Wall clock time and date at job start Wed Apr 1 2020 00:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 O 1.42900 * 109.46621 * 119.99584 * 2 1 3 5 5 C 1.42902 * 114.00043 * 90.00500 * 4 2 1 6 6 C 1.50692 * 109.47108 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00139 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00105 * 179.97438 * 6 5 4 9 9 C 1.46492 * 120.00298 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.28786 * 327.12751 * 9 8 6 11 11 C 1.54380 * 110.32689 * 89.36568 * 9 8 6 12 12 N 1.48551 * 104.59827 * 142.74835 * 11 9 8 13 13 C 1.46902 * 111.00056 * 200.96080 * 12 11 9 14 14 C 1.50706 * 109.47234 * 176.49010 * 13 12 11 15 15 O 1.21290 * 119.99392 * 6.06289 * 14 13 12 16 16 N 1.34771 * 119.99865 * 186.06194 * 14 13 12 17 17 C 1.37097 * 119.99824 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00179 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99775 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47628 * 89.99874 * 21 19 17 23 23 H 1.48503 * 109.47147 * 210.00107 * 21 19 17 24 24 H 1.48502 * 109.47214 * 329.99383 * 21 19 17 25 25 C 1.48564 * 104.22521 * 320.51927 * 12 11 9 26 26 C 1.54265 * 110.32574 * 205.00047 * 9 8 6 27 27 C 1.52994 * 110.32139 * 0.02562 * 26 9 8 28 28 C 1.53006 * 110.32170 * 122.10442 * 26 9 8 29 29 H 1.08996 * 109.46861 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47461 * 300.00571 * 1 2 3 31 31 H 1.09007 * 109.46655 * 60.00168 * 1 2 3 32 32 H 1.08994 * 109.46987 * 239.99624 * 2 1 3 33 33 H 1.09002 * 109.47339 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46931 * 299.99683 * 3 2 1 35 35 H 1.09001 * 109.47590 * 59.99287 * 3 2 1 36 36 H 1.09002 * 109.46935 * 59.99125 * 5 4 2 37 37 H 1.08995 * 109.46842 * 299.99978 * 5 4 2 38 38 H 0.97008 * 119.99510 * 0.02562 * 8 6 5 39 39 H 1.09001 * 110.41003 * 261.53212 * 11 9 8 40 40 H 1.09008 * 110.40576 * 23.84818 * 11 9 8 41 41 H 1.08995 * 109.47538 * 296.49187 * 13 12 11 42 42 H 1.08999 * 109.47101 * 56.49557 * 13 12 11 43 43 H 0.96999 * 120.00417 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99973 * 180.02562 * 20 19 17 45 45 H 1.09005 * 110.40642 * 280.70714 * 25 12 11 46 46 H 1.08989 * 110.41469 * 158.26144 * 25 12 11 47 47 H 1.09001 * 109.47769 * 59.99905 * 27 26 9 48 48 H 1.09005 * 109.47180 * 299.99168 * 27 26 9 49 49 H 1.09000 * 109.47080 * 180.02562 * 27 26 9 50 50 H 1.08993 * 109.47238 * 298.57805 * 28 26 9 51 51 H 1.08995 * 109.46960 * 58.57652 * 28 26 9 52 52 H 1.08999 * 109.46943 * 178.57320 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9888 6 6 2.7013 -2.6831 2.2747 7 8 2.8758 -1.9805 3.2478 8 7 2.9556 -4.0049 2.3436 9 6 3.4433 -4.5929 3.5935 10 1 4.0703 -3.8789 4.1277 11 6 2.2570 -5.0344 4.4773 12 7 2.7146 -6.2953 5.1155 13 6 1.5730 -7.0943 5.5807 14 6 2.0702 -8.4012 6.1430 15 8 3.2616 -8.5981 6.2566 16 7 1.1911 -9.3507 6.5195 17 6 1.6435 -10.5393 7.0315 18 1 2.7043 -10.7145 7.1335 19 6 0.7372 -11.5182 7.4203 20 7 -0.5536 -11.3044 7.2976 21 14 1.3535 -13.1374 8.1186 22 1 1.4832 -13.0231 9.5934 23 1 0.3895 -14.2177 7.7886 24 1 2.6779 -13.4588 7.5286 25 6 3.4553 -7.0017 4.0387 26 6 4.2316 -5.8872 3.3050 27 6 4.2658 -6.1644 1.8008 28 6 5.6547 -5.7766 3.8561 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.9319 -2.2466 0.1988 37 1 1.2538 -2.5433 0.7126 38 1 2.8163 -4.5667 1.5651 39 1 2.0458 -4.2796 5.2348 40 1 1.3734 -5.2149 3.8649 41 1 1.0372 -6.5459 6.3554 42 1 0.9020 -7.2906 4.7444 43 1 0.2383 -9.1930 6.4290 44 1 -1.1863 -11.9876 7.5693 45 1 2.7597 -7.4921 3.3576 46 1 4.1462 -7.7282 4.4661 47 1 4.7488 -5.3322 1.2888 48 1 3.2474 -6.2779 1.4290 49 1 4.8250 -7.0809 1.6129 50 1 6.1719 -4.9529 3.3641 51 1 5.6153 -5.5914 4.9295 52 1 6.1906 -6.7068 3.6673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700568552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:28 Heat of formation + Delta-G solvation = -135.995072 kcal Electronic energy + Delta-G solvation = -30479.418733 eV Core-core repulsion = 26285.133374 eV Total energy + Delta-G solvation = -4194.285358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65040 -40.44548 -39.60397 -38.74606 -36.21819 -35.59712 -34.39147 -33.67702 -33.26341 -30.81102 -29.21252 -28.40057 -28.11233 -27.56693 -26.83386 -25.12059 -22.72579 -22.22940 -21.50364 -21.02159 -20.25378 -19.87803 -18.31939 -18.06538 -17.66686 -17.20117 -16.89789 -16.56081 -16.44590 -16.21275 -15.73799 -15.68449 -15.49590 -15.19970 -14.92854 -14.60917 -14.31061 -14.24595 -14.06727 -13.75395 -13.64163 -13.49479 -13.33440 -13.23236 -13.04381 -13.02042 -12.91225 -12.87646 -12.61354 -12.41874 -12.37390 -12.32280 -12.12312 -11.88236 -11.76426 -11.62377 -11.53209 -11.44000 -10.86731 -10.62202 -10.33427 -10.12800 -10.01364 -9.41171 -8.46924 -5.95505 1.37533 1.41461 1.53896 1.56410 1.76767 2.03704 2.28193 2.77961 3.06283 3.19622 3.29427 3.44655 3.59029 3.75511 3.89961 4.03568 4.11670 4.16787 4.20888 4.23749 4.26407 4.30474 4.32468 4.35533 4.38345 4.50402 4.66390 4.71710 4.76461 4.78025 4.83313 4.85854 4.90644 4.92942 4.96097 4.96363 5.05405 5.21184 5.31076 5.32772 5.34789 5.36523 5.40871 5.43085 5.81694 5.90413 6.05689 6.18343 6.54646 6.59840 7.12378 7.22808 7.55147 8.10755 8.70556 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.001992 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.795225 B =14054.942229 C =14844.840324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.151 4.151 4 O -0.394 6.394 5 C 0.046 3.954 6 C 0.509 3.491 7 O -0.572 6.572 8 N -0.706 5.706 9 C 0.160 3.840 10 H 0.083 0.917 11 C 0.025 3.975 12 N -0.504 5.504 13 C 0.047 3.953 14 C 0.442 3.558 15 O -0.612 6.612 16 N -0.573 5.573 17 C -0.331 4.331 18 H 0.080 0.920 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.272 1.272 25 C 0.047 3.953 26 C -0.066 4.066 27 C -0.142 4.142 28 C -0.130 4.130 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.418 0.582 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.042 0.958 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 18.793 -21.968 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.314 6.314 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.450 6.450 8 N -0.363 5.363 9 C 0.054 3.946 10 H 0.101 0.899 11 C -0.104 4.104 12 N -0.228 5.228 13 C -0.085 4.085 14 C 0.230 3.770 15 O -0.497 6.497 16 N -0.211 5.211 17 C -0.461 4.461 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.081 4.081 26 C -0.067 4.067 27 C -0.199 4.199 28 C -0.187 4.187 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.259 0.741 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.061 0.939 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.321 19.244 -20.524 28.330 hybrid contribution -1.139 -1.404 -0.125 1.812 sum 2.183 17.839 -20.649 27.375 Atomic orbital electron populations 1.22317 0.95348 1.02737 1.02891 1.22403 0.94228 0.94134 0.87643 1.21895 1.01623 0.94305 1.02968 1.88047 1.87074 1.18887 1.37376 1.22371 1.03237 0.83454 0.94305 1.20998 0.76855 0.82233 0.90337 1.90731 1.52620 1.61881 1.39740 1.46060 1.67379 1.07896 1.14934 1.21483 0.93970 0.94518 0.84621 0.89864 1.23533 0.97375 0.92132 0.97340 1.65091 1.20452 1.04054 1.33203 1.21943 0.93185 0.92259 1.01080 1.20602 0.86557 0.86415 0.83471 1.90476 1.17431 1.81477 1.60345 1.41919 1.08788 1.14127 1.56230 1.19658 0.93937 0.92751 1.39733 0.90226 1.26038 0.95051 1.02727 0.97485 1.69676 1.01523 1.36834 1.48152 0.84926 0.78023 0.76938 0.78443 1.19832 1.19506 1.19668 1.23250 0.97213 0.96349 0.91285 1.21516 0.95640 0.92181 0.97395 1.21885 1.02877 1.03260 0.91876 1.21762 0.94192 1.02202 1.00551 0.92073 0.93314 0.89632 0.89558 0.92392 0.88887 0.93211 0.86955 0.87741 0.74088 0.90680 0.92162 0.87781 0.91170 0.77105 0.91329 0.93905 0.91156 0.89898 0.90998 0.91416 0.91193 0.93873 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.53 71.98 0.69 -1.12 16 2 C 0.07 0.86 3.34 30.60 0.10 0.96 16 3 C -0.15 -1.69 9.56 71.98 0.69 -1.01 16 4 O -0.39 -7.68 9.52 -129.94 -1.24 -8.92 16 5 C 0.05 0.60 6.23 71.23 0.44 1.04 16 6 C 0.51 10.78 7.91 87.65 0.69 11.47 16 7 O -0.57 -18.66 16.15 16.01 0.26 -18.40 16 8 N -0.71 -11.92 4.52 -438.31 -1.98 -13.91 16 9 C 0.16 3.77 3.04 45.89 0.14 3.91 16 10 H 0.08 2.36 7.13 -2.39 -0.02 2.34 16 11 C 0.03 0.69 6.21 86.45 0.54 1.22 16 12 N -0.50 -17.06 5.18 -886.05 -4.59 -21.66 16 13 C 0.05 1.69 5.39 85.56 0.46 2.15 16 14 C 0.44 21.27 7.43 87.66 0.65 21.92 16 15 O -0.61 -33.71 14.01 -3.06 -0.04 -33.76 16 16 N -0.57 -29.60 5.29 -306.99 -1.62 -31.23 16 17 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 20 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 C 0.05 1.47 4.67 86.45 0.40 1.87 16 26 C -0.07 -1.50 1.03 -51.29 -0.05 -1.55 16 27 C -0.14 -2.05 7.11 71.98 0.51 -1.54 16 28 C -0.13 -3.07 8.24 71.98 0.59 -2.48 16 29 H 0.06 0.57 7.87 -2.39 -0.02 0.55 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.09 0.57 7.79 -2.39 -0.02 0.55 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 0.71 8.08 -2.39 -0.02 0.69 16 37 H 0.10 0.82 7.87 -2.39 -0.02 0.81 16 38 H 0.42 4.19 5.91 -92.70 -0.55 3.64 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 1.45 7.84 -2.38 -0.02 1.43 16 41 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.07 2.21 7.98 -2.39 -0.02 2.19 16 43 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 44 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.04 1.28 7.64 -2.38 -0.02 1.26 16 46 H 0.07 2.77 6.25 -2.39 -0.01 2.76 16 47 H 0.08 0.88 7.76 -2.39 -0.02 0.86 16 48 H 0.07 0.81 6.93 -2.38 -0.02 0.80 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -77.47 415.42 -0.13 -77.61 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.36 Total: 36.16 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.14 Total: 18.58 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -7.91 Total: -116.30 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.02 Total: -61.07 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.47 -0.13 -77.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700568552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.389 kcal (2) G-P(sol) polarization free energy of solvation -77.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds