Wall clock time and date at job start Wed Apr 1 2020 00:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46647 * 2 1 4 4 O 1.42898 * 109.46802 * 119.99550 * 2 1 3 5 5 C 1.42902 * 113.99859 * 90.00535 * 4 2 1 6 6 C 1.50704 * 109.47331 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99517 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00081 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99994 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.36594 * 32.81358 * 9 8 6 11 11 C 1.54375 * 110.32194 * 270.63528 * 9 8 6 12 12 N 1.48558 * 104.59633 * 217.25049 * 11 9 8 13 13 C 1.46895 * 111.00243 * 159.04364 * 12 11 9 14 14 C 1.50692 * 109.47502 * 54.58007 * 13 12 11 15 15 O 1.21295 * 119.99955 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00313 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00244 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00142 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99956 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99799 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46965 * 60.00476 * 21 19 17 23 23 H 1.48499 * 109.46793 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47398 * 300.00311 * 21 19 17 25 25 C 1.48557 * 104.22152 * 39.48309 * 12 11 9 26 26 C 1.54261 * 110.32382 * 154.99611 * 9 8 6 27 27 C 1.52993 * 110.32666 * 0.02562 * 26 9 8 28 28 C 1.52994 * 110.32554 * 237.78943 * 26 9 8 29 29 H 1.08997 * 109.47670 * 299.99795 * 1 2 3 30 30 H 1.09000 * 109.46703 * 60.00649 * 1 2 3 31 31 H 1.09001 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47353 * 239.99779 * 2 1 3 33 33 H 1.08999 * 109.46899 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47700 * 299.99360 * 3 2 1 35 35 H 1.08999 * 109.47424 * 59.99823 * 3 2 1 36 36 H 1.09003 * 109.47349 * 59.99731 * 5 4 2 37 37 H 1.09001 * 109.46991 * 299.99674 * 5 4 2 38 38 H 0.97004 * 120.00524 * 359.97438 * 8 6 5 39 39 H 1.09006 * 110.41277 * 98.47259 * 11 9 8 40 40 H 1.09000 * 110.41495 * 336.03038 * 11 9 8 41 41 H 1.09000 * 109.47468 * 174.58250 * 13 12 11 42 42 H 1.09005 * 109.47080 * 294.57958 * 13 12 11 43 43 H 0.97000 * 120.00379 * 0.02562 * 16 14 13 44 44 H 0.96997 * 119.99674 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.41191 * 201.73984 * 25 12 11 46 46 H 1.09000 * 110.41358 * 79.29561 * 25 12 11 47 47 H 1.08996 * 109.47726 * 177.08772 * 27 26 9 48 48 H 1.09004 * 109.46843 * 297.09144 * 27 26 9 49 49 H 1.09006 * 109.47100 * 57.08684 * 27 26 9 50 50 H 1.09003 * 109.47089 * 302.91403 * 28 26 9 51 51 H 1.09002 * 109.46964 * 62.91304 * 28 26 9 52 52 H 1.08996 * 109.47385 * 182.90906 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2001 -2.0781 0.9887 6 6 2.7014 -2.6832 2.2747 7 8 2.8760 -1.9806 3.2478 8 7 2.9567 -4.0047 2.3431 9 6 3.4435 -4.5929 3.5935 10 1 3.0243 -4.0645 4.4497 11 6 4.9859 -4.5518 3.6405 12 7 5.3745 -5.8250 4.3000 13 6 6.7665 -6.1758 3.9884 14 6 7.6684 -5.0250 4.3530 15 8 7.1978 -4.0118 4.8255 16 7 8.9977 -5.1210 4.1532 17 6 9.8182 -4.0737 4.4844 18 1 9.3993 -3.1719 4.9059 19 6 11.1888 -4.1729 4.2789 20 7 11.6987 -5.2704 3.7665 21 14 12.3068 -2.7462 4.7309 22 1 12.1816 -2.4600 6.1826 23 1 13.7139 -3.1008 4.4153 24 1 11.9135 -1.5436 3.9536 25 6 4.4340 -6.8286 3.7386 26 6 3.0803 -6.0908 3.6580 27 6 2.3222 -6.5086 2.3964 28 6 2.2418 -6.3811 4.9043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 2.9320 -2.2467 0.1988 37 1 1.2538 -2.5433 0.7126 38 1 2.8174 -4.5666 1.5648 39 1 5.3257 -3.6996 4.2293 40 1 5.3960 -4.5056 2.6317 41 1 7.0552 -7.0585 4.5590 42 1 6.8584 -6.3860 2.9228 43 1 9.3741 -5.9307 3.7743 44 1 12.6554 -5.3395 3.6226 45 1 4.3582 -7.6908 4.4011 46 1 4.7576 -7.1388 2.7450 47 1 2.1181 -7.5787 2.4328 48 1 1.3815 -5.9609 2.3397 49 1 2.9271 -6.2838 1.5179 50 1 2.7900 -6.0665 5.7924 51 1 1.3011 -5.8336 4.8450 52 1 2.0369 -7.4500 4.9635 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700568550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:25 Heat of formation + Delta-G solvation = -135.086660 kcal Electronic energy + Delta-G solvation = -30840.535959 eV Core-core repulsion = 26646.289993 eV Total energy + Delta-G solvation = -4194.245967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66841 -40.48222 -39.63792 -38.79060 -36.27275 -35.60749 -34.32663 -33.71104 -33.32974 -30.79518 -29.26904 -28.41314 -28.13911 -27.63597 -26.74349 -24.96700 -22.84264 -22.26397 -21.56607 -21.12801 -20.22386 -19.80115 -18.41865 -18.10150 -17.62013 -17.18909 -16.99789 -16.59603 -16.44551 -16.24857 -15.78707 -15.75843 -15.39895 -15.09785 -15.01436 -14.76972 -14.39961 -14.17393 -13.98988 -13.86572 -13.54847 -13.53038 -13.29531 -13.08829 -13.07544 -13.04925 -12.92256 -12.81051 -12.56097 -12.47218 -12.45773 -12.35978 -12.15383 -11.84803 -11.73546 -11.65847 -11.57126 -11.49415 -10.90798 -10.66087 -10.30467 -10.11618 -10.01915 -9.39177 -8.49878 -5.98409 1.36256 1.38074 1.49102 1.52713 1.76760 2.01216 2.26204 2.81467 3.00881 3.16406 3.29689 3.48241 3.63519 3.72220 3.90559 4.00838 4.08031 4.15198 4.18135 4.21176 4.26593 4.29234 4.31634 4.38500 4.44032 4.51798 4.70629 4.74297 4.75323 4.79046 4.81294 4.87446 4.90855 4.92116 5.01578 5.06734 5.13944 5.21725 5.27201 5.32659 5.34069 5.37905 5.37997 5.46191 5.80643 5.91279 6.08542 6.15549 6.52524 6.57928 7.10124 7.22255 7.52090 8.09675 8.67326 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.002862 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.609388 B = 9781.714883 C =12389.026982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.153 4.153 4 O -0.398 6.398 5 C 0.049 3.951 6 C 0.501 3.499 7 O -0.577 6.577 8 N -0.705 5.705 9 C 0.154 3.846 10 H 0.069 0.931 11 C 0.037 3.963 12 N -0.505 5.505 13 C 0.048 3.952 14 C 0.434 3.566 15 O -0.618 6.618 16 N -0.571 5.571 17 C -0.335 4.335 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.990 3.010 22 H -0.273 1.273 23 H -0.266 1.266 24 H -0.274 1.274 25 C 0.037 3.963 26 C -0.065 4.065 27 C -0.140 4.140 28 C -0.131 4.131 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.419 0.581 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.397 0.603 44 H 0.279 0.721 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.042 0.958 51 H 0.058 0.942 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.953 -4.235 -13.825 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 C -0.210 4.210 4 O -0.317 6.317 5 C -0.031 4.031 6 C 0.288 3.712 7 O -0.455 6.455 8 N -0.362 5.362 9 C 0.048 3.952 10 H 0.087 0.913 11 C -0.093 4.093 12 N -0.229 5.229 13 C -0.083 4.083 14 C 0.222 3.778 15 O -0.504 6.504 16 N -0.208 5.208 17 C -0.464 4.464 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.190 1.190 24 H -0.199 1.199 25 C -0.090 4.090 26 C -0.066 4.066 27 C -0.198 4.198 28 C -0.188 4.188 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.077 0.923 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.930 -2.996 -12.129 26.995 hybrid contribution 1.413 0.240 -0.849 1.666 sum -22.517 -2.756 -12.979 26.135 Atomic orbital electron populations 1.22287 0.94595 1.02999 1.02991 1.22438 0.94760 0.93918 0.87515 1.21912 1.01317 0.94643 1.03116 1.88063 1.87187 1.19011 1.37475 1.22365 1.03362 0.83512 0.93822 1.21170 0.76992 0.82567 0.90476 1.90751 1.52931 1.61777 1.40039 1.46038 1.67131 1.07829 1.15231 1.21636 0.91913 0.94866 0.86792 0.91261 1.23382 0.95094 0.94427 0.96374 1.65141 1.01198 1.02841 1.53769 1.21987 0.88731 0.96526 1.01049 1.20865 0.83197 0.90179 0.83591 1.90497 1.75176 1.34349 1.50407 1.41889 1.05388 1.17118 1.56444 1.19574 0.89107 0.96672 1.41059 0.90830 1.25996 0.97991 1.00539 0.96484 1.69654 1.14389 1.27644 1.44173 0.85035 0.77182 0.77677 0.78719 1.19872 1.18991 1.19937 1.23504 0.90575 0.95253 0.99649 1.21544 0.95461 0.90749 0.98855 1.21880 0.99984 1.03437 0.94455 1.21800 0.98632 1.02862 0.95534 0.93235 0.89424 0.91621 0.89716 0.93123 0.88507 0.93122 0.87800 0.86591 0.73965 0.92363 0.95108 0.86646 0.90941 0.76889 0.91179 0.88060 0.91785 0.89582 0.90836 0.91466 0.93915 0.92271 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.53 71.98 0.69 -1.43 16 2 C 0.07 1.14 3.34 30.59 0.10 1.24 16 3 C -0.15 -2.51 9.56 71.98 0.69 -1.82 16 4 O -0.40 -10.05 9.52 -129.94 -1.24 -11.28 16 5 C 0.05 0.91 6.23 71.24 0.44 1.35 16 6 C 0.50 14.20 7.91 87.66 0.69 14.89 16 7 O -0.58 -24.09 16.15 16.00 0.26 -23.83 16 8 N -0.70 -15.72 4.57 -438.30 -2.00 -17.72 16 9 C 0.15 4.36 3.04 45.88 0.14 4.50 16 10 H 0.07 2.43 7.13 -2.39 -0.02 2.41 16 11 C 0.04 1.37 5.03 86.45 0.43 1.80 16 12 N -0.50 -17.05 5.33 -886.06 -4.73 -21.78 16 13 C 0.05 1.73 5.55 85.56 0.47 2.21 16 14 C 0.43 21.72 7.50 87.65 0.66 22.38 16 15 O -0.62 -36.42 13.24 -3.08 -0.04 -36.46 16 16 N -0.57 -30.36 5.29 -306.99 -1.62 -31.98 16 17 C -0.33 -19.74 9.68 84.04 0.81 -18.93 16 18 H 0.07 4.69 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 20 N -0.92 -50.29 13.05 21.66 0.28 -50.00 16 21 Si 0.99 44.44 29.55 68.60 2.03 46.46 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.04 0.81 5.58 86.45 0.48 1.29 16 26 C -0.07 -1.24 1.03 -51.29 -0.05 -1.30 16 27 C -0.14 -1.47 7.12 71.98 0.51 -0.96 16 28 C -0.13 -2.39 8.24 71.98 0.59 -1.80 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.67 7.87 -2.39 -0.02 0.66 16 32 H 0.08 0.94 7.79 -2.39 -0.02 0.92 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.39 8.09 -2.39 -0.02 1.38 16 37 H 0.12 1.21 7.87 -2.39 -0.02 1.19 16 38 H 0.42 5.63 5.86 -92.71 -0.54 5.09 16 39 H 0.06 2.93 6.05 -2.38 -0.01 2.92 16 40 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 41 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.07 2.24 7.88 -2.38 -0.02 2.23 16 43 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 44 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.10 1.89 7.86 -2.39 -0.02 1.87 16 46 H 0.06 1.17 7.54 -2.39 -0.02 1.15 16 47 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.66 7.91 -2.38 -0.02 0.64 16 49 H 0.07 0.58 6.79 -2.38 -0.02 0.56 16 50 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -85.43 414.16 -0.28 -85.71 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.36 Total: 37.53 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 7.13 Total: 23.35 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -8.07 Total: -121.48 kcal Atomic # 8 Polarization: -70.56 SS G_CDS: -1.02 Total: -71.58 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -85.43 -0.28 -85.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700568550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.373 kcal (2) G-P(sol) polarization free energy of solvation -85.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds