Wall clock time and date at job start Wed Apr 1 2020 00:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.43909 * 2 1 4 4 C 1.54893 * 110.48855 * 237.31188 * 2 1 3 5 5 C 1.54891 * 102.74968 * 203.38377 * 4 2 1 6 6 C 1.54271 * 104.19524 * 37.94303 * 5 4 2 7 7 H 1.08997 * 110.07535 * 95.70128 * 6 5 4 8 8 C 1.50699 * 110.02864 * 217.10575 * 6 5 4 9 9 O 1.21282 * 119.99919 * 98.09009 * 8 6 5 10 10 N 1.34779 * 120.00141 * 278.09058 * 8 6 5 11 11 C 1.46499 * 119.99881 * 185.86807 * 10 8 6 12 12 C 1.53000 * 109.47159 * 264.63667 * 11 10 8 13 13 O 1.42895 * 109.47162 * 65.00506 * 12 11 10 14 14 C 1.46502 * 119.99704 * 5.87237 * 10 8 6 15 15 C 1.52998 * 109.46754 * 264.72874 * 14 10 8 16 16 N 1.46904 * 109.46677 * 180.02562 * 15 14 10 17 17 C 1.46901 * 111.00017 * 180.02562 * 16 15 14 18 18 C 1.50690 * 109.47566 * 179.97438 * 17 16 15 19 19 O 1.21298 * 119.99682 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00419 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00449 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99328 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00352 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99757 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47173 * 90.00029 * 25 23 21 27 27 H 1.48503 * 109.47082 * 209.99519 * 25 23 21 28 28 H 1.48491 * 109.47132 * 329.99557 * 25 23 21 29 29 C 1.53873 * 106.59908 * 336.38833 * 6 5 4 30 30 H 1.08996 * 109.47039 * 297.46311 * 1 2 3 31 31 H 1.09005 * 109.46745 * 57.46169 * 1 2 3 32 32 H 1.08993 * 109.47072 * 177.45808 * 1 2 3 33 33 H 1.09001 * 110.75449 * 321.69740 * 4 2 1 34 34 H 1.08988 * 110.75626 * 84.87881 * 4 2 1 35 35 H 1.08997 * 110.48194 * 279.26345 * 5 4 2 36 36 H 1.09000 * 110.48554 * 156.61976 * 5 4 2 37 37 H 1.08994 * 109.47309 * 24.64088 * 11 10 8 38 38 H 1.09000 * 109.46701 * 144.63586 * 11 10 8 39 39 H 1.09003 * 109.46885 * 185.00158 * 12 11 10 40 40 H 1.08998 * 109.46915 * 304.99915 * 12 11 10 41 41 H 0.96706 * 113.99832 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.46801 * 144.73254 * 14 10 8 43 43 H 1.09000 * 109.46878 * 24.73306 * 14 10 8 44 44 H 1.09004 * 109.47156 * 60.00597 * 15 14 10 45 45 H 1.09001 * 109.47340 * 300.00183 * 15 14 10 46 46 H 1.00898 * 110.99825 * 56.05026 * 16 15 14 47 47 H 1.09001 * 109.46880 * 59.99719 * 17 16 15 48 48 H 1.09003 * 109.46841 * 300.00615 * 17 16 15 49 49 H 0.96999 * 120.00158 * 0.02562 * 20 18 17 50 50 H 0.97003 * 119.99494 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.03267 * 119.28972 * 29 6 5 52 52 H 1.08995 * 110.03179 * 240.71923 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0722 -0.7836 -1.2211 5 6 3.4907 -1.1990 -0.7583 6 6 3.3165 -1.5397 0.7362 7 1 3.1695 -2.6125 0.8607 8 6 4.5280 -1.0916 1.5124 9 8 4.5096 -0.0356 2.1087 10 7 5.6319 -1.8642 1.5439 11 6 6.7613 -1.4933 2.4001 12 6 7.7874 -0.7092 1.5796 13 8 7.2126 0.5282 1.1552 14 6 5.7023 -3.0748 0.7219 15 6 5.2829 -4.2847 1.5591 16 7 5.3542 -5.4987 0.7349 17 6 4.9569 -6.6835 1.5074 18 6 5.0417 -7.9063 0.6309 19 8 5.3985 -7.8013 -0.5237 20 7 4.7221 -9.1167 1.1300 21 6 4.7997 -10.2294 0.3327 22 1 5.1166 -10.1357 -0.6954 23 6 4.4697 -11.4772 0.8472 24 7 4.0836 -11.5909 2.0982 25 14 4.5749 -12.9930 -0.2394 26 1 5.9330 -13.5843 -0.1340 27 1 3.5657 -13.9892 0.2017 28 1 4.3095 -12.6106 -1.6495 29 6 2.0699 -0.7773 1.2183 30 1 -0.3633 0.4739 0.9118 31 1 -0.3633 0.5528 -0.8664 32 1 -0.3633 -1.0266 -0.0456 33 1 1.4581 -1.6619 -1.4201 34 1 2.1221 -0.1419 -2.1007 35 1 4.1898 -0.3720 -0.8821 36 1 3.8316 -2.0740 -1.3118 37 1 6.4051 -0.8745 3.2236 38 1 7.2267 -2.3950 2.7982 39 1 8.6668 -0.5102 2.1922 40 1 8.0775 -1.2937 0.7065 41 1 7.8084 1.0784 0.6283 42 1 6.7237 -3.2145 0.3677 43 1 5.0323 -2.9737 -0.1319 44 1 4.2615 -4.1451 1.9133 45 1 5.9530 -4.3857 2.4128 46 1 6.2761 -5.6154 0.3420 47 1 3.9330 -6.5603 1.8605 48 1 5.6241 -6.8009 2.3613 49 1 4.4371 -9.2007 2.0534 50 1 3.8536 -12.4621 2.4574 51 1 1.3175 -1.4802 1.5761 52 1 2.3412 -0.0832 2.0137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700039379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:37 Heat of formation + Delta-G solvation = -160.588074 kcal Electronic energy + Delta-G solvation = -30435.610376 eV Core-core repulsion = 26240.258585 eV Total energy + Delta-G solvation = -4195.351791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46717 -40.12622 -38.83600 -37.77532 -37.40153 -36.07903 -35.48986 -33.25120 -32.69505 -31.17105 -30.02081 -29.48376 -27.57889 -26.28208 -25.62103 -23.96643 -23.46798 -21.75298 -21.13125 -20.91062 -19.93821 -19.54316 -18.65566 -18.27363 -17.85157 -17.43505 -17.00315 -16.47061 -16.25698 -16.05747 -15.92755 -15.74433 -15.28257 -15.00257 -14.97807 -14.75771 -14.57615 -14.46835 -14.00749 -13.88218 -13.75139 -13.57190 -13.37531 -13.12337 -12.96552 -12.81322 -12.66637 -12.60950 -12.40019 -12.28638 -12.19615 -12.17687 -12.11144 -11.70217 -11.62767 -11.48890 -11.46853 -11.29794 -10.97137 -10.60451 -10.35385 -9.99928 -9.69372 -9.34240 -8.45392 -5.93895 1.39263 1.43427 1.55896 1.67938 1.92630 2.07356 2.30887 2.96148 3.22406 3.37380 3.48568 3.59963 3.64226 3.74551 3.91863 4.05551 4.11002 4.24029 4.27674 4.32782 4.35986 4.44527 4.46117 4.50109 4.50867 4.55310 4.59332 4.62577 4.64584 4.72011 4.73427 4.76842 4.90180 4.94686 4.99615 5.03825 5.10754 5.15729 5.25740 5.34745 5.38444 5.42667 5.56414 5.61680 5.85706 6.08064 6.34446 6.46220 6.61397 6.91709 7.14263 7.25696 7.58330 8.13089 8.72018 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.002223 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.101370 B =12592.279512 C =14101.060729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.114 4.114 7 H 0.103 0.897 8 C 0.523 3.477 9 O -0.565 6.565 10 N -0.603 5.603 11 C 0.106 3.894 12 C 0.060 3.940 13 O -0.586 6.586 14 C 0.112 3.888 15 C 0.048 3.952 16 N -0.675 5.675 17 C 0.066 3.934 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.111 4.111 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.388 0.612 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.349 0.651 47 H 0.102 0.898 48 H 0.067 0.933 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.075 0.925 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 22.535 0.059 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.081 0.919 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.135 4.135 7 H 0.121 0.879 8 C 0.312 3.688 9 O -0.443 6.443 10 N -0.336 5.336 11 C -0.017 4.017 12 C -0.019 4.019 13 O -0.393 6.393 14 C -0.011 4.011 15 C -0.082 4.082 16 N -0.308 5.308 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.149 4.149 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.236 0.764 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.168 0.832 47 H 0.120 0.880 48 H 0.085 0.915 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.769 22.855 -0.202 22.869 hybrid contribution 1.282 -0.882 0.557 1.653 sum 2.051 21.973 0.354 22.072 Atomic orbital electron populations 1.21781 0.93883 1.02239 1.01948 1.21929 0.96283 0.98718 0.94355 0.91870 1.22573 0.94898 1.00263 0.97494 1.22281 0.98451 1.01532 0.92138 1.22032 0.92759 1.02214 0.96501 0.87924 1.20906 0.84537 0.83180 0.80157 1.90645 1.83171 1.23844 1.46621 1.47802 1.16046 1.24706 1.45008 1.21693 0.86947 0.99894 0.93126 1.22657 0.95374 0.85453 0.98407 1.86658 1.45205 1.32453 1.74968 1.21605 1.04104 0.82013 0.93374 1.22361 1.01886 0.89052 0.94916 1.59942 1.34768 1.00893 1.35217 1.21510 1.03121 0.88015 0.93977 1.20846 0.82486 0.85141 0.88851 1.90495 1.53382 1.86524 1.20315 1.41948 1.59624 1.05761 1.13865 1.19663 1.44360 0.85936 0.96162 0.90195 1.26028 0.96148 1.01496 0.97661 1.69675 1.45465 1.26597 1.14528 0.84944 0.78372 0.77114 0.78035 1.19625 1.19731 1.19693 1.22198 0.95167 0.98870 0.98630 0.92754 0.91880 0.92157 0.90375 0.90505 0.92397 0.89772 0.91279 0.86871 0.91039 0.92549 0.76369 0.88895 0.88712 0.90902 0.93877 0.83230 0.87989 0.91493 0.77018 0.91356 0.90625 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.12 71.98 0.66 -1.44 16 2 C -0.09 -1.69 3.46 -9.71 -0.03 -1.72 16 3 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.87 6.33 31.89 0.20 -1.66 16 5 C -0.11 -1.94 5.68 31.67 0.18 -1.76 16 6 C -0.11 -2.34 2.37 -10.81 -0.03 -2.36 16 7 H 0.10 1.99 6.49 -2.39 -0.02 1.97 16 8 C 0.52 12.88 6.49 87.66 0.57 13.45 16 9 O -0.56 -18.22 14.42 -2.35 -0.03 -18.25 16 10 N -0.60 -11.84 2.43 -821.81 -2.00 -13.84 16 11 C 0.11 1.83 5.85 86.38 0.51 2.34 16 12 C 0.06 0.87 7.39 71.98 0.53 1.41 16 13 O -0.59 -11.70 12.85 -148.29 -1.90 -13.60 16 14 C 0.11 1.93 5.31 86.38 0.46 2.38 16 15 C 0.05 0.94 5.91 86.30 0.51 1.45 16 16 N -0.67 -18.22 6.12 -517.93 -3.17 -21.40 16 17 C 0.07 2.08 6.17 85.55 0.53 2.60 16 18 C 0.44 19.85 7.82 87.65 0.69 20.54 16 19 O -0.62 -32.75 15.78 -3.09 -0.05 -32.80 16 20 N -0.57 -28.58 5.29 -307.00 -1.62 -30.20 16 21 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 25 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 C -0.11 -2.30 5.92 31.32 0.19 -2.11 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.19 7.85 -2.39 -0.02 1.18 16 36 H 0.08 1.40 6.94 -2.39 -0.02 1.39 16 37 H 0.07 1.53 7.35 -2.39 -0.02 1.51 16 38 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.70 8.04 -2.39 -0.02 0.68 16 41 H 0.39 4.26 9.12 -74.05 -0.68 3.59 16 42 H 0.09 1.34 8.01 -2.38 -0.02 1.32 16 43 H 0.09 1.70 4.91 -2.39 -0.01 1.69 16 44 H 0.07 1.47 7.31 -2.38 -0.02 1.46 16 45 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16 46 H 0.35 9.62 8.43 -89.70 -0.76 8.86 16 47 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 48 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 51 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 52 H 0.06 1.54 6.59 -2.39 -0.02 1.52 16 Total: -1.00 -73.87 415.43 -1.46 -75.33 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -1.22 Total: 44.09 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.23 Total: 15.25 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -6.51 Total: -114.19 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -1.99 Total: -64.66 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -73.87 -1.46 -75.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700039379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.260 kcal (2) G-P(sol) polarization free energy of solvation -73.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds