Wall clock time and date at job start Wed Apr 1 2020 00:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.67671 * 2 1 4 4 C 1.54892 * 110.75473 * 236.76740 * 2 1 3 5 5 C 1.54267 * 104.19440 * 203.55755 * 4 2 1 6 6 C 1.53879 * 106.60200 * 23.60995 * 5 4 2 7 7 H 1.09003 * 110.02795 * 240.66807 * 6 5 4 8 8 C 1.50699 * 110.03275 * 119.28211 * 6 5 4 9 9 O 1.21276 * 119.99921 * 263.15410 * 8 6 5 10 10 N 1.34772 * 119.99781 * 83.15838 * 8 6 5 11 11 C 1.46504 * 120.00133 * 175.07467 * 10 8 6 12 12 C 1.52992 * 109.47242 * 265.01172 * 11 10 8 13 13 O 1.42903 * 109.47373 * 66.79687 * 12 11 10 14 14 C 1.46500 * 120.00259 * 355.07624 * 10 8 6 15 15 C 1.52998 * 109.47318 * 267.46107 * 14 10 8 16 16 N 1.46898 * 109.47145 * 177.22648 * 15 14 10 17 17 C 1.46905 * 110.99836 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.47106 * 179.97438 * 17 16 15 19 19 O 1.21292 * 119.99459 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99942 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99970 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99987 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00130 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00040 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47107 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47227 * 119.99612 * 25 23 21 28 28 H 1.48499 * 109.46762 * 239.99858 * 25 23 21 29 29 C 1.54269 * 106.59284 * 359.97438 * 6 5 4 30 30 H 1.08997 * 109.47182 * 181.78270 * 1 2 3 31 31 H 1.09001 * 109.46578 * 301.77902 * 1 2 3 32 32 H 1.08990 * 109.47150 * 61.77835 * 1 2 3 33 33 H 1.09001 * 110.49173 * 84.88145 * 4 2 1 34 34 H 1.08997 * 110.59680 * 322.28754 * 4 2 1 35 35 H 1.08994 * 110.03516 * 264.32282 * 5 4 2 36 36 H 1.09003 * 110.07348 * 142.91245 * 5 4 2 37 37 H 1.09001 * 109.46437 * 25.01300 * 11 10 8 38 38 H 1.08995 * 109.47325 * 145.00857 * 11 10 8 39 39 H 1.09002 * 109.47230 * 186.79379 * 12 11 10 40 40 H 1.08994 * 109.47850 * 306.79875 * 12 11 10 41 41 H 0.96696 * 114.00342 * 184.95842 * 13 12 11 42 42 H 1.08999 * 109.47425 * 147.45634 * 14 10 8 43 43 H 1.09007 * 109.47092 * 27.46215 * 14 10 8 44 44 H 1.09001 * 109.46925 * 57.22241 * 15 14 10 45 45 H 1.09003 * 109.46808 * 297.22719 * 15 14 10 46 46 H 1.00897 * 111.00294 * 56.04664 * 16 15 14 47 47 H 1.09003 * 109.46863 * 299.99541 * 17 16 15 48 48 H 1.08996 * 109.47231 * 59.99842 * 17 16 15 49 49 H 0.96998 * 120.00191 * 359.97438 * 20 18 17 50 50 H 0.96998 * 119.99748 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.48298 * 95.07368 * 29 6 5 52 52 H 1.09002 * 110.48340 * 217.71126 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4949 -1.2214 -0.7735 6 6 3.4975 -1.2224 0.7653 7 1 4.2365 -0.5129 1.1378 8 6 3.8044 -2.6051 1.2801 9 8 2.9007 -3.3450 1.6065 10 7 5.0832 -3.0193 1.3778 11 6 5.3879 -4.3204 1.9783 12 6 5.7185 -4.1333 3.4603 13 8 4.5491 -3.7004 4.1583 14 6 6.1686 -2.1684 0.8837 15 6 6.4867 -2.5382 -0.5664 16 7 7.5290 -1.6413 -1.0832 17 6 7.8605 -1.9672 -2.4767 18 6 8.9302 -1.0279 -2.9714 19 8 9.3725 -0.1711 -2.2356 20 7 9.3946 -1.1394 -4.2317 21 6 10.3681 -0.2853 -4.6816 22 1 10.7625 0.4772 -4.0262 23 6 10.8465 -0.3999 -5.9811 24 7 10.3662 -1.3273 -6.7787 25 14 12.1724 0.7643 -6.5943 26 1 12.5405 1.7104 -5.5104 27 1 13.3692 -0.0168 -6.9976 28 1 11.6612 1.5254 -7.7625 29 6 2.0831 -0.7947 1.2086 30 1 -0.3633 -1.0271 0.0320 31 1 -0.3632 0.5412 0.8736 32 1 -0.3633 0.4859 -0.9054 33 1 2.1289 -0.1564 -2.0943 34 1 1.4600 -1.6691 -1.4086 35 1 4.2320 -0.5110 -1.1476 36 1 3.7165 -2.2208 -1.1478 37 1 4.5240 -4.9776 1.8788 38 1 6.2429 -4.7645 1.4685 39 1 6.0616 -5.0797 3.8783 40 1 6.5028 -3.3839 3.5659 41 1 4.7025 -3.4887 5.0892 42 1 7.0557 -2.3167 1.4995 43 1 5.8625 -1.1234 0.9334 44 1 5.5868 -2.4371 -1.1730 45 1 6.8399 -3.5686 -0.6095 46 1 8.3516 -1.6687 -0.4996 47 1 8.2232 -2.9935 -2.5334 48 1 6.9700 -1.8617 -3.0963 49 1 9.0407 -1.8244 -4.8202 50 1 10.7005 -1.4075 -7.6857 51 1 1.4639 -1.6700 1.4045 52 1 2.1364 -0.1584 2.0920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700039380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:42 Heat of formation + Delta-G solvation = -133.421375 kcal Electronic energy + Delta-G solvation = -30587.356453 eV Core-core repulsion = 26393.182698 eV Total energy + Delta-G solvation = -4194.173755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59354 -38.36311 -38.02751 -36.92594 -36.42533 -34.70920 -33.82071 -31.93605 -31.26862 -30.26492 -29.17309 -28.52635 -26.05207 -25.58817 -24.03640 -23.35425 -22.28964 -21.12320 -20.14283 -19.37024 -18.56769 -17.93528 -17.87885 -17.26378 -16.68658 -16.31935 -15.97868 -15.58647 -15.17287 -14.78714 -14.51104 -14.30583 -14.18902 -13.96247 -13.77009 -13.69616 -13.52960 -13.43277 -13.34762 -12.97249 -12.53557 -12.29114 -12.18543 -12.15803 -11.72514 -11.68056 -11.52734 -11.50476 -11.33852 -11.20197 -11.07348 -10.98701 -10.77971 -10.62270 -10.58557 -10.36716 -10.34647 -10.25477 -9.65109 -9.55034 -8.87888 -8.49779 -8.15069 -7.99491 -6.44730 -3.85689 2.62005 2.76157 3.14169 3.25080 3.32100 3.86965 3.96400 4.05689 4.23173 4.38978 4.40257 4.53372 4.70549 4.80897 4.85857 4.93575 5.01389 5.06125 5.09975 5.13967 5.18322 5.22964 5.25392 5.33162 5.36743 5.44666 5.46643 5.47833 5.57767 5.63322 5.67347 5.72783 5.77438 5.81083 5.88691 5.91998 5.99178 6.01670 6.11372 6.14592 6.21508 6.33510 6.40946 7.07629 7.25823 7.36824 7.52601 7.55979 8.03170 8.16484 8.57634 9.14829 9.50943 10.01880 10.73027 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.002317 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.248146 B =12084.047871 C =13786.193861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.113 4.113 7 H 0.095 0.905 8 C 0.530 3.470 9 O -0.529 6.529 10 N -0.610 5.610 11 C 0.111 3.889 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.108 3.892 15 C 0.036 3.964 16 N -0.664 5.664 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.107 4.107 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.374 0.626 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.028 0.972 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.086 0.914 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.359 -4.722 16.768 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.134 4.134 7 H 0.113 0.887 8 C 0.319 3.681 9 O -0.405 6.405 10 N -0.344 5.344 11 C -0.012 4.012 12 C -0.019 4.019 13 O -0.364 6.364 14 C -0.015 4.015 15 C -0.094 4.094 16 N -0.297 5.297 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.220 0.780 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.046 0.954 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.205 -4.197 16.476 22.809 hybrid contribution 1.575 -0.725 -0.174 1.742 sum -13.630 -4.922 16.301 21.812 Atomic orbital electron populations 1.21739 0.94942 1.01885 1.01448 1.22094 0.95484 0.99139 0.94849 0.90546 1.22422 0.95598 0.99830 0.97785 1.22162 0.98332 1.02200 0.92275 1.21985 0.99819 0.94097 0.97528 0.88729 1.20546 0.81804 0.89160 0.76640 1.90649 1.44840 1.56262 1.48725 1.47800 1.06466 1.19326 1.60783 1.21504 1.02835 0.85931 0.90926 1.22606 0.87791 0.98300 0.93251 1.86655 1.33819 1.89257 1.26681 1.21579 0.90122 0.95766 0.94064 1.22500 0.96981 0.94307 0.95644 1.59987 1.14122 1.53011 1.02602 1.21663 0.99087 0.97012 0.90279 1.19774 0.86213 0.87859 0.83547 1.90523 1.61990 1.38016 1.56227 1.41873 1.35545 1.31750 1.10828 1.19750 1.14057 1.12265 0.96769 0.87844 1.25272 0.99026 0.97722 0.95949 1.69621 1.43443 1.33269 1.07939 0.85802 0.79978 0.79807 0.78779 1.19194 1.20768 1.20713 1.22417 0.94097 1.00561 0.97407 0.92557 0.92792 0.92688 0.91305 0.91535 0.89959 0.91652 0.88788 0.89359 0.92922 0.93517 0.78039 0.90570 0.88716 0.90268 0.95384 0.83185 0.93864 0.89562 0.77460 0.91893 0.89515 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.28 37.16 0.34 -0.82 16 2 C -0.10 -0.89 3.48 -88.64 -0.31 -1.19 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.15 6.27 -25.07 -0.16 -1.31 16 5 C -0.11 -1.16 5.05 -25.61 -0.13 -1.29 16 6 C -0.11 -1.20 2.45 -90.65 -0.22 -1.42 16 7 H 0.09 0.92 6.40 -51.93 -0.33 0.59 16 8 C 0.53 6.62 6.40 -10.99 -0.07 6.55 16 9 O -0.53 -8.39 14.99 5.56 0.08 -8.31 16 10 N -0.61 -6.39 2.45 -173.69 -0.43 -6.81 16 11 C 0.11 1.04 5.90 -4.04 -0.02 1.02 16 12 C 0.06 0.48 7.38 37.15 0.27 0.75 16 13 O -0.56 -5.62 13.43 -35.23 -0.47 -6.09 16 14 C 0.11 1.04 5.45 -4.04 -0.02 1.02 16 15 C 0.04 0.40 5.94 -3.83 -0.02 0.38 16 16 N -0.66 -9.64 6.12 -115.05 -0.70 -10.34 16 17 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 18 C 0.44 10.04 7.82 -10.99 -0.09 9.95 16 19 O -0.58 -15.30 15.78 5.55 0.09 -15.21 16 20 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 25 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 C -0.11 -1.11 5.74 -25.09 -0.14 -1.25 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.66 8.05 -51.93 -0.42 0.25 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 37 H 0.09 1.07 7.22 -51.93 -0.38 0.69 16 38 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 41 H 0.37 2.06 9.12 45.56 0.42 2.48 16 42 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 43 H 0.09 0.93 5.80 -51.92 -0.30 0.63 16 44 H 0.08 0.91 5.41 -51.93 -0.28 0.63 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.35 5.14 8.43 -39.29 -0.33 4.81 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 50 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 51 H 0.09 1.07 6.68 -51.93 -0.35 0.72 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 415.12 15.07 6.26 6.26 Total: -1.00 -33.94 415.12 -8.41 -42.36 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -8.04 Total: 14.60 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.84 Total: 5.37 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.46 Total: -54.71 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.30 Total: -29.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.94 -8.41 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700039380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.066 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds