Wall clock time and date at job start Wed Apr 1 2020 00:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46647 * 2 1 4 4 O 1.42898 * 109.46802 * 119.99550 * 2 1 3 5 5 C 1.42902 * 113.99859 * 90.00535 * 4 2 1 6 6 C 1.50704 * 109.47331 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99517 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00081 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99994 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.36594 * 32.81358 * 9 8 6 11 11 C 1.54375 * 110.32194 * 270.63528 * 9 8 6 12 12 N 1.48558 * 104.59633 * 217.25049 * 11 9 8 13 13 C 1.46895 * 111.00243 * 159.04364 * 12 11 9 14 14 C 1.50692 * 109.47502 * 54.58007 * 13 12 11 15 15 O 1.21295 * 119.99955 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00313 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00244 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00142 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99956 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46965 * 60.00476 * 21 19 17 23 23 H 1.48499 * 109.46793 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47398 * 300.00311 * 21 19 17 25 25 C 1.48557 * 104.22152 * 39.48309 * 12 11 9 26 26 C 1.54261 * 110.32382 * 154.99611 * 9 8 6 27 27 C 1.52993 * 110.32666 * 0.02562 * 26 9 8 28 28 C 1.52994 * 110.32554 * 237.78943 * 26 9 8 29 29 H 1.08997 * 109.47670 * 299.99795 * 1 2 3 30 30 H 1.09000 * 109.46703 * 60.00649 * 1 2 3 31 31 H 1.09001 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47353 * 239.99779 * 2 1 3 33 33 H 1.08999 * 109.46899 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47700 * 299.99360 * 3 2 1 35 35 H 1.08999 * 109.47424 * 59.99823 * 3 2 1 36 36 H 1.09003 * 109.47349 * 59.99731 * 5 4 2 37 37 H 1.09001 * 109.46991 * 299.99674 * 5 4 2 38 38 H 0.97004 * 120.00524 * 359.97438 * 8 6 5 39 39 H 1.09006 * 110.41277 * 98.47259 * 11 9 8 40 40 H 1.09000 * 110.41495 * 336.03038 * 11 9 8 41 41 H 1.09000 * 109.47468 * 174.58250 * 13 12 11 42 42 H 1.09005 * 109.47080 * 294.57958 * 13 12 11 43 43 H 0.97000 * 120.00379 * 0.02562 * 16 14 13 44 44 H 0.96997 * 119.99674 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.41191 * 201.73984 * 25 12 11 46 46 H 1.09000 * 110.41358 * 79.29561 * 25 12 11 47 47 H 1.08996 * 109.47726 * 177.08772 * 27 26 9 48 48 H 1.09004 * 109.46843 * 297.09144 * 27 26 9 49 49 H 1.09006 * 109.47100 * 57.08684 * 27 26 9 50 50 H 1.09003 * 109.47089 * 302.91403 * 28 26 9 51 51 H 1.09002 * 109.46964 * 62.91304 * 28 26 9 52 52 H 1.08996 * 109.47385 * 182.90906 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2001 -2.0781 0.9887 6 6 2.7014 -2.6832 2.2747 7 8 2.8760 -1.9806 3.2478 8 7 2.9567 -4.0047 2.3431 9 6 3.4435 -4.5929 3.5935 10 1 3.0243 -4.0645 4.4497 11 6 4.9859 -4.5518 3.6405 12 7 5.3745 -5.8250 4.3000 13 6 6.7665 -6.1758 3.9884 14 6 7.6684 -5.0250 4.3530 15 8 7.1978 -4.0118 4.8255 16 7 8.9977 -5.1210 4.1532 17 6 9.8182 -4.0737 4.4844 18 1 9.3993 -3.1719 4.9059 19 6 11.1888 -4.1729 4.2789 20 7 11.6987 -5.2704 3.7665 21 14 12.3068 -2.7462 4.7309 22 1 12.1816 -2.4600 6.1826 23 1 13.7139 -3.1008 4.4153 24 1 11.9135 -1.5436 3.9536 25 6 4.4340 -6.8286 3.7386 26 6 3.0803 -6.0908 3.6580 27 6 2.3222 -6.5086 2.3964 28 6 2.2418 -6.3811 4.9043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 2.9320 -2.2467 0.1988 37 1 1.2538 -2.5433 0.7126 38 1 2.8174 -4.5666 1.5648 39 1 5.3257 -3.6996 4.2293 40 1 5.3960 -4.5056 2.6317 41 1 7.0552 -7.0585 4.5590 42 1 6.8584 -6.3860 2.9228 43 1 9.3741 -5.9307 3.7743 44 1 12.6554 -5.3395 3.6226 45 1 4.3582 -7.6908 4.4011 46 1 4.7576 -7.1388 2.7450 47 1 2.1181 -7.5787 2.4328 48 1 1.3815 -5.9609 2.3397 49 1 2.9271 -6.2838 1.5179 50 1 2.7900 -6.0665 5.7924 51 1 1.3011 -5.8336 4.8450 52 1 2.0369 -7.4500 4.9635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700568550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:26 Heat of formation + Delta-G solvation = -107.449645 kcal Electronic energy + Delta-G solvation = -30839.337528 eV Core-core repulsion = 26646.289993 eV Total energy + Delta-G solvation = -4193.047536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53002 -39.22562 -38.19996 -37.64701 -34.73571 -33.84592 -33.20839 -33.01291 -31.25104 -29.59670 -28.13356 -27.52236 -27.46362 -26.65975 -25.02644 -23.61110 -21.63421 -21.50069 -20.45057 -19.53327 -18.90854 -17.80374 -17.39027 -17.25819 -16.19952 -16.01900 -15.87941 -15.25493 -15.07146 -14.85740 -14.54755 -14.18716 -14.12208 -13.89395 -13.83640 -13.72549 -13.28492 -13.07169 -12.84787 -12.80450 -12.69170 -12.47843 -12.31056 -12.24714 -11.85252 -11.79454 -11.70497 -11.57600 -11.50817 -11.21132 -11.03231 -11.02301 -10.96818 -10.70993 -10.53803 -10.39211 -10.18921 -9.93253 -9.75078 -9.46512 -9.02371 -8.40374 -8.00865 -7.89274 -6.39909 -3.80436 2.60513 2.68537 3.22489 3.27619 3.32886 3.73285 3.91648 4.10622 4.32066 4.35266 4.52915 4.59853 4.66935 4.73765 4.80526 4.82891 4.86850 4.97054 5.05739 5.19121 5.26327 5.27578 5.28236 5.39204 5.40270 5.47643 5.52416 5.54721 5.55387 5.61073 5.71293 5.74150 5.86060 5.90338 5.93216 5.94500 5.96862 6.01912 6.19839 6.24794 6.28009 6.45728 6.71937 6.86556 7.18552 7.27330 7.44918 7.57615 8.08102 8.23391 8.63729 9.20236 9.55605 10.07831 10.77789 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.002862 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.609388 B = 9781.714883 C =12389.026982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 C -0.151 4.151 4 O -0.355 6.355 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.509 6.509 8 N -0.725 5.725 9 C 0.147 3.853 10 H 0.102 0.898 11 C 0.029 3.971 12 N -0.484 5.484 13 C 0.036 3.964 14 C 0.441 3.559 15 O -0.576 6.576 16 N -0.562 5.562 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.037 3.963 26 C -0.075 4.075 27 C -0.143 4.143 28 C -0.133 4.133 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.398 0.602 39 H 0.121 0.879 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.478 -1.863 -11.116 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.274 6.274 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.382 6.382 8 N -0.382 5.382 9 C 0.042 3.958 10 H 0.120 0.880 11 C -0.100 4.100 12 N -0.208 5.208 13 C -0.096 4.096 14 C 0.226 3.774 15 O -0.460 6.460 16 N -0.199 5.199 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.092 4.092 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.190 4.190 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.139 0.861 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.072 0.928 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.438 -0.552 -9.363 24.320 hybrid contribution 0.978 -0.507 -1.714 2.037 sum -21.461 -1.059 -11.077 24.174 Atomic orbital electron populations 1.22315 0.95910 1.02285 1.02793 1.22176 0.93686 0.94188 0.87891 1.21856 1.02210 0.94141 1.02570 1.88098 1.86553 1.17632 1.35074 1.22228 1.00904 0.84310 0.96088 1.20247 0.78192 0.82383 0.89769 1.90777 1.49894 1.60160 1.37368 1.46210 1.68560 1.08136 1.15251 1.21927 0.94829 0.92339 0.86665 0.88034 1.23729 0.92276 0.95728 0.98228 1.65216 1.01081 1.01941 1.52591 1.22088 0.89226 0.98963 0.99338 1.19720 0.83188 0.89135 0.85358 1.90485 1.74447 1.32064 1.49046 1.41836 1.04789 1.17445 1.55835 1.19664 0.87828 0.96333 1.38934 0.87935 1.25255 0.97430 0.98054 0.97175 1.69605 1.13700 1.26643 1.44492 0.85922 0.78374 0.80741 0.79230 1.19835 1.20995 1.19904 1.23330 0.91420 0.96045 0.98377 1.21540 0.95509 0.94128 0.96482 1.21866 0.99931 1.01882 0.96402 1.21807 0.98970 1.01214 0.97015 0.91528 0.91558 0.92596 0.92086 0.91687 0.91195 0.91537 0.90380 0.90628 0.76475 0.86079 0.94419 0.89034 0.93430 0.77506 0.91854 0.89863 0.93892 0.91785 0.91957 0.92648 0.91237 0.92806 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.53 37.16 0.35 -0.90 16 2 C 0.08 0.69 3.34 -26.73 -0.09 0.60 16 3 C -0.15 -1.25 9.56 37.16 0.36 -0.90 16 4 O -0.36 -4.50 9.52 -55.14 -0.52 -5.03 16 5 C 0.04 0.46 6.23 36.01 0.22 0.68 16 6 C 0.51 7.11 7.91 -10.99 -0.09 7.02 16 7 O -0.51 -9.86 16.15 -14.36 -0.23 -10.09 16 8 N -0.72 -8.37 4.57 -52.47 -0.24 -8.61 16 9 C 0.15 2.05 3.04 -66.55 -0.20 1.84 16 10 H 0.10 1.64 7.13 -51.93 -0.37 1.27 16 11 C 0.03 0.52 5.03 -2.19 -0.01 0.50 16 12 N -0.48 -8.19 5.33 -231.42 -1.23 -9.42 16 13 C 0.04 0.65 5.55 -4.98 -0.03 0.62 16 14 C 0.44 10.60 7.50 -10.99 -0.08 10.52 16 15 O -0.58 -15.86 13.24 5.54 0.07 -15.79 16 16 N -0.56 -14.48 5.29 -10.97 -0.06 -14.54 16 17 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 21 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.04 0.45 5.58 -2.18 -0.01 0.44 16 26 C -0.08 -0.81 1.03 -153.13 -0.16 -0.96 16 27 C -0.14 -1.08 7.12 37.15 0.26 -0.81 16 28 C -0.13 -1.33 8.24 37.15 0.31 -1.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.36 7.87 -51.93 -0.41 -0.04 16 32 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 38 H 0.40 3.26 5.86 -40.82 -0.24 3.02 16 39 H 0.12 2.76 6.05 -51.93 -0.31 2.45 16 40 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.05 0.78 7.88 -51.93 -0.41 0.38 16 43 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 46 H 0.04 0.49 7.54 -51.93 -0.39 0.10 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.43 7.91 -51.93 -0.41 0.01 16 49 H 0.05 0.38 6.79 -51.93 -0.35 0.03 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 52 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 414.16 15.07 6.24 6.24 Total: -1.00 -35.30 414.16 -8.69 -43.99 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -9.01 Total: 11.34 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 0.59 Total: 9.54 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.81 Total: -56.67 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.68 Total: -30.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.30 -8.69 -43.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700568550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.459 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds