Wall clock time and date at job start Wed Apr 1 2020 00:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.67671 * 2 1 4 4 C 1.54892 * 110.75473 * 236.76740 * 2 1 3 5 5 C 1.54267 * 104.19440 * 203.55755 * 4 2 1 6 6 C 1.53879 * 106.60200 * 23.60995 * 5 4 2 7 7 H 1.09003 * 110.02795 * 240.66807 * 6 5 4 8 8 C 1.50699 * 110.03275 * 119.28211 * 6 5 4 9 9 O 1.21276 * 119.99921 * 263.15410 * 8 6 5 10 10 N 1.34772 * 119.99781 * 83.15838 * 8 6 5 11 11 C 1.46504 * 120.00133 * 175.07467 * 10 8 6 12 12 C 1.52992 * 109.47242 * 265.01172 * 11 10 8 13 13 O 1.42903 * 109.47373 * 66.79687 * 12 11 10 14 14 C 1.46500 * 120.00259 * 355.07624 * 10 8 6 15 15 C 1.52998 * 109.47318 * 267.46107 * 14 10 8 16 16 N 1.46898 * 109.47145 * 177.22648 * 15 14 10 17 17 C 1.46905 * 110.99836 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.47106 * 179.97438 * 17 16 15 19 19 O 1.21292 * 119.99459 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99942 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99970 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99987 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00130 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00040 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47107 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47227 * 119.99612 * 25 23 21 28 28 H 1.48499 * 109.46762 * 239.99858 * 25 23 21 29 29 C 1.54269 * 106.59284 * 359.97438 * 6 5 4 30 30 H 1.08997 * 109.47182 * 181.78270 * 1 2 3 31 31 H 1.09001 * 109.46578 * 301.77902 * 1 2 3 32 32 H 1.08990 * 109.47150 * 61.77835 * 1 2 3 33 33 H 1.09001 * 110.49173 * 84.88145 * 4 2 1 34 34 H 1.08997 * 110.59680 * 322.28754 * 4 2 1 35 35 H 1.08994 * 110.03516 * 264.32282 * 5 4 2 36 36 H 1.09003 * 110.07348 * 142.91245 * 5 4 2 37 37 H 1.09001 * 109.46437 * 25.01300 * 11 10 8 38 38 H 1.08995 * 109.47325 * 145.00857 * 11 10 8 39 39 H 1.09002 * 109.47230 * 186.79379 * 12 11 10 40 40 H 1.08994 * 109.47850 * 306.79875 * 12 11 10 41 41 H 0.96696 * 114.00342 * 184.95842 * 13 12 11 42 42 H 1.08999 * 109.47425 * 147.45634 * 14 10 8 43 43 H 1.09007 * 109.47092 * 27.46215 * 14 10 8 44 44 H 1.09001 * 109.46925 * 57.22241 * 15 14 10 45 45 H 1.09003 * 109.46808 * 297.22719 * 15 14 10 46 46 H 1.00897 * 111.00294 * 56.04664 * 16 15 14 47 47 H 1.09003 * 109.46863 * 299.99541 * 17 16 15 48 48 H 1.08996 * 109.47231 * 59.99842 * 17 16 15 49 49 H 0.96998 * 120.00191 * 359.97438 * 20 18 17 50 50 H 0.96998 * 119.99748 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.48298 * 95.07368 * 29 6 5 52 52 H 1.09002 * 110.48340 * 217.71126 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4949 -1.2214 -0.7735 6 6 3.4975 -1.2224 0.7653 7 1 4.2365 -0.5129 1.1378 8 6 3.8044 -2.6051 1.2801 9 8 2.9007 -3.3450 1.6065 10 7 5.0832 -3.0193 1.3778 11 6 5.3879 -4.3204 1.9783 12 6 5.7185 -4.1333 3.4603 13 8 4.5491 -3.7004 4.1583 14 6 6.1686 -2.1684 0.8837 15 6 6.4867 -2.5382 -0.5664 16 7 7.5290 -1.6413 -1.0832 17 6 7.8605 -1.9672 -2.4767 18 6 8.9302 -1.0279 -2.9714 19 8 9.3725 -0.1711 -2.2356 20 7 9.3946 -1.1394 -4.2317 21 6 10.3681 -0.2853 -4.6816 22 1 10.7625 0.4772 -4.0262 23 6 10.8465 -0.3999 -5.9811 24 7 10.3662 -1.3273 -6.7787 25 14 12.1724 0.7643 -6.5943 26 1 12.5405 1.7104 -5.5104 27 1 13.3692 -0.0168 -6.9976 28 1 11.6612 1.5254 -7.7625 29 6 2.0831 -0.7947 1.2086 30 1 -0.3633 -1.0271 0.0320 31 1 -0.3632 0.5412 0.8736 32 1 -0.3633 0.4859 -0.9054 33 1 2.1289 -0.1564 -2.0943 34 1 1.4600 -1.6691 -1.4086 35 1 4.2320 -0.5110 -1.1476 36 1 3.7165 -2.2208 -1.1478 37 1 4.5240 -4.9776 1.8788 38 1 6.2429 -4.7645 1.4685 39 1 6.0616 -5.0797 3.8783 40 1 6.5028 -3.3839 3.5659 41 1 4.7025 -3.4887 5.0892 42 1 7.0557 -2.3167 1.4995 43 1 5.8625 -1.1234 0.9334 44 1 5.5868 -2.4371 -1.1730 45 1 6.8399 -3.5686 -0.6095 46 1 8.3516 -1.6687 -0.4996 47 1 8.2232 -2.9935 -2.5334 48 1 6.9700 -1.8617 -3.0963 49 1 9.0407 -1.8244 -4.8202 50 1 10.7005 -1.4075 -7.6857 51 1 1.4639 -1.6700 1.4045 52 1 2.1364 -0.1584 2.0920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700039380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:41 Heat of formation + Delta-G solvation = -159.649556 kcal Electronic energy + Delta-G solvation = -30588.493792 eV Core-core repulsion = 26393.182698 eV Total energy + Delta-G solvation = -4195.311094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48926 -40.12290 -38.81805 -37.80001 -37.40857 -36.08039 -35.49239 -33.25034 -32.70353 -31.15183 -30.11271 -29.43142 -27.57867 -26.35600 -25.60960 -24.11508 -23.27368 -21.93060 -21.09844 -20.90493 -19.93001 -19.43293 -18.64261 -18.09836 -17.81318 -17.53562 -17.07507 -16.73208 -16.45615 -16.08608 -15.89679 -15.46752 -15.28471 -15.03335 -14.89396 -14.81116 -14.51204 -14.39860 -14.15917 -13.90527 -13.73955 -13.57890 -13.37884 -13.12723 -13.01510 -12.91651 -12.75980 -12.52208 -12.38675 -12.35669 -12.15373 -12.10170 -12.00797 -11.79507 -11.57590 -11.49526 -11.39173 -11.36560 -11.00153 -10.59065 -10.35267 -9.99730 -9.70808 -9.33774 -8.45449 -5.93846 1.37814 1.43432 1.57224 1.67294 1.91460 2.07404 2.30804 2.97001 3.22394 3.36310 3.47938 3.59887 3.60840 3.72165 3.93994 4.05373 4.12025 4.25342 4.27113 4.30430 4.33347 4.42013 4.47401 4.49969 4.51875 4.55510 4.61061 4.63570 4.66862 4.70320 4.73000 4.79799 4.86451 4.90315 4.97417 5.05181 5.13262 5.18411 5.29158 5.32485 5.35417 5.42929 5.56775 5.60959 5.85619 6.08114 6.33988 6.46158 6.61411 6.90558 7.14447 7.24220 7.58462 8.13157 8.72192 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.002317 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.248146 B =12084.047871 C =13786.193861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.111 4.111 7 H 0.106 0.894 8 C 0.525 3.475 9 O -0.570 6.570 10 N -0.604 5.604 11 C 0.104 3.896 12 C 0.060 3.940 13 O -0.590 6.590 14 C 0.113 3.887 15 C 0.043 3.957 16 N -0.672 5.672 17 C 0.067 3.933 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.105 4.105 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.390 0.610 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.348 0.652 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.063 0.937 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 -4.567 16.957 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.145 4.145 6 C -0.132 4.132 7 H 0.124 0.876 8 C 0.315 3.685 9 O -0.448 6.448 10 N -0.336 5.336 11 C -0.019 4.019 12 C -0.018 4.018 13 O -0.397 6.397 14 C -0.010 4.010 15 C -0.087 4.087 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.228 3.772 19 O -0.506 6.506 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.198 1.198 29 C -0.143 4.143 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.239 0.761 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.167 0.833 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.709 -4.062 16.677 22.605 hybrid contribution 1.404 -0.813 -0.164 1.630 sum -13.306 -4.875 16.513 21.759 Atomic orbital electron populations 1.21727 0.94280 1.01612 1.02249 1.22095 0.96068 0.99190 0.93793 0.89627 1.22435 0.95104 0.99801 0.98374 1.22113 0.98733 1.01635 0.92023 1.22013 1.00239 0.93341 0.97634 0.87593 1.20872 0.82017 0.89490 0.76127 1.90632 1.46087 1.57442 1.50677 1.47826 1.06037 1.19751 1.60005 1.21695 1.02699 0.85034 0.92448 1.22665 0.87383 0.99685 0.92073 1.86613 1.35261 1.89523 1.28312 1.21565 0.90449 0.95541 0.93438 1.22477 0.95694 0.94252 0.96269 1.59943 1.14664 1.54383 1.01537 1.21505 0.97324 0.96148 0.91621 1.20833 0.86254 0.87735 0.82423 1.90494 1.63365 1.39792 1.56992 1.41952 1.35672 1.31806 1.11800 1.19695 1.15835 1.13117 0.97328 0.90199 1.26028 1.00687 0.99041 0.95609 1.69679 1.44231 1.34080 1.08302 0.84889 0.77630 0.77883 0.78069 1.19652 1.19696 1.19773 1.22374 0.93707 0.99917 0.98339 0.93383 0.92062 0.91815 0.90546 0.92265 0.89935 0.92545 0.91266 0.86940 0.90950 0.92209 0.76098 0.88610 0.88743 0.90585 0.94201 0.83263 0.91631 0.88064 0.77040 0.91372 0.91787 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.28 71.98 0.67 -1.53 16 2 C -0.09 -1.61 3.48 -9.51 -0.03 -1.64 16 3 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -2.23 6.27 31.67 0.20 -2.03 16 5 C -0.11 -2.13 5.05 31.32 0.16 -1.97 16 6 C -0.11 -2.28 2.45 -10.81 -0.03 -2.30 16 7 H 0.11 1.92 6.40 -2.39 -0.02 1.90 16 8 C 0.53 12.97 6.40 87.66 0.56 13.53 16 9 O -0.57 -18.50 14.99 -3.02 -0.05 -18.54 16 10 N -0.60 -11.84 2.45 -821.83 -2.01 -13.85 16 11 C 0.10 1.80 5.90 86.38 0.51 2.31 16 12 C 0.06 0.85 7.38 71.98 0.53 1.38 16 13 O -0.59 -11.34 13.43 -148.98 -2.00 -13.34 16 14 C 0.11 1.92 5.45 86.38 0.47 2.39 16 15 C 0.04 0.85 5.94 86.30 0.51 1.37 16 16 N -0.67 -18.11 6.12 -517.91 -3.17 -21.28 16 17 C 0.07 2.09 6.17 85.56 0.53 2.62 16 18 C 0.44 19.87 7.82 87.66 0.69 20.55 16 19 O -0.62 -32.65 15.78 -3.07 -0.05 -32.70 16 20 N -0.57 -28.59 5.29 -306.98 -1.62 -30.21 16 21 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 24 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 25 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 29 C -0.11 -2.15 5.74 31.66 0.18 -1.96 16 30 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.22 6.32 -2.39 -0.02 1.20 16 37 H 0.07 1.58 7.22 -2.39 -0.02 1.56 16 38 H 0.11 1.35 8.11 -2.39 -0.02 1.33 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 41 H 0.39 3.92 9.12 -74.06 -0.68 3.25 16 42 H 0.10 1.30 8.06 -2.39 -0.02 1.28 16 43 H 0.09 1.65 5.80 -2.38 -0.01 1.64 16 44 H 0.08 1.60 5.41 -2.39 -0.01 1.58 16 45 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.35 9.58 8.43 -89.70 -0.76 8.82 16 47 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 49 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 50 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 51 H 0.06 1.62 6.68 -2.39 -0.02 1.60 16 52 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.85 415.12 -1.58 -75.43 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -1.22 Total: 44.13 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.23 Total: 14.93 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -6.52 Total: -114.14 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -2.09 Total: -64.58 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.85 -1.58 -75.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700039380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.223 kcal (2) G-P(sol) polarization free energy of solvation -73.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds