Wall clock time and date at job start Wed Apr 1 2020 01:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 O 1.42896 * 109.47133 * 119.99856 * 2 1 3 5 5 C 1.42900 * 114.00061 * 90.00054 * 4 2 1 6 6 C 1.52998 * 109.47513 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47460 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46716 * 324.99263 * 10 9 7 12 12 C 1.52996 * 109.47499 * 84.99568 * 10 9 7 13 13 C 1.53001 * 109.47094 * 204.99856 * 10 9 7 14 14 C 1.53932 * 113.73468 * 161.73052 * 13 10 9 15 15 N 1.47964 * 86.18072 * 221.92055 * 14 13 10 16 16 C 1.46896 * 111.00403 * 137.57956 * 15 14 13 17 17 C 1.50703 * 109.46760 * 90.63812 * 16 15 14 18 18 O 1.21291 * 120.00423 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99914 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00285 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99718 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00146 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99850 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99864 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46886 * 60.00451 * 24 22 20 26 26 H 1.48504 * 109.46811 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47392 * 300.00353 * 24 22 20 28 28 C 1.47961 * 90.76259 * 24.68496 * 15 14 13 29 29 H 1.08995 * 109.47146 * 59.99766 * 1 2 3 30 30 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46784 * 299.99850 * 1 2 3 32 32 H 1.08997 * 109.46870 * 239.99700 * 2 1 3 33 33 H 1.09005 * 109.46813 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47370 * 300.00097 * 3 2 1 35 35 H 1.09002 * 109.47237 * 60.00427 * 3 2 1 36 36 H 1.09000 * 109.47494 * 59.99850 * 5 4 2 37 37 H 1.09009 * 109.47294 * 299.99944 * 5 4 2 38 38 H 1.09001 * 109.47473 * 59.99964 * 6 5 4 39 39 H 1.09005 * 109.46819 * 299.99702 * 6 5 4 40 40 H 0.97001 * 120.00484 * 359.97438 * 9 7 6 41 41 H 1.08995 * 109.47184 * 180.02562 * 12 10 9 42 42 H 1.09002 * 109.47227 * 300.05407 * 12 10 9 43 43 H 1.09004 * 109.46864 * 60.04546 * 12 10 9 44 44 H 1.09005 * 112.93660 * 293.43649 * 13 10 9 45 45 H 1.09001 * 113.75723 * 336.23459 * 14 13 10 46 46 H 1.08994 * 113.76342 * 107.60578 * 14 13 10 47 47 H 1.08994 * 109.47232 * 210.63588 * 16 15 14 48 48 H 1.09001 * 109.46816 * 330.64308 * 16 15 14 49 49 H 0.97006 * 119.99926 * 359.97438 * 19 17 16 50 50 H 0.97007 * 119.99699 * 179.97438 * 23 22 20 51 51 H 1.08998 * 113.76224 * 220.99495 * 28 15 14 52 52 H 1.08998 * 113.85675 * 89.64701 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0781 0.9886 6 6 2.7079 -2.6927 2.2945 7 6 2.9129 -4.1738 2.1065 8 8 2.6756 -4.6874 1.0337 9 7 3.3588 -4.9278 3.1307 10 6 3.5574 -6.3677 2.9480 11 1 2.7951 -6.7569 2.2732 12 6 4.9435 -6.6198 2.3513 13 6 3.4488 -7.0733 4.3013 14 6 3.1966 -8.5878 4.1920 15 7 2.2337 -8.4074 5.3008 16 6 1.0053 -9.1766 5.0618 17 6 1.1463 -10.5493 5.6675 18 8 2.1693 -10.8564 6.2423 19 7 0.1356 -11.4357 5.5707 20 6 0.2636 -12.6843 6.1222 21 1 1.1745 -12.9577 6.6339 22 6 -0.7785 -13.5979 6.0227 23 7 -1.8867 -13.2653 5.3996 24 14 -0.6038 -15.2994 6.7736 25 1 -0.3748 -15.1742 8.2355 26 1 -1.8459 -16.0768 6.5325 27 1 0.5479 -15.9996 6.1504 28 6 2.0488 -6.9857 4.9351 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2467 0.1987 37 1 1.2538 -2.5434 0.7125 38 1 1.9758 -2.5242 3.0843 39 1 3.6542 -2.2276 2.5711 40 1 3.5482 -4.5171 3.9888 41 1 5.0911 -7.6910 2.2150 42 1 5.0212 -6.1164 1.3876 43 1 5.7059 -6.2312 3.0266 44 1 4.2567 -6.8095 4.9840 45 1 2.7331 -8.8891 3.2525 46 1 4.0610 -9.1972 4.4558 47 1 0.1600 -8.6626 5.5193 48 1 0.8372 -9.2685 3.9887 49 1 -0.6827 -11.1899 5.1113 50 1 -2.6141 -13.9033 5.3299 51 1 1.9961 -6.3149 5.7927 52 1 1.2497 -6.8165 4.2134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700533066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:20 Heat of formation + Delta-G solvation = -125.139999 kcal Electronic energy + Delta-G solvation = -29199.046903 eV Core-core repulsion = 25005.232256 eV Total energy + Delta-G solvation = -4193.814647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59427 -40.63820 -39.61432 -39.20387 -36.41592 -35.89083 -34.32053 -33.32510 -32.80170 -31.49981 -30.44524 -28.11629 -27.45113 -27.06211 -25.80800 -24.84332 -22.66675 -22.26898 -21.44803 -20.99288 -20.55058 -19.89340 -18.41555 -17.87115 -17.48439 -17.33407 -16.96244 -16.73996 -16.54387 -16.21794 -15.92774 -15.80431 -15.62718 -15.37417 -14.91126 -14.75392 -14.43207 -14.20531 -14.04934 -13.77073 -13.69210 -13.50580 -13.39300 -13.34942 -13.07857 -12.99420 -12.89132 -12.72473 -12.46025 -12.43146 -12.37020 -12.14461 -12.10728 -11.90607 -11.84439 -11.60794 -11.60358 -11.49603 -10.91291 -10.55764 -10.38507 -10.12708 -10.01991 -9.62561 -8.47029 -5.96204 1.39240 1.40628 1.51943 1.63052 1.96380 2.05019 2.28183 2.77184 2.83230 3.18952 3.35160 3.44078 3.65934 3.76777 3.94980 4.02982 4.08910 4.15866 4.17493 4.20001 4.23263 4.30315 4.34678 4.39700 4.48096 4.50111 4.51426 4.53030 4.71009 4.76188 4.77475 4.81290 4.83377 4.84484 4.91547 4.93941 4.99375 4.99951 5.19829 5.28685 5.32945 5.33649 5.39109 5.43072 5.52657 5.89427 6.08019 6.25097 6.57442 6.59973 7.12203 7.26596 7.55617 8.12012 8.70196 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.001605 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.070765 B =17442.423116 C =18361.023315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.147 4.147 4 O -0.396 6.396 5 C 0.079 3.921 6 C -0.130 4.130 7 C 0.518 3.482 8 O -0.587 6.587 9 N -0.707 5.707 10 C 0.158 3.842 11 H 0.067 0.933 12 C -0.157 4.157 13 C -0.098 4.098 14 C 0.013 3.987 15 N -0.482 5.482 16 C 0.024 3.976 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.576 5.576 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.012 3.988 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.418 0.582 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.074 0.926 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.106 0.894 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 29.196 -10.131 31.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.316 6.316 5 C 0.002 3.998 6 C -0.170 4.170 7 C 0.306 3.694 8 O -0.467 6.467 9 N -0.359 5.359 10 C 0.052 3.948 11 H 0.085 0.915 12 C -0.216 4.216 13 C -0.117 4.117 14 C -0.116 4.116 15 N -0.204 5.204 16 C -0.108 4.108 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.116 4.116 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.123 0.877 48 H 0.092 0.908 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.125 0.875 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.375 28.421 -9.684 31.172 hybrid contribution -0.953 -1.053 -0.633 1.555 sum 7.422 27.369 -10.317 30.176 Atomic orbital electron populations 1.22297 0.95513 1.02125 1.03259 1.22281 0.94163 0.94395 0.87625 1.21867 1.01706 0.93520 1.03277 1.87824 1.86886 1.19975 1.36921 1.22080 0.99686 0.81094 0.96975 1.21438 1.06098 0.89833 0.99630 1.20815 0.75454 0.89659 0.83492 1.90721 1.52859 1.75373 1.27773 1.45869 1.66867 1.08023 1.15172 1.20836 0.98061 0.80316 0.95558 0.91496 1.22091 0.96193 1.02424 1.00862 1.23132 0.98714 0.93717 0.96121 1.23954 0.97537 0.96904 0.93206 1.68347 1.07917 1.03631 1.40540 1.22342 0.95983 0.92449 1.00037 1.20799 0.84096 0.87680 0.84532 1.90476 1.31182 1.80202 1.48469 1.41963 1.16215 1.12462 1.50764 1.19636 1.02396 0.90406 1.34077 0.90389 1.26047 0.94325 1.03488 0.97382 1.69673 1.05680 1.38032 1.42831 0.84981 0.77891 0.76830 0.78581 1.19676 1.19406 1.19698 1.24057 0.96765 0.90371 1.00401 0.90158 0.93297 0.91903 0.92067 0.92105 0.89639 0.91926 0.93391 0.93773 0.86168 0.85885 0.74434 0.91460 0.93391 0.90655 0.86053 0.91250 0.90510 0.87668 0.90764 0.77129 0.91309 0.87529 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.53 71.98 0.69 -1.32 16 2 C 0.07 0.93 3.34 30.60 0.10 1.03 16 3 C -0.15 -1.37 9.56 71.98 0.69 -0.68 16 4 O -0.40 -6.34 9.99 -148.98 -1.49 -7.83 16 5 C 0.08 1.25 5.04 71.98 0.36 1.61 16 6 C -0.13 -1.50 6.07 29.85 0.18 -1.32 16 7 C 0.52 8.86 7.79 87.66 0.68 9.54 16 8 O -0.59 -15.51 15.64 -3.03 -0.05 -15.56 16 9 N -0.71 -9.20 4.94 -442.54 -2.19 -11.39 16 10 C 0.16 2.71 2.29 44.99 0.10 2.81 16 11 H 0.07 1.51 7.48 -2.39 -0.02 1.49 16 12 C -0.16 -2.61 9.44 71.98 0.68 -1.93 16 13 C -0.10 -1.79 3.35 -10.15 -0.03 -1.82 16 14 C 0.01 0.37 7.41 86.40 0.64 1.01 16 15 N -0.48 -15.22 5.65 -912.40 -5.15 -20.38 16 16 C 0.02 0.84 5.28 85.56 0.45 1.29 16 17 C 0.44 21.78 7.83 87.66 0.69 22.46 16 18 O -0.62 -35.43 16.01 -3.06 -0.05 -35.48 16 19 N -0.58 -30.47 5.29 -306.98 -1.62 -32.09 16 20 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.54 13.05 21.66 0.28 -50.25 16 24 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.01 0.26 7.38 86.40 0.64 0.89 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.65 7.87 -2.39 -0.02 0.63 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.76 7.79 -2.39 -0.02 0.74 16 33 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.83 8.04 -2.39 -0.02 0.81 16 37 H 0.04 0.81 7.83 -2.38 -0.02 0.79 16 38 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.12 0.92 8.14 -2.38 -0.02 0.91 16 40 H 0.42 2.84 8.60 -92.71 -0.80 2.04 16 41 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.07 1.87 7.36 -2.39 -0.02 1.86 16 46 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 48 H 0.07 2.37 7.38 -2.39 -0.02 2.36 16 49 H 0.40 19.84 7.90 -92.70 -0.73 19.11 16 50 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 51 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.07 1.48 7.88 -2.39 -0.02 1.46 16 Total: -1.00 -76.70 428.41 -1.71 -78.41 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.62 Total: 34.33 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 7.15 Total: 14.66 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -8.68 Total: -114.11 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -1.58 Total: -58.87 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -76.70 -1.71 -78.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700533066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.733 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds