Wall clock time and date at job start Wed Apr 1 2020 00:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 O 1.42900 * 109.46621 * 119.99584 * 2 1 3 5 5 C 1.42902 * 114.00043 * 90.00500 * 4 2 1 6 6 C 1.50692 * 109.47108 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00139 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00105 * 179.97438 * 6 5 4 9 9 C 1.46492 * 120.00298 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.28786 * 327.12751 * 9 8 6 11 11 C 1.54380 * 110.32689 * 89.36568 * 9 8 6 12 12 N 1.48551 * 104.59827 * 142.74835 * 11 9 8 13 13 C 1.46902 * 111.00056 * 200.96080 * 12 11 9 14 14 C 1.50706 * 109.47234 * 176.49010 * 13 12 11 15 15 O 1.21290 * 119.99392 * 6.06289 * 14 13 12 16 16 N 1.34771 * 119.99865 * 186.06194 * 14 13 12 17 17 C 1.37097 * 119.99824 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00179 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99775 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47628 * 89.99874 * 21 19 17 23 23 H 1.48503 * 109.47147 * 210.00107 * 21 19 17 24 24 H 1.48502 * 109.47214 * 329.99383 * 21 19 17 25 25 C 1.48564 * 104.22521 * 320.51927 * 12 11 9 26 26 C 1.54265 * 110.32574 * 205.00047 * 9 8 6 27 27 C 1.52994 * 110.32139 * 0.02562 * 26 9 8 28 28 C 1.53006 * 110.32170 * 122.10442 * 26 9 8 29 29 H 1.08996 * 109.46861 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47461 * 300.00571 * 1 2 3 31 31 H 1.09007 * 109.46655 * 60.00168 * 1 2 3 32 32 H 1.08994 * 109.46987 * 239.99624 * 2 1 3 33 33 H 1.09002 * 109.47339 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46931 * 299.99683 * 3 2 1 35 35 H 1.09001 * 109.47590 * 59.99287 * 3 2 1 36 36 H 1.09002 * 109.46935 * 59.99125 * 5 4 2 37 37 H 1.08995 * 109.46842 * 299.99978 * 5 4 2 38 38 H 0.97008 * 119.99510 * 0.02562 * 8 6 5 39 39 H 1.09001 * 110.41003 * 261.53212 * 11 9 8 40 40 H 1.09008 * 110.40576 * 23.84818 * 11 9 8 41 41 H 1.08995 * 109.47538 * 296.49187 * 13 12 11 42 42 H 1.08999 * 109.47101 * 56.49557 * 13 12 11 43 43 H 0.96999 * 120.00417 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99973 * 180.02562 * 20 19 17 45 45 H 1.09005 * 110.40642 * 280.70714 * 25 12 11 46 46 H 1.08989 * 110.41469 * 158.26144 * 25 12 11 47 47 H 1.09001 * 109.47769 * 59.99905 * 27 26 9 48 48 H 1.09005 * 109.47180 * 299.99168 * 27 26 9 49 49 H 1.09000 * 109.47080 * 180.02562 * 27 26 9 50 50 H 1.08993 * 109.47238 * 298.57805 * 28 26 9 51 51 H 1.08995 * 109.46960 * 58.57652 * 28 26 9 52 52 H 1.08999 * 109.46943 * 178.57320 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9888 6 6 2.7013 -2.6831 2.2747 7 8 2.8758 -1.9805 3.2478 8 7 2.9556 -4.0049 2.3436 9 6 3.4433 -4.5929 3.5935 10 1 4.0703 -3.8789 4.1277 11 6 2.2570 -5.0344 4.4773 12 7 2.7146 -6.2953 5.1155 13 6 1.5730 -7.0943 5.5807 14 6 2.0702 -8.4012 6.1430 15 8 3.2616 -8.5981 6.2566 16 7 1.1911 -9.3507 6.5195 17 6 1.6435 -10.5393 7.0315 18 1 2.7043 -10.7145 7.1335 19 6 0.7372 -11.5182 7.4203 20 7 -0.5536 -11.3044 7.2976 21 14 1.3535 -13.1374 8.1186 22 1 1.4832 -13.0231 9.5934 23 1 0.3895 -14.2177 7.7886 24 1 2.6779 -13.4588 7.5286 25 6 3.4553 -7.0017 4.0387 26 6 4.2316 -5.8872 3.3050 27 6 4.2658 -6.1644 1.8008 28 6 5.6547 -5.7766 3.8561 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.9319 -2.2466 0.1988 37 1 1.2538 -2.5433 0.7126 38 1 2.8163 -4.5667 1.5651 39 1 2.0458 -4.2796 5.2348 40 1 1.3734 -5.2149 3.8649 41 1 1.0372 -6.5459 6.3554 42 1 0.9020 -7.2906 4.7444 43 1 0.2383 -9.1930 6.4290 44 1 -1.1863 -11.9876 7.5693 45 1 2.7597 -7.4921 3.3576 46 1 4.1462 -7.7282 4.4661 47 1 4.7488 -5.3322 1.2888 48 1 3.2474 -6.2779 1.4290 49 1 4.8250 -7.0809 1.6129 50 1 6.1719 -4.9529 3.3641 51 1 5.6153 -5.5914 4.9295 52 1 6.1906 -6.7068 3.6673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700568552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:29 Heat of formation + Delta-G solvation = -110.736651 kcal Electronic energy + Delta-G solvation = -30478.323445 eV Core-core repulsion = 26285.133374 eV Total energy + Delta-G solvation = -4193.190071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61831 -39.31276 -38.28804 -37.67483 -34.79352 -33.81405 -33.37548 -33.13864 -31.23258 -29.71634 -28.18740 -27.59296 -27.36262 -26.61046 -25.14771 -23.72984 -21.74592 -21.53043 -20.55178 -19.28380 -19.16922 -17.88314 -17.47428 -17.33232 -16.40297 -16.11841 -15.80491 -15.36310 -15.10050 -14.79889 -14.67268 -14.54888 -14.12481 -13.88371 -13.74280 -13.51397 -13.34542 -13.20073 -13.06502 -12.78218 -12.72083 -12.58300 -12.36339 -12.23532 -12.03887 -11.86578 -11.82014 -11.57855 -11.49872 -11.22298 -11.14986 -11.03249 -10.80199 -10.73894 -10.44889 -10.39875 -10.22380 -10.06952 -9.92928 -9.48703 -9.22059 -8.45699 -8.04419 -7.93670 -6.42087 -3.82847 2.41906 2.52718 3.17471 3.26117 3.31553 3.59612 3.90409 4.08630 4.27740 4.35812 4.43982 4.54802 4.59735 4.63289 4.71138 4.74577 4.82484 4.83567 5.07206 5.18476 5.19243 5.24709 5.27234 5.28685 5.32496 5.38060 5.42524 5.51061 5.61448 5.71762 5.76759 5.76997 5.80443 5.84572 5.88369 5.92738 6.02833 6.08285 6.12783 6.26255 6.28520 6.42566 6.53285 6.72542 7.13777 7.21391 7.29498 7.54800 8.04368 8.05780 8.61354 9.17702 9.54019 10.05732 10.75685 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.001992 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.795225 B =14054.942229 C =14844.840324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.511 3.489 7 O -0.515 6.515 8 N -0.724 5.724 9 C 0.152 3.848 10 H 0.103 0.897 11 C 0.020 3.980 12 N -0.481 5.481 13 C 0.035 3.965 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.045 3.955 26 C -0.076 4.076 27 C -0.144 4.144 28 C -0.131 4.131 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.038 0.962 46 H 0.109 0.891 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.069 0.931 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 18.624 -19.153 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.275 6.275 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.389 6.389 8 N -0.380 5.380 9 C 0.047 3.953 10 H 0.121 0.879 11 C -0.109 4.109 12 N -0.205 5.205 13 C -0.096 4.096 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.082 4.082 26 C -0.077 4.077 27 C -0.202 4.202 28 C -0.189 4.189 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.127 0.873 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.088 0.912 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.998 19.081 -17.661 26.306 hybrid contribution -1.362 -1.403 -1.011 2.201 sum 2.635 17.679 -18.672 25.848 Atomic orbital electron populations 1.22321 0.95764 1.02482 1.02878 1.22181 0.93855 0.94073 0.87787 1.21854 1.01942 0.94208 1.02687 1.88081 1.86575 1.17603 1.35230 1.22232 1.01147 0.84329 0.95925 1.20267 0.78063 0.82338 0.89713 1.90748 1.50117 1.60571 1.37495 1.46255 1.68317 1.08045 1.15378 1.21795 0.94892 0.94847 0.83806 0.87905 1.23566 0.96119 0.93983 0.97232 1.65168 1.20520 1.03112 1.31681 1.22078 0.92497 0.94989 1.00082 1.19681 0.87191 0.85270 0.84951 1.90492 1.15800 1.80465 1.59377 1.41863 1.08442 1.14134 1.55633 1.19696 0.94616 0.90931 1.37540 0.87895 1.25262 0.94944 0.99953 0.97814 1.69614 1.00845 1.35729 1.48150 0.85858 0.78495 0.80772 0.79159 1.20386 1.20973 1.19443 1.23352 0.97601 0.95802 0.91492 1.21595 0.96658 0.94051 0.95441 1.21876 1.01358 1.02275 0.94680 1.21786 0.93626 1.01446 1.01998 0.92464 0.91473 0.91496 0.92078 0.91870 0.91131 0.91524 0.90387 0.90409 0.76170 0.89595 0.93751 0.89058 0.93518 0.77514 0.91892 0.94382 0.87285 0.92115 0.92751 0.91501 0.93127 0.91230 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.53 37.16 0.35 -0.74 16 2 C 0.08 0.55 3.34 -26.73 -0.09 0.46 16 3 C -0.15 -0.94 9.56 37.16 0.36 -0.59 16 4 O -0.36 -3.76 9.52 -55.14 -0.52 -4.29 16 5 C 0.04 0.36 6.23 36.00 0.22 0.58 16 6 C 0.51 5.89 7.91 -10.99 -0.09 5.80 16 7 O -0.52 -8.41 16.15 -14.35 -0.23 -8.64 16 8 N -0.72 -7.05 4.52 -52.47 -0.24 -7.28 16 9 C 0.15 1.86 3.04 -66.55 -0.20 1.66 16 10 H 0.10 1.45 7.13 -51.93 -0.37 1.08 16 11 C 0.02 0.29 6.21 -2.19 -0.01 0.27 16 12 N -0.48 -8.12 5.18 -231.41 -1.20 -9.32 16 13 C 0.04 0.64 5.39 -4.97 -0.03 0.62 16 14 C 0.44 10.42 7.43 -10.99 -0.08 10.34 16 15 O -0.58 -15.30 14.01 5.55 0.08 -15.22 16 16 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 21 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 C 0.05 0.71 4.67 -2.18 -0.01 0.70 16 26 C -0.08 -0.90 1.03 -153.13 -0.16 -1.06 16 27 C -0.14 -1.27 7.11 37.15 0.26 -1.00 16 28 C -0.13 -1.56 8.24 37.16 0.31 -1.25 16 29 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.32 7.79 -51.93 -0.40 -0.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 38 H 0.40 2.82 5.91 -40.82 -0.24 2.58 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.58 7.84 -51.92 -0.41 0.18 16 41 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 46 H 0.11 2.06 6.25 -51.94 -0.32 1.74 16 47 H 0.06 0.45 7.76 -51.93 -0.40 0.05 16 48 H 0.05 0.42 6.93 -51.93 -0.36 0.06 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 415.42 15.07 6.26 6.26 Total: -1.00 -33.97 415.42 -8.66 -42.62 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -9.04 Total: 10.12 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 0.59 Total: 7.85 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.77 Total: -54.69 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.68 Total: -28.15 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.97 -8.66 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700568552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.112 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds