.944 46 H 0.239 0.761 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.016 0.984 50 H 0.050 0.950 51 H 0.204 0.796 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.845 -29.904 -6.085 35.866 hybrid contribution -1.152 0.938 0.341 1.524 sum 17.693 -28.966 -5.744 34.425 Atomic orbital electron populations 1.21516 0.94423 1.02387 1.01064 1.21678 0.97264 0.91135 1.06552 1.21855 0.82067 0.93469 0.75516 1.90913 1.55628 1.46577 1.49354 1.48260 1.05971 1.05895 1.73923 1.22106 0.90625 0.88516 1.00484 1.21902 0.99491 0.98015 0.98041 1.21514 0.95971 0.93058 1.04186 1.21867 0.96780 1.01400 0.96350 1.21337 0.92193 0.81989 1.02112 0.86099 1.20615 0.84474 0.80401 0.82775 1.90662 1.52665 1.68984 1.33326 1.47622 1.37460 1.35895 1.12196 1.22120 0.96515 1.00669 0.83496 1.22718 0.83998 0.96109 0.98510 1.86568 1.28418 1.47840 1.76953 1.20944 0.89777 0.86586 1.00611 1.20936 0.91500 0.88445 0.96464 1.42441 1.06411 1.08116 1.81742 1.19638 0.94057 0.87770 1.37017 0.90631 1.25745 0.95185 1.02996 1.02974 1.69860 1.00545 1.35071 1.56625 0.84982 0.76928 0.78916 0.77932 1.20500 1.21846 1.19441 0.93962 0.89123 0.95261 0.85353 0.86844 0.87102 0.87923 0.87094 0.93378 0.88886 0.90534 0.90677 0.94032 0.89525 0.85641 0.89173 0.94366 0.76135 0.90576 0.94465 0.98446 0.95019 0.79637 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.20 71.98 0.66 -1.92 16 2 C -0.13 -1.78 4.80 29.85 0.14 -1.63 16 3 C 0.48 11.82 7.15 87.66 0.63 12.45 16 4 O -0.55 -20.84 11.51 20.69 0.24 -20.60 16 5 N -0.60 -10.93 2.98 -800.03 -2.38 -13.32 16 6 C 0.10 0.68 6.30 86.22 0.54 1.22 16 7 C -0.14 -0.99 6.06 30.53 0.19 -0.80 16 8 C -0.11 -1.10 5.89 30.62 0.18 -0.92 16 9 C -0.13 -2.57 5.29 30.67 0.16 -2.41 16 10 C 0.13 2.89 2.83 44.23 0.12 3.02 16 11 H 0.12 1.80 5.41 -2.39 -0.01 1.78 16 12 C 0.53 19.01 4.19 87.66 0.37 19.38 16 13 O -0.58 -28.12 14.06 20.71 0.29 -27.83 16 14 N -0.60 -20.90 2.43 -821.80 -2.00 -22.90 16 15 C 0.09 2.17 5.46 86.38 0.47 2.64 16 16 C 0.07 1.26 7.35 71.98 0.53 1.79 16 17 O -0.59 -15.30 13.12 -148.98 -1.96 -17.26 16 18 C 0.15 6.55 5.47 86.38 0.47 7.02 16 19 C 0.15 7.69 6.58 86.38 0.57 8.26 16 20 N -0.74 -44.46 5.60 -343.46 -1.92 -46.38 16 21 C -0.25 -15.81 9.99 84.03 0.84 -14.97 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 24 N -0.97 -64.40 13.06 21.65 0.28 -64.11 16 25 Si 0.99 49.33 29.55 68.60 2.03 51.36 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 28 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 29 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.03 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.13 0.81 8.09 -2.39 -0.02 0.80 16 33 H 0.11 1.07 7.52 -2.38 -0.02 1.05 16 34 H 0.11 0.25 5.96 -2.38 -0.01 0.24 16 35 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.17 7.86 -2.39 -0.02 1.16 16 42 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 43 H 0.13 1.81 5.96 -2.38 -0.01 1.80 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.04 0.76 7.58 -2.39 -0.02 0.75 16 46 H 0.39 6.57 9.12 -74.06 -0.68 5.89 16 47 H 0.08 3.41 7.65 -2.38 -0.02 3.40 16 48 H 0.04 1.99 7.36 -2.39 -0.02 1.98 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.37 23.63 7.67 -92.71 -0.71 22.92 16 52 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -99.18 407.68 0.46 -98.72 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.46 Total: 33.55 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 6.34 Total: 28.78 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -6.02 Total: -146.71 kcal Atomic # 8 Polarization: -64.27 SS G_CDS: -1.43 Total: -65.69 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -99.18 0.46 -98.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700028065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.125 kcal (2) G-P(sol) polarization free energy of solvation -99.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds