Wall clock time and date at job start Wed Apr 1 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46728 * 2 1 4 4 O 1.42893 * 109.47403 * 120.00311 * 2 1 3 5 5 C 1.42895 * 114.00279 * 150.00027 * 4 2 1 6 6 C 1.52997 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.48050 * 34.99853 * 10 9 7 12 12 C 1.53003 * 109.47378 * 274.99692 * 10 9 7 13 13 C 1.53010 * 109.47076 * 155.00017 * 10 9 7 14 14 C 1.53933 * 113.73180 * 276.72611 * 13 10 9 15 15 N 1.47956 * 86.17748 * 221.91791 * 14 13 10 16 16 C 1.46898 * 111.00087 * 137.58506 * 15 14 13 17 17 C 1.50698 * 109.47401 * 90.63869 * 16 15 14 18 18 O 1.21295 * 119.99575 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00194 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00014 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00089 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99745 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00314 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99874 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46762 * 59.99617 * 24 22 20 26 26 H 1.48497 * 109.47161 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.46691 * 299.99750 * 24 22 20 28 28 C 1.47954 * 90.76797 * 24.69196 * 15 14 13 29 29 H 1.09001 * 109.47331 * 299.99643 * 1 2 3 30 30 H 1.09004 * 109.47368 * 59.99853 * 1 2 3 31 31 H 1.09003 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46687 * 240.00739 * 2 1 3 33 33 H 1.08996 * 109.47491 * 60.00531 * 3 2 1 34 34 H 1.09008 * 109.47032 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47575 * 300.00373 * 3 2 1 36 36 H 1.09001 * 109.47102 * 60.00096 * 5 4 2 37 37 H 1.09004 * 109.47055 * 300.00038 * 5 4 2 38 38 H 1.09001 * 109.46832 * 60.00112 * 6 5 4 39 39 H 1.09000 * 109.47611 * 300.00409 * 6 5 4 40 40 H 0.96994 * 119.99756 * 0.02562 * 9 7 6 41 41 H 1.08997 * 109.46755 * 60.00147 * 12 10 9 42 42 H 1.08992 * 109.47534 * 180.02562 * 12 10 9 43 43 H 1.09005 * 109.46941 * 300.00980 * 12 10 9 44 44 H 1.09001 * 112.93115 * 48.43343 * 13 10 9 45 45 H 1.08999 * 113.75804 * 336.23805 * 14 13 10 46 46 H 1.09003 * 113.75753 * 107.60487 * 14 13 10 47 47 H 1.09004 * 109.47401 * 210.63849 * 16 15 14 48 48 H 1.09008 * 109.47233 * 330.63724 * 16 15 14 49 49 H 0.97007 * 120.00054 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99854 * 179.97438 * 23 22 20 51 51 H 1.08999 * 113.76592 * 220.99493 * 28 15 14 52 52 H 1.08997 * 113.76130 * 89.62267 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6761 -2.0081 2.2944 7 6 5.0043 -2.6950 2.1062 8 8 5.5675 -2.6424 1.0335 9 7 5.5661 -3.3676 3.1302 10 6 6.8574 -4.0348 2.9473 11 1 7.4788 -3.4455 2.2732 12 6 6.6330 -5.4252 2.3495 13 6 7.5584 -4.1688 4.3008 14 6 8.3288 -2.9062 4.7271 15 7 9.3953 -3.8285 5.1755 16 6 10.7218 -3.3221 4.7992 17 6 11.2663 -2.4642 5.9120 18 8 10.6136 -2.2920 6.9198 19 7 12.4784 -1.8883 5.7875 20 6 12.9740 -1.1082 6.8002 21 1 12.3929 -0.9548 7.6975 22 6 14.2235 -0.5141 6.6716 23 7 14.9304 -0.7003 5.5796 24 14 14.8984 0.5495 8.0512 25 1 15.0122 -0.2609 9.2904 26 1 16.2392 1.0619 7.6705 27 1 13.9806 1.6922 8.2894 28 6 8.9314 -4.8602 4.2217 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 4.0200 -0.5873 0.7124 37 1 3.1809 -2.0706 0.1984 38 1 2.9222 -2.7452 2.5709 39 1 3.7613 -1.2617 3.0841 40 1 5.1153 -3.4099 3.9880 41 1 6.1337 -5.3298 1.3853 42 1 7.5937 -5.9218 2.2139 43 1 6.0115 -6.0146 3.0237 44 1 6.9084 -4.5715 5.0777 45 1 8.6218 -2.2681 3.8934 46 1 7.8543 -2.3555 5.5394 47 1 11.3952 -4.1614 4.6248 48 1 10.6392 -2.7276 3.8892 49 1 13.0006 -2.0264 4.9817 50 1 15.8024 -0.2851 5.4897 51 1 8.9384 -5.8708 4.6301 52 1 9.4007 -4.7936 3.2402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700533065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:16 Heat of formation + Delta-G solvation = -125.161252 kcal Electronic energy + Delta-G solvation = -29236.944139 eV Core-core repulsion = 25043.128570 eV Total energy + Delta-G solvation = -4193.815569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59000 -40.66012 -39.62290 -39.22379 -36.42067 -35.89522 -34.33743 -33.32943 -32.81656 -31.52176 -30.38865 -28.13060 -27.59958 -26.93173 -25.76686 -24.87889 -22.72654 -22.28348 -21.49970 -20.99108 -20.46529 -19.89175 -18.42321 -17.81879 -17.63923 -17.34943 -17.00998 -16.58200 -16.53950 -16.26070 -15.94906 -15.80805 -15.67106 -15.36740 -14.92251 -14.75054 -14.43641 -14.25972 -14.03219 -13.77667 -13.68960 -13.52033 -13.37788 -13.32406 -13.08776 -12.98685 -12.78991 -12.69055 -12.66220 -12.44790 -12.38260 -12.14460 -12.12468 -11.83575 -11.79713 -11.64496 -11.62172 -11.50173 -10.92525 -10.57545 -10.38601 -10.13845 -10.02266 -9.61313 -8.47356 -5.96541 1.38770 1.40099 1.51426 1.60488 1.97224 2.04882 2.27868 2.78056 2.82824 3.18558 3.31800 3.46283 3.64650 3.74119 3.93132 4.00856 4.10076 4.14526 4.17554 4.20798 4.23925 4.28922 4.34207 4.43156 4.47042 4.48177 4.51526 4.53137 4.69330 4.75556 4.77009 4.81796 4.82926 4.84785 4.89823 4.92821 4.97501 5.01022 5.20764 5.27200 5.32326 5.32895 5.38976 5.43825 5.55031 5.89576 6.08349 6.23650 6.54280 6.59754 7.11894 7.23541 7.55454 8.11911 8.69843 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.001774 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.374171 B =15779.561433 C =17362.314102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.080 3.920 6 C -0.132 4.132 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.711 5.711 10 C 0.155 3.845 11 H 0.066 0.934 12 C -0.155 4.155 13 C -0.097 4.097 14 C 0.009 3.991 15 N -0.483 5.483 16 C 0.023 3.977 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.576 5.576 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.016 3.984 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.417 0.583 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.074 0.926 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.108 0.892 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.190 -5.900 -13.103 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 C -0.233 4.233 4 O -0.317 6.317 5 C 0.003 3.997 6 C -0.172 4.172 7 C 0.305 3.695 8 O -0.466 6.466 9 N -0.363 5.363 10 C 0.050 3.950 11 H 0.084 0.916 12 C -0.213 4.213 13 C -0.116 4.116 14 C -0.120 4.120 15 N -0.205 5.205 16 C -0.109 4.109 17 C 0.228 3.772 18 O -0.504 6.504 19 N -0.214 5.214 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.113 4.113 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.254 0.746 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.139 0.861 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.126 0.874 48 H 0.092 0.908 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -26.029 -5.840 -12.370 29.404 hybrid contribution 1.134 0.967 -0.448 1.557 sum -24.894 -4.872 -12.818 28.421 Atomic orbital electron populations 1.21866 0.92267 1.02917 1.03271 1.22290 0.95972 0.92578 0.87641 1.22303 1.01093 0.96606 1.03260 1.87825 1.36493 1.70349 1.37024 1.22070 0.85244 0.95512 0.96905 1.21449 0.94150 1.01950 0.99638 1.20790 0.87233 0.77892 0.83565 1.90707 1.65406 1.62786 1.27707 1.45963 1.22077 1.53159 1.15115 1.20926 0.84184 0.94342 0.95582 0.91590 1.22079 1.03265 0.95286 1.00644 1.23133 0.96105 0.95445 0.96941 1.24002 0.93343 0.95837 0.98785 1.68338 0.99707 1.07933 1.44556 1.22352 0.94532 0.99146 0.94825 1.20824 0.82314 0.84126 0.89901 1.90475 1.60308 1.66007 1.33633 1.41960 1.16372 1.44333 1.18730 1.19633 1.01735 1.26427 0.98748 0.90423 1.26049 0.95904 0.99070 1.00249 1.69669 1.13507 1.45226 1.27767 0.84984 0.77517 0.78093 0.77702 1.19652 1.19372 1.19754 1.24082 0.93253 0.98020 0.95936 0.92030 0.89546 0.92006 0.91900 0.92019 0.93418 0.90033 0.93944 0.93072 0.85736 0.86671 0.74623 0.93577 0.90383 0.90646 0.86063 0.91955 0.90978 0.87379 0.90799 0.77102 0.91298 0.87350 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.56 71.98 0.69 -0.82 16 2 C 0.07 1.01 3.34 30.59 0.10 1.11 16 3 C -0.18 -2.28 9.53 71.98 0.69 -1.59 16 4 O -0.40 -6.98 9.99 -148.98 -1.49 -8.47 16 5 C 0.08 1.40 5.04 71.98 0.36 1.76 16 6 C -0.13 -1.81 6.07 29.85 0.18 -1.63 16 7 C 0.52 9.82 7.79 87.66 0.68 10.51 16 8 O -0.59 -16.18 15.64 -3.02 -0.05 -16.23 16 9 N -0.71 -10.63 5.08 -442.52 -2.25 -12.87 16 10 C 0.15 2.66 2.41 45.00 0.11 2.77 16 11 H 0.07 1.49 7.37 -2.39 -0.02 1.48 16 12 C -0.15 -2.22 9.29 71.98 0.67 -1.55 16 13 C -0.10 -1.78 3.49 -10.14 -0.04 -1.81 16 14 C 0.01 0.26 7.51 86.41 0.65 0.91 16 15 N -0.48 -15.26 5.65 -912.53 -5.15 -20.42 16 16 C 0.02 0.82 5.28 85.56 0.45 1.27 16 17 C 0.44 21.80 7.83 87.66 0.69 22.48 16 18 O -0.62 -35.60 16.01 -3.08 -0.05 -35.65 16 19 N -0.58 -30.51 5.29 -306.99 -1.62 -32.13 16 20 C -0.34 -19.57 9.68 84.04 0.81 -18.75 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.54 13.05 21.66 0.28 -50.25 16 24 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.02 0.32 6.57 86.41 0.57 0.89 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.83 7.79 -2.39 -0.02 0.81 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.71 7.87 -2.38 -0.02 0.69 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.04 0.86 7.83 -2.39 -0.02 0.84 16 37 H 0.05 0.93 8.04 -2.38 -0.02 0.91 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.42 3.90 8.60 -92.71 -0.80 3.10 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.99 7.43 -2.39 -0.02 0.97 16 43 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 1.78 7.29 -2.39 -0.02 1.76 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.11 3.36 8.08 -2.38 -0.02 3.34 16 48 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 49 H 0.40 19.85 7.90 -92.70 -0.73 19.12 16 50 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 51 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.08 1.52 7.85 -2.39 -0.02 1.50 16 Total: -1.00 -77.20 427.06 -1.84 -79.04 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.62 Total: 36.00 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.08 Total: 15.31 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -8.74 Total: -115.67 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -1.58 Total: -60.34 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.20 -1.84 -79.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700533065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.124 kcal (2) G-P(sol) polarization free energy of solvation -77.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds