Wall clock time and date at job start Wed Apr 1 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.52208 * 2 1 4 4 C 1.53036 * 109.49941 * 120.07971 * 2 1 3 5 5 C 1.53042 * 109.53785 * 181.31618 * 4 2 1 6 6 C 1.53198 * 109.31411 * 298.63851 * 5 4 2 7 7 N 1.46929 * 108.77514 * 54.63211 * 6 5 4 8 8 C 1.34772 * 120.62987 * 126.36596 * 7 6 5 9 9 O 1.21353 * 120.00348 * 188.23153 * 8 7 6 10 10 C 1.49451 * 120.00130 * 8.23824 * 8 7 6 11 11 O 1.21349 * 119.99629 * 6.79326 * 10 8 7 12 12 N 1.34773 * 120.00065 * 186.79833 * 10 8 7 13 13 C 1.46501 * 120.00096 * 179.97438 * 12 10 8 14 14 C 1.52990 * 109.47437 * 180.02562 * 13 12 10 15 15 O 1.42898 * 109.47487 * 64.99559 * 14 13 12 16 16 C 1.42901 * 114.00289 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47173 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.46800 * 65.00252 * 17 16 15 19 19 C 1.46501 * 119.99727 * 90.00286 * 18 17 16 20 20 C 1.36937 * 119.99756 * 269.99516 * 18 17 16 21 21 H 1.08002 * 120.00107 * 19.54019 * 20 18 17 22 22 C 1.38821 * 119.99751 * 199.53121 * 20 18 17 23 23 N 1.31617 * 119.99969 * 13.73747 * 22 20 18 24 24 Si 1.86801 * 119.99635 * 193.73726 * 22 20 18 25 25 H 1.48495 * 109.47250 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46725 * 120.00416 * 24 22 20 27 27 H 1.48498 * 109.46774 * 239.99936 * 24 22 20 28 28 C 1.46933 * 118.73882 * 306.64537 * 7 6 5 29 29 H 1.09000 * 109.46727 * 299.91661 * 1 2 3 30 30 H 1.08999 * 109.47359 * 59.91670 * 1 2 3 31 31 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.45538 * 61.30196 * 4 2 1 33 33 H 1.08992 * 109.46713 * 301.33964 * 4 2 1 34 34 H 1.09002 * 109.49919 * 178.68850 * 5 4 2 35 35 H 1.09000 * 109.52346 * 58.60099 * 5 4 2 36 36 H 1.09002 * 109.58351 * 294.84937 * 6 5 4 37 37 H 1.08990 * 109.58904 * 174.42067 * 6 5 4 38 38 H 0.96998 * 120.00526 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47302 * 59.99449 * 13 12 10 40 40 H 1.09002 * 109.46812 * 300.00052 * 13 12 10 41 41 H 1.09004 * 109.47275 * 305.00042 * 14 13 12 42 42 H 1.09007 * 109.47712 * 184.99892 * 14 13 12 43 43 H 1.09004 * 109.46922 * 60.00102 * 16 15 14 44 44 H 1.09001 * 109.47112 * 300.00363 * 16 15 14 45 45 H 1.09001 * 109.46846 * 185.00011 * 17 16 15 46 46 H 1.09000 * 109.46897 * 305.00193 * 17 16 15 47 47 H 1.08997 * 109.47364 * 95.25564 * 19 18 17 48 48 H 1.09002 * 109.46721 * 215.24989 * 19 18 17 49 49 H 1.08992 * 109.47276 * 335.24854 * 19 18 17 50 50 H 0.96993 * 119.99983 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58243 * 173.14401 * 28 7 6 52 52 H 1.08997 * 109.58225 * 293.56728 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7230 1.2483 5 6 3.5709 -0.6949 1.2659 6 6 4.1054 -1.4266 0.0306 7 7 3.5046 -0.8290 -1.1697 8 6 4.2811 -0.3854 -2.1780 9 8 3.7878 0.2391 -3.0942 10 6 5.7496 -0.6625 -2.1679 11 8 6.2240 -1.3895 -1.3200 12 7 6.5470 -0.1049 -3.1004 13 6 7.9867 -0.3762 -3.0902 14 6 8.6551 0.3731 -4.2445 15 8 8.5341 1.7811 -4.0320 16 6 9.1284 2.5771 -5.0592 17 6 8.9403 4.0592 -4.7290 18 7 9.6816 4.3854 -3.5082 19 6 11.0738 4.8334 -3.5943 20 6 9.0731 4.2716 -2.2867 21 1 8.1887 3.6611 -2.1787 22 6 9.5930 4.9409 -1.1873 23 7 10.4921 5.8870 -1.3575 24 14 9.0166 4.4988 0.5337 25 1 8.0094 3.4105 0.4540 26 1 10.1757 4.0418 1.3417 27 1 8.4070 5.6922 1.1734 28 6 2.0415 -0.7186 -1.2472 29 1 -0.3633 0.5125 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6968 -1.7573 1.2352 33 1 1.6583 -0.2246 2.1389 34 1 3.9336 -1.1897 2.1670 35 1 3.9164 0.3388 1.2542 36 1 3.8376 -2.4817 0.0866 37 1 5.1896 -1.3245 -0.0140 38 1 6.1679 0.4759 -3.7784 39 1 8.1556 -1.4468 -3.2053 40 1 8.4128 -0.0408 -2.1446 41 1 8.1689 0.1042 -5.1822 42 1 9.7099 0.1021 -4.2913 43 1 8.6516 2.3537 -6.0136 44 1 10.1930 2.3518 -5.1234 45 1 9.3142 4.6655 -5.5541 46 1 7.8809 4.2659 -4.5771 47 1 11.1059 5.9228 -3.5890 48 1 11.6324 4.4493 -2.7407 49 1 11.5188 4.4611 -4.5169 50 1 10.8551 6.3549 -0.5893 51 1 1.7645 -0.1495 -2.1347 52 1 1.6021 -1.7148 -1.2976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700707097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:33 Heat of formation + Delta-G solvation = -82.815414 kcal Electronic energy + Delta-G solvation = -30963.268758 eV Core-core repulsion = 26771.289442 eV Total energy + Delta-G solvation = -4191.979315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.03192 -39.09717 -37.83214 -37.70847 -35.59441 -34.76087 -33.74636 -32.09825 -31.47284 -29.81227 -27.96873 -27.37504 -26.23253 -25.76096 -23.87925 -23.06764 -22.54411 -21.94117 -20.68112 -20.29231 -19.81279 -17.71181 -17.16495 -16.69744 -16.40634 -16.28829 -15.85601 -15.49634 -15.35097 -14.95751 -14.65147 -14.40424 -14.37020 -14.12387 -13.81933 -13.63037 -13.44024 -13.24120 -13.04699 -12.87984 -12.70541 -12.39162 -12.21450 -12.10284 -11.80242 -11.60350 -11.34799 -11.31872 -11.11838 -10.99068 -10.83573 -10.81642 -10.75225 -10.66007 -10.39321 -10.25552 -9.83011 -9.71833 -9.34306 -9.15761 -9.07557 -8.90481 -8.41706 -6.66908 -5.59458 -3.01074 1.37053 2.23740 3.15147 3.39885 3.45913 3.53266 3.57291 4.04769 4.27288 4.45189 4.51096 4.59803 4.61975 4.80762 5.00262 5.04336 5.13512 5.20044 5.24330 5.31528 5.41037 5.45938 5.47506 5.50265 5.50959 5.55193 5.59968 5.70056 5.73524 5.82329 5.84914 5.88124 5.90197 5.95654 6.09208 6.12555 6.16051 6.19455 6.38979 6.42619 6.75751 6.84605 6.91526 7.21247 7.46704 7.67444 7.71346 7.80217 7.95478 8.01282 8.51891 9.37793 10.00238 10.47194 11.46784 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.002996 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.219770 B = 9343.799039 C =10640.933530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.138 4.138 6 C 0.068 3.932 7 N -0.583 5.583 8 C 0.510 3.490 9 O -0.521 6.521 10 C 0.508 3.492 11 O -0.519 6.519 12 N -0.682 5.682 13 C 0.121 3.879 14 C 0.046 3.954 15 O -0.359 6.359 16 C 0.044 3.956 17 C 0.149 3.851 18 N -0.599 5.599 19 C 0.164 3.836 20 C -0.228 4.228 21 H 0.074 0.926 22 C -0.008 4.008 23 N -0.917 5.917 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.113 3.887 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.143 0.857 38 H 0.417 0.583 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.029 0.971 48 H 0.044 0.956 49 H -0.007 1.007 50 H 0.248 0.752 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -16.975 -1.649 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.177 4.177 6 C -0.053 4.053 7 N -0.317 5.317 8 C 0.293 3.707 9 O -0.396 6.396 10 C 0.289 3.711 11 O -0.398 6.398 12 N -0.334 5.334 13 C -0.002 4.002 14 C -0.032 4.032 15 O -0.277 6.277 16 C -0.035 4.035 17 C 0.021 3.979 18 N -0.321 5.321 19 C 0.019 3.981 20 C -0.358 4.358 21 H 0.092 0.908 22 C -0.204 4.204 23 N -0.564 5.564 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.009 4.009 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.254 0.746 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.011 0.989 50 H 0.059 0.941 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.313 -16.958 -1.273 22.228 hybrid contribution -0.254 -0.065 0.554 0.613 sum -14.567 -17.023 -0.719 22.416 Atomic orbital electron populations 1.21757 0.94188 1.01983 1.02245 1.21442 0.96062 1.00504 0.94818 0.90472 1.21617 0.95627 1.00608 0.97470 1.21975 0.95687 1.01838 0.98163 1.22899 1.03651 0.96362 0.82370 1.47922 1.06627 1.59126 1.17994 1.20120 0.87714 0.79905 0.82986 1.90757 1.74936 1.38154 1.35787 1.20034 0.87485 0.81339 0.82214 1.90472 1.75845 1.37679 1.35769 1.45734 1.08315 1.48194 1.31188 1.21579 0.78523 0.99285 1.00809 1.22646 0.99663 0.84565 0.96337 1.88151 1.78637 1.13718 1.47234 1.23527 0.95990 0.95409 0.88618 1.20778 0.97168 0.89914 0.90028 1.43905 1.09023 1.77744 1.01422 1.20805 0.83995 0.97895 0.95398 1.19325 1.09946 1.21527 0.84980 0.90800 1.24928 1.00047 0.97165 0.98303 1.70096 1.33306 1.24513 1.28477 0.86228 0.77873 0.77626 0.85202 1.20396 1.21851 1.22040 1.21707 0.78629 1.01034 0.99534 0.92187 0.92280 0.92507 0.91788 0.91615 0.90407 0.91373 0.91459 0.84043 0.74615 0.89824 0.89454 0.93450 0.91876 0.95087 0.94259 0.92904 0.92681 0.95303 0.93697 0.98853 0.94125 0.88759 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.11 -0.95 2.86 -90.72 -0.26 -1.21 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -0.93 5.17 -26.69 -0.14 -1.06 16 5 C -0.14 -1.31 6.08 -26.61 -0.16 -1.48 16 6 C 0.07 0.74 6.00 -3.71 -0.02 0.72 16 7 N -0.58 -7.04 2.98 -173.53 -0.52 -7.56 16 8 C 0.51 7.33 7.74 -11.59 -0.09 7.25 16 9 O -0.52 -8.42 15.92 5.49 0.09 -8.33 16 10 C 0.51 7.43 7.74 -11.59 -0.09 7.34 16 11 O -0.52 -7.99 13.17 5.50 0.07 -7.92 16 12 N -0.68 -9.53 5.49 -60.74 -0.33 -9.86 16 13 C 0.12 1.59 6.06 -4.05 -0.02 1.57 16 14 C 0.05 0.60 6.07 37.15 0.23 0.83 16 15 O -0.36 -6.49 9.59 -35.23 -0.34 -6.83 16 16 C 0.04 0.76 6.28 37.16 0.23 0.99 16 17 C 0.15 3.05 6.07 -4.04 -0.02 3.03 16 18 N -0.60 -15.30 2.91 -181.11 -0.53 -15.82 16 19 C 0.16 4.10 8.97 59.85 0.54 4.64 16 20 C -0.23 -6.45 9.22 -15.06 -0.14 -6.59 16 21 H 0.07 2.12 7.67 -52.49 -0.40 1.71 16 22 C -0.01 -0.24 5.10 -17.43 -0.09 -0.32 16 23 N -0.92 -27.54 10.55 55.49 0.59 -26.96 16 24 Si 0.90 22.98 29.58 -169.99 -5.03 17.95 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 C 0.11 1.12 5.70 -3.93 -0.02 1.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.14 1.84 4.29 -54.91 -0.24 1.60 16 38 H 0.42 5.76 7.96 -40.82 -0.33 5.43 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 46 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 47 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 48 H 0.04 1.22 7.13 -51.93 -0.37 0.85 16 49 H -0.01 -0.15 8.03 -51.93 -0.42 -0.57 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 413.96 15.07 6.24 6.24 Total: -1.00 -33.31 413.96 -8.72 -42.03 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -9.24 Total: 0.89 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 0.28 Total: 16.16 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.79 Total: -60.20 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.18 Total: -23.08 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.95 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.31 -8.72 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700707097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.786 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds