Wall clock time and date at job start Wed Apr 1 2020 00:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.52024 * 2 1 4 4 C 1.53038 * 109.50126 * 239.91675 * 2 1 3 5 5 C 1.53041 * 109.53708 * 178.68250 * 4 2 1 6 6 C 1.52764 * 109.38415 * 61.24012 * 5 4 2 7 7 N 1.46923 * 109.00938 * 305.58917 * 6 5 4 8 8 C 1.34769 * 120.62965 * 233.58456 * 7 6 5 9 9 O 1.21357 * 120.00278 * 182.54600 * 8 7 6 10 10 C 1.49453 * 120.00468 * 2.54304 * 8 7 6 11 11 O 1.21349 * 119.99277 * 354.74344 * 10 8 7 12 12 N 1.34770 * 120.00593 * 174.74788 * 10 8 7 13 13 C 1.46495 * 120.00377 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47538 * 179.97438 * 13 12 10 15 15 O 1.42904 * 109.46958 * 64.99788 * 14 13 12 16 16 C 1.42909 * 113.99471 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.46319 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47092 * 65.00666 * 17 16 15 19 19 C 1.46499 * 120.00374 * 89.99450 * 18 17 16 20 20 C 1.36942 * 119.99542 * 269.99316 * 18 17 16 21 21 H 1.08007 * 119.99940 * 138.24197 * 20 18 17 22 22 C 1.38815 * 120.00175 * 318.24553 * 20 18 17 23 23 N 1.31613 * 119.99991 * 162.07840 * 22 20 18 24 24 Si 1.86793 * 119.99796 * 342.07366 * 22 20 18 25 25 H 1.48503 * 109.47245 * 91.99305 * 24 22 20 26 26 H 1.48501 * 109.47288 * 211.99523 * 24 22 20 27 27 H 1.48504 * 109.47606 * 331.99478 * 24 22 20 28 28 C 1.46934 * 118.73915 * 53.30573 * 7 6 5 29 29 H 1.08995 * 109.47391 * 299.92259 * 1 2 3 30 30 H 1.09005 * 109.46667 * 59.92576 * 1 2 3 31 31 H 1.09004 * 109.46727 * 179.91744 * 1 2 3 32 32 H 1.09002 * 109.46017 * 298.70118 * 4 2 1 33 33 H 1.08997 * 109.45982 * 58.66528 * 4 2 1 34 34 H 1.08998 * 109.49512 * 181.31233 * 5 4 2 35 35 H 1.08991 * 109.49844 * 301.41585 * 5 4 2 36 36 H 1.09000 * 109.50998 * 185.70462 * 6 5 4 37 37 H 1.09003 * 109.42985 * 65.42318 * 6 5 4 38 38 H 0.97006 * 119.99788 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.47330 * 299.99934 * 13 12 10 40 40 H 1.09006 * 109.47148 * 59.99515 * 13 12 10 41 41 H 1.08996 * 109.47540 * 184.99930 * 14 13 12 42 42 H 1.09000 * 109.47347 * 305.00160 * 14 13 12 43 43 H 1.08995 * 109.47091 * 299.99627 * 16 15 14 44 44 H 1.08999 * 109.47254 * 60.00402 * 16 15 14 45 45 H 1.08998 * 109.46630 * 185.00046 * 17 16 15 46 46 H 1.08993 * 109.47282 * 304.99891 * 17 16 15 47 47 H 1.09003 * 109.46919 * 95.02163 * 19 18 17 48 48 H 1.09006 * 109.46759 * 215.01982 * 19 18 17 49 49 H 1.08995 * 109.46880 * 335.02094 * 19 18 17 50 50 H 0.96996 * 120.00070 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.58300 * 66.43353 * 28 7 6 52 52 H 1.08999 * 109.58269 * 186.71394 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5710 -0.6950 -1.2658 6 6 4.1056 -1.4215 -0.0329 7 7 3.5046 -0.8290 1.1698 8 6 4.2811 -0.3854 2.1780 9 8 3.7717 0.0595 3.1857 10 6 5.7695 -0.4414 2.0554 11 8 6.2792 -0.9727 1.0908 12 7 6.5457 0.0980 3.0161 13 6 8.0046 0.0436 2.8956 14 6 8.6424 0.7227 4.1092 15 8 8.3324 -0.0216 5.2891 16 6 8.8833 0.5312 6.4863 17 6 8.4892 -0.3420 7.6793 18 7 9.1071 -1.6633 7.5425 19 6 10.4341 -1.9138 8.1104 20 6 8.4441 -2.6642 6.8838 21 1 8.9805 -3.3127 6.2067 22 6 7.0828 -2.8453 7.0861 23 7 6.3767 -3.5452 6.2236 24 14 6.2532 -2.0959 8.5825 25 1 5.7273 -0.7512 8.2354 26 1 5.1328 -2.9687 9.0164 27 1 7.2398 -1.9719 9.6855 28 6 2.0412 -0.7237 1.2497 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8894 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6969 -1.7573 -1.2352 33 1 1.6583 -0.2245 -2.1388 34 1 3.9336 -1.1897 -2.1668 35 1 3.9160 0.3388 -1.2539 36 1 5.1896 -1.3158 0.0103 37 1 3.8414 -2.4773 -0.0912 38 1 6.1382 0.5229 3.7871 39 1 8.3269 -0.9968 2.8500 40 1 8.3137 0.5598 1.9867 41 1 9.7237 0.7613 3.9775 42 1 8.2518 1.7357 4.2056 43 1 9.9695 0.5661 6.4041 44 1 8.4972 1.5401 6.6318 45 1 8.8333 0.1262 8.6015 46 1 7.4050 -0.4492 7.7088 47 1 10.3278 -2.3540 9.1019 48 1 10.9818 -2.6005 7.4649 49 1 10.9799 -0.9735 8.1870 50 1 5.4256 -3.6720 6.3652 51 1 1.6053 -1.7216 1.2981 52 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700707095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:29 Heat of formation + Delta-G solvation = -72.940772 kcal Electronic energy + Delta-G solvation = -31295.693670 eV Core-core repulsion = 27104.142551 eV Total energy + Delta-G solvation = -4191.551119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85701 -38.91552 -37.69374 -37.61474 -35.69690 -34.67153 -33.56265 -31.98580 -31.49577 -30.02291 -28.31946 -27.27585 -26.10933 -25.99171 -23.71677 -22.84656 -22.42719 -21.77554 -20.63480 -20.54122 -19.69751 -17.52868 -16.96281 -16.66681 -16.44889 -16.03700 -15.79123 -15.39560 -15.29639 -14.94608 -14.64108 -14.46876 -14.27648 -13.99170 -13.69464 -13.54329 -13.52725 -13.10992 -12.97085 -12.77992 -12.75072 -12.44910 -12.28211 -12.01296 -11.90984 -11.69350 -11.49093 -11.42510 -11.24104 -11.04397 -11.00360 -10.84061 -10.64744 -10.62034 -10.51564 -10.32178 -9.71280 -9.50062 -9.06500 -9.00708 -8.87873 -8.70597 -8.35596 -6.63817 -5.80489 -3.28179 1.59273 2.44648 3.36909 3.40431 3.54308 3.58572 3.61352 4.16691 4.41622 4.57004 4.59234 4.66042 4.68946 4.91824 5.10202 5.14620 5.17003 5.26646 5.31931 5.33838 5.40900 5.51721 5.53104 5.56244 5.59199 5.66339 5.68054 5.77258 5.84355 5.85813 5.89904 5.94315 5.95530 5.99159 6.08891 6.16171 6.19581 6.27503 6.28163 6.33767 6.58885 6.70102 6.75530 6.80613 7.12383 7.41985 7.82919 7.91232 8.18000 8.23790 8.55846 9.11232 9.87105 10.25904 11.34923 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.002880 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.670897 B = 9720.504376 C =10601.329883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.131 4.131 6 C 0.042 3.958 7 N -0.581 5.581 8 C 0.510 3.490 9 O -0.518 6.518 10 C 0.515 3.485 11 O -0.519 6.519 12 N -0.677 5.677 13 C 0.124 3.876 14 C 0.044 3.956 15 O -0.342 6.342 16 C 0.049 3.951 17 C 0.131 3.869 18 N -0.607 5.607 19 C 0.126 3.874 20 C -0.254 4.254 21 H 0.073 0.927 22 C 0.044 3.956 23 N -0.900 5.900 24 Si 0.879 3.121 25 H -0.285 1.285 26 H -0.304 1.304 27 H -0.273 1.273 28 C 0.111 3.889 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.164 0.836 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.030 0.970 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.008 0.992 48 H 0.038 0.962 49 H 0.027 0.973 50 H 0.260 0.740 51 H 0.071 0.929 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 11.143 -13.916 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.170 4.170 6 C -0.078 4.078 7 N -0.315 5.315 8 C 0.293 3.707 9 O -0.394 6.394 10 C 0.297 3.703 11 O -0.398 6.398 12 N -0.328 5.328 13 C 0.001 3.999 14 C -0.034 4.034 15 O -0.260 6.260 16 C -0.031 4.031 17 C 0.005 3.995 18 N -0.332 5.332 19 C -0.019 4.019 20 C -0.382 4.382 21 H 0.090 0.910 22 C -0.156 4.156 23 N -0.541 5.541 24 Si 0.710 3.290 25 H -0.213 1.213 26 H -0.232 1.232 27 H -0.198 1.198 28 C -0.012 4.012 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.179 0.821 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.026 0.974 48 H 0.057 0.943 49 H 0.046 0.954 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.834 10.736 -14.043 18.326 hybrid contribution -0.776 0.769 1.091 1.544 sum -5.610 11.505 -12.952 18.210 Atomic orbital electron populations 1.21766 0.94316 1.02152 1.02020 1.21494 0.95943 1.00059 0.94982 0.90848 1.21637 0.95877 1.00747 0.97217 1.21822 0.95429 1.01372 0.98333 1.23323 1.05887 0.96379 0.82226 1.47891 1.06402 1.59040 1.18151 1.20059 0.88014 0.79085 0.83575 1.90771 1.74949 1.44994 1.28652 1.19981 0.87865 0.79208 0.83289 1.90215 1.74318 1.44579 1.30702 1.45647 1.07207 1.56301 1.23602 1.21530 0.78181 1.03495 0.96737 1.22656 0.98979 0.94547 0.87213 1.88348 1.74525 1.49946 1.13172 1.23295 0.96621 0.95627 0.87510 1.21359 0.98830 0.86461 0.92824 1.43955 1.17401 1.06978 1.64843 1.21069 0.87243 0.97566 0.96055 1.18574 0.91757 1.09160 1.18747 0.90973 1.25427 0.96860 0.96546 0.96809 1.69821 1.06788 1.42865 1.34615 0.86937 0.78641 0.77725 0.85711 1.21293 1.23194 1.19836 1.21789 0.79050 1.01264 0.99062 0.92330 0.92338 0.92379 0.91721 0.91876 0.90641 0.91862 0.82051 0.91758 0.74630 0.89266 0.90042 0.92147 0.93715 0.94338 0.95209 0.92871 0.91931 0.97419 0.94342 0.95435 0.93050 0.91067 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.11 -0.98 2.87 -90.50 -0.26 -1.24 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -0.99 5.17 -26.69 -0.14 -1.13 16 5 C -0.13 -1.25 6.06 -26.83 -0.16 -1.41 16 6 C 0.04 0.52 6.23 -3.93 -0.02 0.50 16 7 N -0.58 -8.22 2.98 -173.53 -0.52 -8.73 16 8 C 0.51 8.68 7.76 -11.59 -0.09 8.59 16 9 O -0.52 -10.03 15.91 5.49 0.09 -9.94 16 10 C 0.51 8.79 7.81 -11.59 -0.09 8.70 16 11 O -0.52 -8.95 13.01 5.50 0.07 -8.87 16 12 N -0.68 -11.23 5.49 -60.73 -0.33 -11.57 16 13 C 0.12 1.86 6.06 -4.05 -0.02 1.83 16 14 C 0.04 0.65 6.07 37.15 0.23 0.87 16 15 O -0.34 -6.92 9.76 -35.23 -0.34 -7.27 16 16 C 0.05 0.90 6.28 37.16 0.23 1.13 16 17 C 0.13 2.84 4.86 -4.04 -0.02 2.82 16 18 N -0.61 -14.72 2.40 -181.11 -0.43 -15.16 16 19 C 0.13 2.55 10.69 59.85 0.64 3.19 16 20 C -0.25 -7.27 9.44 -15.06 -0.14 -7.41 16 21 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 22 C 0.04 1.31 5.35 -17.43 -0.09 1.21 16 23 N -0.90 -28.40 13.97 55.49 0.78 -27.62 16 24 Si 0.88 23.16 25.06 -169.99 -4.26 18.90 16 25 H -0.28 -7.32 6.59 56.52 0.37 -6.95 16 26 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 27 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.11 1.32 5.71 -3.70 -0.02 1.30 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.16 2.29 3.73 -57.15 -0.21 2.08 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.42 7.09 7.96 -40.82 -0.32 6.76 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 46 H 0.06 1.52 3.40 -51.93 -0.18 1.35 16 47 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 49 H 0.03 0.46 8.03 -51.93 -0.42 0.05 16 50 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.09 1.23 7.02 -51.93 -0.36 0.86 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -34.47 410.03 -7.51 -41.98 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -9.11 Total: 3.89 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 0.37 Total: 18.21 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.51 Total: -63.08 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.19 Total: -26.09 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.26 Total: 18.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.47 -7.51 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700707095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.962 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds