Wall clock time and date at job start Wed Apr 1 2020 00:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.52024 * 2 1 4 4 C 1.53038 * 109.50126 * 239.91675 * 2 1 3 5 5 C 1.53041 * 109.53708 * 178.68250 * 4 2 1 6 6 C 1.52764 * 109.38415 * 61.24012 * 5 4 2 7 7 N 1.46923 * 109.00938 * 305.58917 * 6 5 4 8 8 C 1.34769 * 120.62965 * 233.58456 * 7 6 5 9 9 O 1.21357 * 120.00278 * 182.54600 * 8 7 6 10 10 C 1.49453 * 120.00468 * 2.54304 * 8 7 6 11 11 O 1.21349 * 119.99277 * 354.74344 * 10 8 7 12 12 N 1.34770 * 120.00593 * 174.74788 * 10 8 7 13 13 C 1.46495 * 120.00377 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47538 * 179.97438 * 13 12 10 15 15 O 1.42904 * 109.46958 * 64.99788 * 14 13 12 16 16 C 1.42909 * 113.99471 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.46319 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47092 * 65.00666 * 17 16 15 19 19 C 1.46499 * 120.00374 * 89.99450 * 18 17 16 20 20 C 1.36942 * 119.99542 * 269.99316 * 18 17 16 21 21 H 1.08007 * 119.99940 * 138.24197 * 20 18 17 22 22 C 1.38815 * 120.00175 * 318.24553 * 20 18 17 23 23 N 1.31613 * 119.99991 * 162.07840 * 22 20 18 24 24 Si 1.86793 * 119.99796 * 342.07366 * 22 20 18 25 25 H 1.48503 * 109.47245 * 91.99305 * 24 22 20 26 26 H 1.48501 * 109.47288 * 211.99523 * 24 22 20 27 27 H 1.48504 * 109.47606 * 331.99478 * 24 22 20 28 28 C 1.46934 * 118.73915 * 53.30573 * 7 6 5 29 29 H 1.08995 * 109.47391 * 299.92259 * 1 2 3 30 30 H 1.09005 * 109.46667 * 59.92576 * 1 2 3 31 31 H 1.09004 * 109.46727 * 179.91744 * 1 2 3 32 32 H 1.09002 * 109.46017 * 298.70118 * 4 2 1 33 33 H 1.08997 * 109.45982 * 58.66528 * 4 2 1 34 34 H 1.08998 * 109.49512 * 181.31233 * 5 4 2 35 35 H 1.08991 * 109.49844 * 301.41585 * 5 4 2 36 36 H 1.09000 * 109.50998 * 185.70462 * 6 5 4 37 37 H 1.09003 * 109.42985 * 65.42318 * 6 5 4 38 38 H 0.97006 * 119.99788 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.47330 * 299.99934 * 13 12 10 40 40 H 1.09006 * 109.47148 * 59.99515 * 13 12 10 41 41 H 1.08996 * 109.47540 * 184.99930 * 14 13 12 42 42 H 1.09000 * 109.47347 * 305.00160 * 14 13 12 43 43 H 1.08995 * 109.47091 * 299.99627 * 16 15 14 44 44 H 1.08999 * 109.47254 * 60.00402 * 16 15 14 45 45 H 1.08998 * 109.46630 * 185.00046 * 17 16 15 46 46 H 1.08993 * 109.47282 * 304.99891 * 17 16 15 47 47 H 1.09003 * 109.46919 * 95.02163 * 19 18 17 48 48 H 1.09006 * 109.46759 * 215.01982 * 19 18 17 49 49 H 1.08995 * 109.46880 * 335.02094 * 19 18 17 50 50 H 0.96996 * 120.00070 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.58300 * 66.43353 * 28 7 6 52 52 H 1.08999 * 109.58269 * 186.71394 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5710 -0.6950 -1.2658 6 6 4.1056 -1.4215 -0.0329 7 7 3.5046 -0.8290 1.1698 8 6 4.2811 -0.3854 2.1780 9 8 3.7717 0.0595 3.1857 10 6 5.7695 -0.4414 2.0554 11 8 6.2792 -0.9727 1.0908 12 7 6.5457 0.0980 3.0161 13 6 8.0046 0.0436 2.8956 14 6 8.6424 0.7227 4.1092 15 8 8.3324 -0.0216 5.2891 16 6 8.8833 0.5312 6.4863 17 6 8.4892 -0.3420 7.6793 18 7 9.1071 -1.6633 7.5425 19 6 10.4341 -1.9138 8.1104 20 6 8.4441 -2.6642 6.8838 21 1 8.9805 -3.3127 6.2067 22 6 7.0828 -2.8453 7.0861 23 7 6.3767 -3.5452 6.2236 24 14 6.2532 -2.0959 8.5825 25 1 5.7273 -0.7512 8.2354 26 1 5.1328 -2.9687 9.0164 27 1 7.2398 -1.9719 9.6855 28 6 2.0412 -0.7237 1.2497 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8894 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6969 -1.7573 -1.2352 33 1 1.6583 -0.2245 -2.1388 34 1 3.9336 -1.1897 -2.1668 35 1 3.9160 0.3388 -1.2539 36 1 5.1896 -1.3158 0.0103 37 1 3.8414 -2.4773 -0.0912 38 1 6.1382 0.5229 3.7871 39 1 8.3269 -0.9968 2.8500 40 1 8.3137 0.5598 1.9867 41 1 9.7237 0.7613 3.9775 42 1 8.2518 1.7357 4.2056 43 1 9.9695 0.5661 6.4041 44 1 8.4972 1.5401 6.6318 45 1 8.8333 0.1262 8.6015 46 1 7.4050 -0.4492 7.7088 47 1 10.3278 -2.3540 9.1019 48 1 10.9818 -2.6005 7.4649 49 1 10.9799 -0.9735 8.1870 50 1 5.4256 -3.6720 6.3652 51 1 1.6053 -1.7216 1.2981 52 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700707095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:28 Heat of formation + Delta-G solvation = -98.403575 kcal Electronic energy + Delta-G solvation = -31296.797819 eV Core-core repulsion = 27104.142551 eV Total energy + Delta-G solvation = -4192.655269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.10486 -40.09369 -39.07689 -38.83302 -37.37525 -36.01713 -34.61968 -33.67065 -32.86794 -31.42165 -29.79147 -28.20585 -27.94876 -27.08641 -24.89724 -24.53434 -23.30240 -22.94832 -22.46976 -21.68087 -20.68554 -18.81781 -18.64062 -18.24590 -17.87981 -17.38541 -17.11982 -16.95330 -16.39381 -16.26690 -15.92385 -15.59853 -15.36731 -15.28139 -15.27025 -15.01166 -14.71628 -14.54238 -14.45117 -14.09293 -13.85643 -13.76762 -13.61774 -13.26798 -13.17762 -12.91622 -12.77296 -12.69704 -12.46222 -12.44735 -12.31075 -12.11912 -12.04581 -11.84521 -11.73452 -11.65378 -11.44365 -11.35048 -10.59365 -10.37970 -10.31343 -10.09107 -9.83953 -8.61507 -8.08605 -5.52291 0.25131 1.23840 1.30845 1.39314 1.50463 2.03884 2.42093 2.47621 2.89383 3.16404 3.21958 3.53493 3.72087 3.80809 3.90664 3.94201 4.08312 4.20494 4.29031 4.34678 4.37471 4.47052 4.52172 4.53125 4.57792 4.60515 4.63269 4.75118 4.76666 4.77424 4.81647 4.85529 4.87460 4.92366 4.98756 5.04283 5.12874 5.14903 5.17206 5.17939 5.27230 5.33604 5.44846 5.53034 5.90087 6.02377 6.14590 6.24958 6.56377 6.63154 6.86022 7.09978 7.72042 8.12928 9.10296 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.002880 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.670897 B = 9720.504376 C =10601.329883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.125 4.125 6 C 0.038 3.962 7 N -0.574 5.574 8 C 0.501 3.499 9 O -0.553 6.553 10 C 0.508 3.492 11 O -0.526 6.526 12 N -0.679 5.679 13 C 0.124 3.876 14 C 0.045 3.955 15 O -0.391 6.391 16 C 0.052 3.948 17 C 0.120 3.880 18 N -0.622 5.622 19 C 0.124 3.876 20 C -0.232 4.232 21 H 0.028 0.972 22 C -0.013 4.013 23 N -0.950 5.950 24 Si 0.943 3.057 25 H -0.276 1.276 26 H -0.316 1.316 27 H -0.256 1.256 28 C 0.103 3.897 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.147 0.853 37 H 0.068 0.932 38 H 0.414 0.586 39 H 0.054 0.946 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.031 0.969 49 H 0.068 0.932 50 H 0.254 0.746 51 H 0.079 0.921 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 13.489 -14.230 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.163 4.163 6 C -0.083 4.083 7 N -0.306 5.306 8 C 0.283 3.717 9 O -0.431 6.431 10 C 0.290 3.710 11 O -0.406 6.406 12 N -0.329 5.329 13 C 0.002 3.998 14 C -0.031 4.031 15 O -0.311 6.311 16 C -0.027 4.027 17 C -0.005 4.005 18 N -0.347 5.347 19 C -0.020 4.020 20 C -0.362 4.362 21 H 0.045 0.955 22 C -0.209 4.209 23 N -0.595 5.595 24 Si 0.773 3.227 25 H -0.204 1.204 26 H -0.246 1.246 27 H -0.180 1.180 28 C -0.018 4.018 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.250 0.750 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.049 0.951 49 H 0.087 0.913 50 H 0.062 0.938 51 H 0.097 0.903 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.459 13.112 -14.370 19.957 hybrid contribution -0.762 0.014 1.102 1.340 sum -5.221 13.126 -13.268 19.380 Atomic orbital electron populations 1.21742 0.92636 1.02763 1.02680 1.21458 0.97213 0.99265 0.93851 0.91527 1.21638 0.94791 1.01237 0.97412 1.21788 0.96362 1.00840 0.97279 1.23364 1.05034 0.97025 0.82830 1.48101 1.07310 1.57444 1.17778 1.20172 0.88228 0.79405 0.83874 1.90738 1.75364 1.47080 1.29966 1.20136 0.88147 0.79287 0.83430 1.90241 1.74640 1.44825 1.30916 1.45781 1.07887 1.55984 1.23256 1.21647 0.77378 1.01991 0.98805 1.22841 1.00360 0.95050 0.84882 1.88277 1.75481 1.52190 1.15122 1.23188 0.97668 0.96115 0.85724 1.21529 0.97016 0.85815 0.96118 1.44099 1.18477 1.07291 1.64872 1.21172 0.85499 0.99685 0.95621 1.18347 0.91558 1.09168 1.17167 0.95482 1.26009 0.97686 0.97871 0.99319 1.69986 1.06691 1.46002 1.36794 0.85889 0.77435 0.76887 0.82464 1.20377 1.24581 1.18003 1.22017 0.77713 1.01922 1.00151 0.92643 0.90732 0.91798 0.91146 0.89733 0.88678 0.92230 0.83725 0.91344 0.75003 0.92784 0.86768 0.89888 0.90812 0.92575 0.91819 0.89306 0.94892 0.97000 0.95072 0.91344 0.93763 0.90293 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.18 16 2 C -0.10 -1.71 2.87 -10.71 -0.03 -1.74 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.65 5.17 30.62 0.16 -1.50 16 5 C -0.12 -2.18 6.06 30.53 0.19 -2.00 16 6 C 0.04 0.93 6.23 86.22 0.54 1.47 16 7 N -0.57 -16.66 2.98 -821.28 -2.45 -19.11 16 8 C 0.50 17.86 7.76 87.27 0.68 18.53 16 9 O -0.55 -22.55 15.91 -3.27 -0.05 -22.60 16 10 C 0.51 18.10 7.81 87.27 0.68 18.79 16 11 O -0.53 -18.80 13.01 -3.24 -0.04 -18.85 16 12 N -0.68 -23.19 5.49 -464.42 -2.55 -25.74 16 13 C 0.12 3.73 6.06 86.38 0.52 4.26 16 14 C 0.05 1.26 6.07 71.98 0.44 1.69 16 15 O -0.39 -15.49 9.76 -148.98 -1.45 -16.94 16 16 C 0.05 1.73 6.28 71.98 0.45 2.18 16 17 C 0.12 4.87 4.86 86.38 0.42 5.29 16 18 N -0.62 -29.33 2.40 -726.92 -1.74 -31.07 16 19 C 0.12 4.73 10.69 127.77 1.37 6.10 16 20 C -0.23 -13.59 9.44 84.03 0.79 -12.80 16 21 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 22 C -0.01 -0.80 5.35 84.86 0.45 -0.34 16 23 N -0.95 -62.75 13.97 21.65 0.30 -62.44 16 24 Si 0.94 48.75 25.06 68.60 1.72 50.47 16 25 H -0.28 -13.74 6.59 99.48 0.66 -13.09 16 26 H -0.32 -16.82 7.11 99.48 0.71 -16.11 16 27 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 28 C 0.10 2.50 5.71 86.36 0.49 2.99 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.15 4.20 3.73 -85.13 -0.32 3.89 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 14.53 7.96 -92.70 -0.74 13.79 16 39 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 2.93 8.07 -2.39 -0.02 2.91 16 46 H 0.03 1.55 3.40 -2.39 -0.01 1.54 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.03 1.21 8.08 -2.38 -0.02 1.19 16 49 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 50 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 51 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.08 2.12 7.02 -2.39 -0.02 2.10 16 Total: -1.00 -79.01 410.03 1.35 -77.66 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.19 Total: 26.89 kcal Atomic # 6 Polarization: 33.93 SS G_CDS: 7.81 Total: 41.74 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -6.44 Total: -138.36 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -1.55 Total: -58.39 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.72 Total: 50.47 kcal Total: -79.01 1.35 -77.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700707095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.745 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds